data_3PCV # _model_server_result.job_id Ag2rzvNYpipNq5G2E6evbg _model_server_result.datetime_utc '2024-11-22 21:12:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3pcv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"P","auth_seq_id":216}' # _entry.id 3PCV # _exptl.entry_id 3PCV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3PCV _cell.length_a 168.0295 _cell.length_b 168.0295 _cell.length_c 168.0295 _cell.Z_PDB 48 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3PCV _symmetry.cell_setting ? _symmetry.Int_Tables_number 196 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'F 2 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 18_555 z,-x+1/2,-y+1/2 0 0 1 -1 0 0 0 -1 0 0 84.01475 84.01475 3 'crystal symmetry operation' 48_555 -y+1/2,-z+1/2,x 0 -1 0 0 0 -1 1 0 0 84.01475 84.01475 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 N N N ? 4 O N N ? 4 P N N ? 4 Q N N # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 3PCV _atom_sites.fract_transf_matrix[1][1] 0.005951 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005951 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005951 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GSH A 1 201 201 GSH GTT . C 3 LMT A 1 203 203 LMT LMT . D 3 LMT A 1 204 204 LMT LMT . E 3 LMT A 1 205 205 LMT LMT . F 3 LMT A 1 206 206 LMT LMT . G 3 LMT A 1 207 207 LMT LMT . H 3 LMT A 1 208 208 LMT LMT . I 3 LMT A 1 209 209 LMT LMT . J 3 LMT A 1 210 210 LMT LMT . K 3 LMT A 1 211 211 LMT LMT . L 3 LMT A 1 212 212 LMT LMT . M 3 LMT A 1 213 213 LMT LMT . N 4 EDO A 1 214 214 EDO EDO . O 4 EDO A 1 215 215 EDO EDO . P 4 EDO A 1 216 216 EDO EDO . Q 4 EDO A 1 217 217 EDO EDO . R 5 UNL A 1 218 218 UNL UNK . S 5 UNL A 1 219 219 UNL UNK . T 5 UNL A 1 221 221 UNL UNK . U 5 UNL A 1 223 223 UNL UNK . V 6 SO4 A 1 250 250 SO4 SO4 . W 6 SO4 A 1 251 251 SO4 SO4 . X 7 HOH A 1 301 301 HOH HOH . X 7 HOH A 2 302 302 HOH HOH . X 7 HOH A 3 303 303 HOH HOH . X 7 HOH A 4 304 304 HOH HOH . X 7 HOH A 5 305 305 HOH HOH . X 7 HOH A 6 306 306 HOH HOH . X 7 HOH A 7 307 307 HOH HOH . X 7 HOH A 8 308 308 HOH HOH . X 7 HOH A 9 309 309 HOH HOH . X 7 HOH A 10 310 310 HOH HOH . X 7 HOH A 11 311 311 HOH HOH . X 7 HOH A 12 312 312 HOH HOH . X 7 HOH A 13 313 313 HOH HOH . X 7 HOH A 14 314 314 HOH HOH . X 7 HOH A 15 315 315 HOH HOH . X 7 HOH A 16 316 316 HOH HOH . X 7 HOH A 17 317 317 HOH HOH . X 7 HOH A 18 318 318 HOH HOH . X 7 HOH A 19 319 319 HOH HOH . X 7 HOH A 20 320 320 HOH HOH . X 7 HOH A 21 321 321 HOH HOH . X 7 HOH A 22 322 322 HOH HOH . X 7 HOH A 23 323 323 HOH HOH . X 7 HOH A 24 324 324 HOH HOH . X 7 HOH A 25 325 325 HOH HOH . X 7 HOH A 26 326 326 HOH HOH . X 7 HOH A 27 327 327 HOH HOH . X 7 HOH A 28 328 328 HOH HOH . X 7 HOH A 29 329 329 HOH HOH . X 7 HOH A 30 330 330 HOH HOH . X 7 HOH A 31 331 331 HOH HOH . X 7 HOH A 32 332 332 HOH HOH . X 7 HOH A 33 333 333 HOH HOH . X 7 HOH A 34 334 334 HOH HOH . X 7 HOH A 35 335 335 HOH HOH . X 7 HOH A 36 336 336 HOH HOH . X 7 HOH A 37 337 337 HOH HOH . X 7 HOH A 38 338 338 HOH HOH . X 7 HOH A 39 339 339 HOH HOH . X 7 HOH A 40 340 340 HOH HOH . X 7 HOH A 41 341 341 HOH HOH . X 7 HOH A 42 342 342 HOH HOH . X 7 HOH A 43 343 343 HOH HOH . X 7 HOH A 44 344 344 HOH HOH . X 7 HOH A 45 345 345 HOH HOH . X 7 HOH A 46 346 346 HOH HOH . X 7 HOH A 47 347 347 HOH HOH . X 7 HOH A 48 348 348 HOH HOH . X 7 HOH A 49 349 349 HOH HOH . X 7 HOH A 50 350 350 HOH HOH . X 7 HOH A 51 351 351 HOH HOH . X 7 HOH A 52 352 352 HOH HOH . X 7 HOH A 53 353 353 HOH HOH . X 7 HOH A 54 354 354 HOH HOH . X 7 HOH A 55 355 355 HOH HOH . X 7 HOH A 56 356 356 HOH HOH . X 7 HOH A 57 357 357 HOH HOH . X 7 HOH A 58 358 358 HOH HOH . X 7 HOH A 59 359 359 HOH HOH . X 7 HOH A 60 360 360 HOH HOH . X 7 HOH A 61 361 361 HOH HOH . X 7 HOH A 62 362 362 HOH HOH . X 7 HOH A 63 363 363 HOH HOH . X 7 HOH A 64 364 364 HOH HOH . X 7 HOH A 65 365 365 HOH HOH . X 7 HOH A 66 367 367 HOH HOH . X 7 HOH A 67 368 368 HOH HOH . X 7 HOH A 68 369 369 HOH HOH . X 7 HOH A 69 372 372 HOH HOH . X 7 HOH A 70 374 374 HOH HOH . X 7 HOH A 71 376 376 HOH HOH . X 7 HOH A 72 377 377 HOH HOH . X 7 HOH A 73 378 378 HOH HOH . X 7 HOH A 74 380 380 HOH HOH . X 7 HOH A 75 381 381 HOH HOH . X 7 HOH A 76 382 382 HOH HOH . X 7 HOH A 77 384 384 HOH HOH . X 7 HOH A 78 385 385 HOH HOH . X 7 HOH A 79 387 387 HOH HOH . X 7 HOH A 80 388 388 HOH HOH . X 7 HOH A 81 389 389 HOH HOH . X 7 HOH A 82 390 390 HOH HOH . X 7 HOH A 83 391 391 HOH HOH . X 7 HOH A 84 392 392 HOH HOH . X 7 HOH A 85 394 394 HOH HOH . X 7 HOH A 86 397 397 HOH HOH . X 7 HOH A 87 398 398 HOH HOH . X 7 HOH A 88 399 399 HOH HOH . X 7 HOH A 89 400 400 HOH HOH . X 7 HOH A 90 402 402 HOH HOH . X 7 HOH A 91 403 403 HOH HOH . X 7 HOH A 92 405 405 HOH HOH . X 7 HOH A 93 406 406 HOH HOH . X 7 HOH A 94 407 407 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . P 4 43.833 51.66 18.588 1 48.3 ? C1 EDO 216 A 1 HETATM 2 O O1 EDO . . . P 4 44.16 52.348 19.805 1 66.89 ? O1 EDO 216 A 1 HETATM 3 C C2 EDO . . . P 4 44.405 50.247 18.656 1 53.42 ? C2 EDO 216 A 1 HETATM 4 O O2 EDO . . . P 4 43.343 49.288 18.633 1 50.63 ? O2 EDO 216 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 287 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 4 #