data_3PCR # _model_server_result.job_id 6zOjVUacn3SthfoJi8mJNw _model_server_result.datetime_utc '2024-11-25 13:27:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3pcr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1231}' # _entry.id 3PCR # _exptl.entry_id 3PCR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3PCR _cell.length_a 104.566 _cell.length_b 104.566 _cell.length_c 98.238 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3PCR _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C GLU 6 A GLU 47 1_555 A N MSE 7 A MSE 48 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale2 A C MSE 7 A MSE 48 1_555 A N SER 8 A SER 49 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale3 A C HIS 107 A HIS 148 1_555 A N MSE 108 A MSE 149 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale4 A C MSE 108 A MSE 149 1_555 A N PRO 109 A PRO 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? covale ? covale5 A C GLU 119 A GLU 160 1_555 A N MSE 120 A MSE 161 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale6 A C MSE 120 A MSE 161 1_555 A N ASP 121 A ASP 162 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale7 A C SER 127 A SER 168 1_555 A N MSE 128 A MSE 169 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale8 A C MSE 128 A MSE 169 1_555 A N ARG 129 A ARG 170 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale9 A C PHE 162 A PHE 203 1_555 A N MSE 163 A MSE 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale10 A C MSE 163 A MSE 204 1_555 A N ASP 164 A ASP 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale11 A C ILE 307 A ILE 348 1_555 A N MSE 308 A MSE 349 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale12 A C MSE 308 A MSE 349 1_555 A N ALA 309 A ALA 350 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? covale ? covale13 A C GLU 316 A GLU 357 1_555 A N MSE 317 A MSE 358 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.318 ? covale ? covale14 A C MSE 317 A MSE 358 1_555 A N GLY 318 A GLY 359 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? covale ? covale15 A C GLY 318 A GLY 359 1_555 A N MSE 319 A MSE 360 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? covale ? covale16 A C MSE 319 A MSE 360 1_555 A N LEU 320 A LEU 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.313 ? covale ? covale17 A C GLU 338 A GLU 379 1_555 A N MSE 339 A MSE 380 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale18 A C MSE 339 A MSE 380 1_555 A N VAL 340 A VAL 381 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale19 B C MSE 1 B MSE 14 1_555 B N ARG 2 B ARG 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale20 B C LEU 4 B LEU 17 1_555 B N MSE 5 B MSE 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale21 B C MSE 5 B MSE 18 1_555 B N LEU 6 B LEU 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale22 B C GLU 98 B GLU 111 1_555 B N MSE 99 B MSE 112 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale23 B C MSE 99 B MSE 112 1_555 B N ARG 100 B ARG 113 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale24 B C ALA 116 B ALA 129 1_555 B N MSE 117 B MSE 130 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale25 B C MSE 117 B MSE 130 1_555 B N LYS 118 B LYS 131 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? metalc ? metalc1 B OG1 THR 14 B THR 27 1_555 D MG MG . B MG 1231 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.094 ? metalc ? metalc2 B OG1 THR 31 B THR 44 1_555 D MG MG . B MG 1231 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.163 ? metalc ? metalc3 F O HOH . B HOH 197 1_555 D MG MG . B MG 1231 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.775 ? metalc ? metalc4 C O2B GTP . B GTP 1230 1_555 D MG MG . B MG 1231 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.791 ? metalc ? metalc5 C O2G GTP . B GTP 1230 1_555 D MG MG . B MG 1231 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.959 ? metalc ? metalc6 C O3G GTP . B GTP 1230 1_555 D MG MG . B MG 1231 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.742 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3PCR _atom_sites.fract_transf_matrix[1][1] 0.009563 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009563 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010179 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 GTP B 1 1230 1230 GTP GTP . D 4 MG B 1 1231 1231 MG MG . E 5 HOH A 1 399 1 HOH HOH . E 5 HOH A 2 400 2 HOH HOH . E 5 HOH A 3 401 5 HOH HOH . E 5 HOH A 4 402 6 HOH HOH . E 5 HOH A 5 403 7 HOH HOH . E 5 HOH A 6 404 9 HOH HOH . E 5 HOH A 7 405 11 HOH HOH . E 5 HOH A 8 406 12 HOH HOH . E 5 HOH A 9 407 13 HOH HOH . E 5 HOH A 10 408 14 HOH HOH . E 5 HOH A 11 409 15 HOH HOH . E 5 HOH A 12 410 17 HOH HOH . E 5 HOH A 13 411 18 HOH HOH . E 5 HOH A 14 412 20 HOH HOH . E 5 HOH A 15 413 21 HOH HOH . E 5 HOH A 16 414 22 HOH HOH . E 5 HOH A 17 415 23 HOH HOH . E 5 HOH A 18 416 24 HOH HOH . E 5 HOH A 19 417 25 HOH HOH . E 5 HOH A 20 418 26 HOH HOH . E 5 HOH A 21 419 27 HOH HOH . E 5 HOH A 22 420 28 HOH HOH . E 5 HOH A 23 421 29 HOH HOH . E 5 HOH A 24 422 30 HOH HOH . E 5 HOH A 25 423 31 HOH HOH . E 5 HOH A 26 424 32 HOH HOH . E 5 HOH A 27 425 33 HOH HOH . E 5 HOH A 28 426 34 HOH HOH . E 5 HOH A 29 427 35 HOH HOH . E 5 HOH A 30 428 36 HOH HOH . E 5 HOH A 31 429 37 HOH HOH . E 5 HOH A 32 430 39 HOH HOH . E 5 HOH A 33 431 40 HOH HOH . E 5 HOH A 34 432 41 HOH HOH . E 5 HOH A 35 433 42 HOH HOH . E 5 HOH A 36 434 43 HOH HOH . E 5 HOH A 37 435 44 HOH HOH . E 5 HOH A 38 436 45 HOH HOH . E 5 HOH A 39 437 46 HOH HOH . E 5 HOH A 40 438 47 HOH HOH . E 5 HOH A 41 439 48 HOH HOH . E 5 HOH A 42 440 49 HOH HOH . E 5 HOH A 43 441 50 HOH HOH . E 5 HOH A 44 442 51 HOH HOH . E 5 HOH A 45 443 52 HOH HOH . E 5 HOH A 46 444 53 HOH HOH . E 5 HOH A 47 445 54 HOH HOH . E 5 HOH A 48 446 55 HOH HOH . E 5 HOH A 49 447 57 HOH HOH . E 5 HOH A 50 448 58 HOH HOH . E 5 HOH A 51 449 59 HOH HOH . E 5 HOH A 52 450 60 HOH HOH . E 5 HOH A 53 451 61 HOH HOH . E 5 HOH A 54 452 62 HOH HOH . E 5 HOH A 55 453 63 HOH HOH . E 5 HOH A 56 454 64 HOH HOH . E 5 HOH A 57 455 65 HOH HOH . E 5 HOH A 58 456 66 HOH HOH . E 5 HOH A 59 457 69 HOH HOH . E 5 HOH A 60 458 70 HOH HOH . E 5 HOH A 61 459 71 HOH HOH . E 5 HOH A 62 460 72 HOH HOH . E 5 HOH A 63 461 73 HOH HOH . E 5 HOH A 64 462 74 HOH HOH . E 5 HOH A 65 463 78 HOH HOH . E 5 HOH A 66 464 79 HOH HOH . E 5 HOH A 67 465 80 HOH HOH . E 5 HOH A 68 466 81 HOH HOH . E 5 HOH A 69 467 82 HOH HOH . E 5 HOH A 70 468 84 HOH HOH . E 5 HOH A 71 469 85 HOH HOH . E 5 HOH A 72 470 86 HOH HOH . E 5 HOH A 73 471 87 HOH HOH . E 5 HOH A 74 472 88 HOH HOH . E 5 HOH A 75 473 89 HOH HOH . E 5 HOH A 76 474 91 HOH HOH . E 5 HOH A 77 475 94 HOH HOH . E 5 HOH A 78 476 96 HOH HOH . E 5 HOH A 79 477 97 HOH HOH . E 5 HOH A 80 478 98 HOH HOH . E 5 HOH A 81 479 100 HOH HOH . E 5 HOH A 82 480 102 HOH HOH . E 5 HOH A 83 481 103 HOH HOH . E 5 HOH A 84 482 104 HOH HOH . E 5 HOH A 85 483 105 HOH HOH . E 5 HOH A 86 484 107 HOH HOH . E 5 HOH A 87 485 110 HOH HOH . E 5 HOH A 88 486 111 HOH HOH . E 5 HOH A 89 487 112 HOH HOH . E 5 HOH A 90 488 115 HOH HOH . E 5 HOH A 91 489 116 HOH HOH . E 5 HOH A 92 490 117 HOH HOH . E 5 HOH A 93 491 118 HOH HOH . E 5 HOH A 94 492 119 HOH HOH . E 5 HOH A 95 493 120 HOH HOH . E 5 HOH A 96 494 121 HOH HOH . E 5 HOH A 97 495 122 HOH HOH . E 5 HOH A 98 496 123 HOH HOH . E 5 HOH A 99 497 124 HOH HOH . E 5 HOH A 100 498 125 HOH HOH . E 5 HOH A 101 499 128 HOH HOH . E 5 HOH A 102 500 129 HOH HOH . E 5 HOH A 103 501 130 HOH HOH . E 5 HOH A 104 502 131 HOH HOH . E 5 HOH A 105 503 134 HOH HOH . F 5 HOH B 1 176 3 HOH HOH . F 5 HOH B 2 177 4 HOH HOH . F 5 HOH B 3 178 8 HOH HOH . F 5 HOH B 4 179 10 HOH HOH . F 5 HOH B 5 180 16 HOH HOH . F 5 HOH B 6 181 19 HOH HOH . F 5 HOH B 7 182 38 HOH HOH . F 5 HOH B 8 183 56 HOH HOH . F 5 HOH B 9 184 67 HOH HOH . F 5 HOH B 10 185 68 HOH HOH . F 5 HOH B 11 186 75 HOH HOH . F 5 HOH B 12 187 76 HOH HOH . F 5 HOH B 13 188 77 HOH HOH . F 5 HOH B 14 189 83 HOH HOH . F 5 HOH B 15 190 90 HOH HOH . F 5 HOH B 16 191 92 HOH HOH . F 5 HOH B 17 192 93 HOH HOH . F 5 HOH B 18 193 95 HOH HOH . F 5 HOH B 19 194 99 HOH HOH . F 5 HOH B 20 195 101 HOH HOH . F 5 HOH B 21 196 106 HOH HOH . F 5 HOH B 22 197 108 HOH HOH . F 5 HOH B 23 198 109 HOH HOH . F 5 HOH B 24 199 113 HOH HOH . F 5 HOH B 25 200 114 HOH HOH . F 5 HOH B 26 201 126 HOH HOH . F 5 HOH B 27 202 127 HOH HOH . F 5 HOH B 28 203 132 HOH HOH . F 5 HOH B 29 204 133 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 4 _atom_site.Cartn_x -44.123 _atom_site.Cartn_y -14.658 _atom_site.Cartn_z -29.957 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 45.23 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 1231 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 79 _model_server_stats.parse_time_ms 100 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 267 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 1 #