data_3PCZ
#
_model_server_result.job_id            N3Bfutv32KEmQqwIdNOlfA 
_model_server_result.datetime_utc      '2024-11-05 21:12:10' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3pcz 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":1001}' 
#
_entry.id    3PCZ 
#
_exptl.entry_id    3PCZ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              120.152 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            BENZAMIDINE 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          109.85 
_cell.angle_gamma         90 
_cell.entry_id            3PCZ 
_cell.length_a            45.46 
_cell.length_b            72.79 
_cell.length_c            52.58 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3PCZ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 B N N 
? 2 C N N 
? 2 D N N 
#
_struct_conn.conn_type_id                   disulf 
_struct_conn.details                        ? 
_struct_conn.id                             disulf1 
_struct_conn.ptnr1_label_asym_id            A 
_struct_conn.ptnr1_label_atom_id            SG 
_struct_conn.ptnr1_label_comp_id            CYS 
_struct_conn.ptnr1_label_seq_id             255 
_struct_conn.ptnr1_auth_asym_id             A 
_struct_conn.ptnr1_auth_comp_id             CYS 
_struct_conn.ptnr1_auth_seq_id              255 
_struct_conn.ptnr1_symmetry                 1_555 
_struct_conn.ptnr2_label_asym_id            A 
_struct_conn.ptnr2_label_atom_id            SG 
_struct_conn.ptnr2_label_comp_id            CYS 
_struct_conn.ptnr2_label_seq_id             290 
_struct_conn.ptnr2_auth_asym_id             A 
_struct_conn.ptnr2_auth_comp_id             CYS 
_struct_conn.ptnr2_auth_seq_id              290 
_struct_conn.ptnr2_symmetry                 1_555 
_struct_conn.pdbx_ptnr1_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr1_label_alt_id        ? 
_struct_conn.pdbx_ptnr1_standard_comp_id    ? 
_struct_conn.pdbx_ptnr2_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr2_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr3_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_label_asym_id       ? 
_struct_conn.pdbx_ptnr3_label_atom_id       ? 
_struct_conn.pdbx_ptnr3_label_comp_id       ? 
_struct_conn.pdbx_ptnr3_label_seq_id        ? 
_struct_conn.pdbx_PDB_id                    ? 
_struct_conn.pdbx_dist_value                2.044 
_struct_conn.pdbx_value_order               ? 
#
_chem_comp.formula           'C7 H8 N2' 
_chem_comp.formula_weight    120.152 
_chem_comp.id                BEN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              BENZAMIDINE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     3PCZ 
_atom_sites.fract_transf_matrix[1][1]    0.021997 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.007941 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013738 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.02022 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 BEN A 1 1001 1001 BEN BAM . 
C 2 BEN A 1 2001 2001 BEN BAM . 
D 2 BEN A 1 3001 3001 BEN BAM . 
E 3 DMS A 1 4001 4001 DMS DMS . 
F 4 HOH A 1 6001 6001 HOH HOH . 
F 4 HOH A 2 6002 6002 HOH HOH . 
F 4 HOH A 3 6003 6003 HOH HOH . 
F 4 HOH A 4 6004 6004 HOH HOH . 
F 4 HOH A 5 6005 6005 HOH HOH . 
F 4 HOH A 6 6006 6006 HOH HOH . 
F 4 HOH A 7 6007 6007 HOH HOH . 
F 4 HOH A 8 6008 6008 HOH HOH . 
F 4 HOH A 9 6009 6009 HOH HOH . 
F 4 HOH A 10 6010 6010 HOH HOH . 
F 4 HOH A 11 6011 6011 HOH HOH . 
F 4 HOH A 12 6012 6012 HOH HOH . 
F 4 HOH A 13 6013 6013 HOH HOH . 
F 4 HOH A 14 6014 6014 HOH HOH . 
F 4 HOH A 15 6015 6015 HOH HOH . 
F 4 HOH A 16 6016 6016 HOH HOH . 
F 4 HOH A 17 6017 6017 HOH HOH . 
F 4 HOH A 18 6018 6018 HOH HOH . 
F 4 HOH A 19 6019 6019 HOH HOH . 
F 4 HOH A 20 6020 6020 HOH HOH . 
F 4 HOH A 21 6021 6021 HOH HOH . 
F 4 HOH A 22 6022 6022 HOH HOH . 
F 4 HOH A 23 6023 6023 HOH HOH . 
F 4 HOH A 24 6024 6024 HOH HOH . 
F 4 HOH A 25 6025 6025 HOH HOH . 
F 4 HOH A 26 6026 6026 HOH HOH . 
F 4 HOH A 27 6027 6027 HOH HOH . 
F 4 HOH A 28 6028 6028 HOH HOH . 
F 4 HOH A 29 6029 6029 HOH HOH . 
F 4 HOH A 30 6030 6030 HOH HOH . 
F 4 HOH A 31 6031 6031 HOH HOH . 
F 4 HOH A 32 6032 6032 HOH HOH . 
F 4 HOH A 33 6033 6033 HOH HOH . 
F 4 HOH A 34 6034 6034 HOH HOH . 
F 4 HOH A 35 6035 6035 HOH HOH . 
F 4 HOH A 36 6036 6036 HOH HOH . 
F 4 HOH A 37 6037 6037 HOH HOH . 
F 4 HOH A 38 6038 6038 HOH HOH . 
F 4 HOH A 39 6039 6039 HOH HOH . 
F 4 HOH A 40 6040 6040 HOH HOH . 
F 4 HOH A 41 6041 6041 HOH HOH . 
F 4 HOH A 42 6042 6042 HOH HOH . 
F 4 HOH A 43 6043 6043 HOH HOH . 
F 4 HOH A 44 6044 6044 HOH HOH . 
F 4 HOH A 45 6045 6045 HOH HOH . 
F 4 HOH A 46 6046 6046 HOH HOH . 
F 4 HOH A 47 6047 6047 HOH HOH . 
F 4 HOH A 48 6048 6048 HOH HOH . 
F 4 HOH A 49 6049 6049 HOH HOH . 
F 4 HOH A 50 6050 6050 HOH HOH . 
F 4 HOH A 51 6051 6051 HOH HOH . 
F 4 HOH A 52 6052 6052 HOH HOH . 
F 4 HOH A 53 6053 6053 HOH HOH . 
F 4 HOH A 54 6054 6054 HOH HOH . 
F 4 HOH A 55 6055 6055 HOH HOH . 
F 4 HOH A 56 6056 6056 HOH HOH . 
F 4 HOH A 57 6057 6057 HOH HOH . 
F 4 HOH A 58 6058 6058 HOH HOH . 
F 4 HOH A 59 6059 6059 HOH HOH . 
F 4 HOH A 60 6060 6060 HOH HOH . 
F 4 HOH A 61 6061 6061 HOH HOH . 
F 4 HOH A 62 6062 6062 HOH HOH . 
F 4 HOH A 63 6063 6063 HOH HOH . 
F 4 HOH A 64 6064 6064 HOH HOH . 
F 4 HOH A 65 6065 6065 HOH HOH . 
F 4 HOH A 66 6066 6066 HOH HOH . 
F 4 HOH A 67 6067 6067 HOH HOH . 
F 4 HOH A 68 6068 6068 HOH HOH . 
F 4 HOH A 69 6069 6069 HOH HOH . 
F 4 HOH A 70 6070 6070 HOH HOH . 
F 4 HOH A 71 6071 6071 HOH HOH . 
F 4 HOH A 72 6072 6072 HOH HOH . 
F 4 HOH A 73 6073 6073 HOH HOH . 
F 4 HOH A 74 6074 6074 HOH HOH . 
F 4 HOH A 75 6075 6075 HOH HOH . 
F 4 HOH A 76 6076 6076 HOH HOH . 
F 4 HOH A 77 6077 6077 HOH HOH . 
F 4 HOH A 78 6078 6078 HOH HOH . 
F 4 HOH A 79 6079 6079 HOH HOH . 
F 4 HOH A 80 6080 6080 HOH HOH . 
F 4 HOH A 81 6081 6081 HOH HOH . 
F 4 HOH A 82 6082 6082 HOH HOH . 
F 4 HOH A 83 6083 6083 HOH HOH . 
F 4 HOH A 84 6084 6084 HOH HOH . 
F 4 HOH A 85 6085 6085 HOH HOH . 
F 4 HOH A 86 6086 6086 HOH HOH . 
F 4 HOH A 87 6087 6087 HOH HOH . 
F 4 HOH A 88 6088 6088 HOH HOH . 
F 4 HOH A 89 6089 6089 HOH HOH . 
F 4 HOH A 90 6090 6090 HOH HOH . 
F 4 HOH A 91 6091 6091 HOH HOH . 
F 4 HOH A 92 6092 6092 HOH HOH . 
F 4 HOH A 93 6093 6093 HOH HOH . 
F 4 HOH A 94 6094 6094 HOH HOH . 
F 4 HOH A 95 6095 6095 HOH HOH . 
F 4 HOH A 96 6096 6096 HOH HOH . 
F 4 HOH A 97 6097 6097 HOH HOH . 
F 4 HOH A 98 6098 6098 HOH HOH . 
F 4 HOH A 99 6099 6099 HOH HOH . 
F 4 HOH A 100 6100 6100 HOH HOH . 
F 4 HOH A 101 6101 6101 HOH HOH . 
F 4 HOH A 102 6102 6102 HOH HOH . 
F 4 HOH A 103 6103 6103 HOH HOH . 
F 4 HOH A 104 6104 6104 HOH HOH . 
F 4 HOH A 105 6105 6105 HOH HOH . 
F 4 HOH A 106 6106 6106 HOH HOH . 
F 4 HOH A 107 6107 6107 HOH HOH . 
F 4 HOH A 108 6108 6108 HOH HOH . 
F 4 HOH A 109 6109 6109 HOH HOH . 
F 4 HOH A 110 6110 6110 HOH HOH . 
F 4 HOH A 111 6111 6111 HOH HOH . 
F 4 HOH A 112 6112 6112 HOH HOH . 
F 4 HOH A 113 6113 6113 HOH HOH . 
F 4 HOH A 114 6114 6114 HOH HOH . 
F 4 HOH A 115 6115 6115 HOH HOH . 
F 4 HOH A 116 6116 6116 HOH HOH . 
F 4 HOH A 117 6117 6117 HOH HOH . 
F 4 HOH A 118 6118 6118 HOH HOH . 
F 4 HOH A 119 6119 6119 HOH HOH . 
F 4 HOH A 120 6120 6120 HOH HOH . 
F 4 HOH A 121 6121 6121 HOH HOH . 
F 4 HOH A 122 6122 6122 HOH HOH . 
F 4 HOH A 123 6123 6123 HOH HOH . 
F 4 HOH A 124 6124 6124 HOH HOH . 
F 4 HOH A 125 6125 6125 HOH HOH . 
F 4 HOH A 126 6126 6126 HOH HOH . 
F 4 HOH A 127 6127 6127 HOH HOH . 
F 4 HOH A 128 6128 6128 HOH HOH . 
F 4 HOH A 129 6129 6129 HOH HOH . 
F 4 HOH A 130 6130 6130 HOH HOH . 
F 4 HOH A 131 6131 6131 HOH HOH . 
F 4 HOH A 132 6132 6132 HOH HOH . 
F 4 HOH A 133 6133 6133 HOH HOH . 
F 4 HOH A 134 6134 6134 HOH HOH . 
F 4 HOH A 135 6135 6135 HOH HOH . 
F 4 HOH A 136 6136 6136 HOH HOH . 
F 4 HOH A 137 6137 6137 HOH HOH . 
F 4 HOH A 138 6138 6138 HOH HOH . 
F 4 HOH A 139 6139 6139 HOH HOH . 
F 4 HOH A 140 6140 6140 HOH HOH . 
F 4 HOH A 141 6141 6141 HOH HOH . 
F 4 HOH A 142 6142 6142 HOH HOH . 
F 4 HOH A 143 6143 6143 HOH HOH . 
F 4 HOH A 144 6144 6144 HOH HOH . 
F 4 HOH A 145 6145 6145 HOH HOH . 
F 4 HOH A 146 6146 6146 HOH HOH . 
F 4 HOH A 147 6147 6147 HOH HOH . 
F 4 HOH A 148 6148 6148 HOH HOH . 
F 4 HOH A 149 6149 6149 HOH HOH . 
F 4 HOH A 150 6150 6150 HOH HOH . 
F 4 HOH A 151 6151 6151 HOH HOH . 
F 4 HOH A 152 6152 6152 HOH HOH . 
F 4 HOH A 153 6153 6153 HOH HOH . 
F 4 HOH A 154 6154 6154 HOH HOH . 
F 4 HOH A 155 6155 6155 HOH HOH . 
F 4 HOH A 156 6156 6156 HOH HOH . 
F 4 HOH A 157 6157 6157 HOH HOH . 
F 4 HOH A 158 6158 6158 HOH HOH . 
F 4 HOH A 159 6159 6159 HOH HOH . 
F 4 HOH A 160 6160 6160 HOH HOH . 
F 4 HOH A 161 6161 6161 HOH HOH . 
F 4 HOH A 162 6162 6162 HOH HOH . 
F 4 HOH A 163 6163 6163 HOH HOH . 
F 4 HOH A 164 6164 6164 HOH HOH . 
F 4 HOH A 165 6165 6165 HOH HOH . 
F 4 HOH A 166 6166 6166 HOH HOH . 
F 4 HOH A 167 6167 6167 HOH HOH . 
F 4 HOH A 168 6168 6168 HOH HOH . 
F 4 HOH A 169 6169 6169 HOH HOH . 
F 4 HOH A 170 6170 6170 HOH HOH . 
F 4 HOH A 171 6171 6171 HOH HOH . 
F 4 HOH A 172 6172 6172 HOH HOH . 
F 4 HOH A 173 6173 6173 HOH HOH . 
F 4 HOH A 174 6174 6174 HOH HOH . 
F 4 HOH A 175 6175 6175 HOH HOH . 
F 4 HOH A 176 6176 6176 HOH HOH . 
F 4 HOH A 177 6177 6177 HOH HOH . 
F 4 HOH A 178 6178 6178 HOH HOH . 
F 4 HOH A 179 6179 6179 HOH HOH . 
F 4 HOH A 180 6180 6180 HOH HOH . 
F 4 HOH A 181 6181 6181 HOH HOH . 
F 4 HOH A 182 6182 6182 HOH HOH . 
F 4 HOH A 183 6183 6183 HOH HOH . 
F 4 HOH A 184 6184 6184 HOH HOH . 
F 4 HOH A 185 6185 6185 HOH HOH . 
F 4 HOH A 186 6186 6186 HOH HOH . 
F 4 HOH A 187 6187 6187 HOH HOH . 
F 4 HOH A 188 6188 6188 HOH HOH . 
F 4 HOH A 189 6189 6189 HOH HOH . 
F 4 HOH A 190 6190 6190 HOH HOH . 
F 4 HOH A 191 6191 6191 HOH HOH . 
F 4 HOH A 192 6192 6192 HOH HOH . 
F 4 HOH A 193 6193 6193 HOH HOH . 
F 4 HOH A 194 6194 6194 HOH HOH . 
F 4 HOH A 195 6195 6195 HOH HOH . 
F 4 HOH A 196 6196 6196 HOH HOH . 
F 4 HOH A 197 6197 6197 HOH HOH . 
F 4 HOH A 198 6198 6198 HOH HOH . 
F 4 HOH A 199 6199 6199 HOH HOH . 
F 4 HOH A 200 6200 6200 HOH HOH . 
F 4 HOH A 201 6201 6201 HOH HOH . 
F 4 HOH A 202 6202 6202 HOH HOH . 
F 4 HOH A 203 6203 6203 HOH HOH . 
F 4 HOH A 204 6204 6204 HOH HOH . 
F 4 HOH A 205 6205 6205 HOH HOH . 
F 4 HOH A 206 6206 6206 HOH HOH . 
F 4 HOH A 207 6207 6207 HOH HOH . 
F 4 HOH A 208 6208 6208 HOH HOH . 
F 4 HOH A 209 6209 6209 HOH HOH . 
F 4 HOH A 210 6210 6210 HOH HOH . 
F 4 HOH A 211 6211 6211 HOH HOH . 
F 4 HOH A 212 6212 6212 HOH HOH . 
F 4 HOH A 213 6213 6213 HOH HOH . 
F 4 HOH A 214 6214 6214 HOH HOH . 
F 4 HOH A 215 6215 6215 HOH HOH . 
F 4 HOH A 216 6216 6216 HOH HOH . 
F 4 HOH A 217 6217 6217 HOH HOH . 
F 4 HOH A 218 6218 6218 HOH HOH . 
F 4 HOH A 219 6219 6219 HOH HOH . 
F 4 HOH A 220 6220 6220 HOH HOH . 
F 4 HOH A 221 6221 6221 HOH HOH . 
F 4 HOH A 222 6222 6222 HOH HOH . 
F 4 HOH A 223 6223 6223 HOH HOH . 
F 4 HOH A 224 6224 6224 HOH HOH . 
F 4 HOH A 225 6225 6225 HOH HOH . 
F 4 HOH A 226 6226 6226 HOH HOH . 
F 4 HOH A 227 6227 6227 HOH HOH . 
F 4 HOH A 228 6228 6228 HOH HOH . 
F 4 HOH A 229 6229 6229 HOH HOH . 
F 4 HOH A 230 6230 6230 HOH HOH . 
F 4 HOH A 231 6231 6231 HOH HOH . 
F 4 HOH A 232 6232 6232 HOH HOH . 
F 4 HOH A 233 6233 6233 HOH HOH . 
F 4 HOH A 234 6234 6234 HOH HOH . 
F 4 HOH A 235 6235 6235 HOH HOH . 
F 4 HOH A 236 6236 6236 HOH HOH . 
F 4 HOH A 237 6237 6237 HOH HOH . 
F 4 HOH A 238 6238 6238 HOH HOH . 
F 4 HOH A 239 6239 6239 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 BEN . . . B 2 1.81 6.789 9.533 1 20.57 ? C1 BEN 1001 A 1 
HETATM 2 C C2 BEN . . . B 2 2.624 7.543 8.685 1 20.81 ? C2 BEN 1001 A 1 
HETATM 3 C C3 BEN . . . B 2 2.353 8.87 8.388 1 23.09 ? C3 BEN 1001 A 1 
HETATM 4 C C4 BEN . . . B 2 1.21 9.463 8.932 1 24.42 ? C4 BEN 1001 A 1 
HETATM 5 C C5 BEN . . . B 2 0.368 8.712 9.763 1 25.18 ? C5 BEN 1001 A 1 
HETATM 6 C C6 BEN . . . B 2 0.656 7.377 10.058 1 23.41 ? C6 BEN 1001 A 1 
HETATM 7 C C BEN . . . B 2 2.109 5.327 9.812 1 16.73 ? C BEN 1001 A 1 
HETATM 8 N N1 BEN . . . B 2 2.574 4.584 8.781 1 16.88 ? N1 BEN 1001 A 1 
HETATM 9 N N2 BEN . . . B 2 1.994 4.893 11.003 1 18.25 ? N2 BEN 1001 A 1 
#
_model_server_stats.io_time_ms              52 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           308 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           9 
#