data_3PDC # _model_server_result.job_id g_LDI3NXEzaIXmlRQMdKjg _model_server_result.datetime_utc '2024-10-19 16:45:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3pdc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":2}' # _entry.id 3PDC # _exptl.entry_id 3PDC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 278.734 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-(5-chloro-1,3-benzoxazol-2-yl)-2-cyclopentylacetamide _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90.223 _cell.angle_gamma 90 _cell.entry_id 3PDC _cell.length_a 46.523 _cell.length_b 79.902 _cell.length_c 89.318 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3PDC _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E 1 1 B,D,F 1 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_646 -x+1,y-1/2,-z+1 -1 0 0 0 1 0 0 0 -1 46.175368 -39.951 89.317323 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C14 H15 Cl N2 O2' _chem_comp.formula_weight 278.734 _chem_comp.id ZYI _chem_comp.mon_nstd_flag . _chem_comp.name N-(5-chloro-1,3-benzoxazol-2-yl)-2-cyclopentylacetamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 ZYI doub 376 n y N1 C10 ZYI sing 377 n y N11 C2 ZYI sing 378 n n C2 O3 ZYI sing 379 n y O3 C4 ZYI sing 380 n y C10 C4 ZYI doub 381 n y C4 C5 ZYI sing 382 n y C6 C5 ZYI doub 383 n y C5 H5 ZYI sing 384 n n C7 C6 ZYI sing 385 n y C6 H6 ZYI sing 386 n n C9 C7 ZYI doub 387 n y CL8 C7 ZYI sing 388 n n C9 C10 ZYI sing 389 n y C9 H9 ZYI sing 390 n n C12 N11 ZYI sing 391 n n N11 HN11 ZYI sing 392 n n O19 C12 ZYI doub 393 n n C13 C12 ZYI sing 394 n n C14 C13 ZYI sing 395 n n C13 H13 ZYI sing 396 n n C13 H13A ZYI sing 397 n n C15 C14 ZYI sing 398 n n C18 C14 ZYI sing 399 n n C14 H14 ZYI sing 400 n n C16 C15 ZYI sing 401 n n C15 H15 ZYI sing 402 n n C15 H15A ZYI sing 403 n n C16 C17 ZYI sing 404 n n C16 H16 ZYI sing 405 n n C16 H16A ZYI sing 406 n n C17 C18 ZYI sing 407 n n C17 H17 ZYI sing 408 n n C17 H17A ZYI sing 409 n n C18 H18 ZYI sing 410 n n C18 H18A ZYI sing 411 n n # _atom_sites.entry_id 3PDC _atom_sites.fract_transf_matrix[1][1] 0.021495 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000084 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012515 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011196 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ZYI A 1 1 1 ZYI ZYI . D 2 ZYI B 1 2 2 ZYI ZYI . E 3 HOH A 1 1004 1004 HOH HOH . E 3 HOH A 2 1005 1005 HOH HOH . E 3 HOH A 3 1007 1007 HOH HOH . E 3 HOH A 4 1008 1008 HOH HOH . E 3 HOH A 5 1009 1009 HOH HOH . E 3 HOH A 6 1011 1011 HOH HOH . E 3 HOH A 7 1012 1012 HOH HOH . E 3 HOH A 8 1013 1013 HOH HOH . E 3 HOH A 9 1015 1015 HOH HOH . E 3 HOH A 10 1017 1017 HOH HOH . E 3 HOH A 11 1019 1019 HOH HOH . E 3 HOH A 12 1022 1022 HOH HOH . E 3 HOH A 13 1023 1023 HOH HOH . E 3 HOH A 14 1029 1029 HOH HOH . E 3 HOH A 15 1032 1032 HOH HOH . E 3 HOH A 16 1033 1033 HOH HOH . E 3 HOH A 17 1036 1036 HOH HOH . E 3 HOH A 18 1038 1038 HOH HOH . E 3 HOH A 19 1039 1039 HOH HOH . E 3 HOH A 20 1040 1040 HOH HOH . E 3 HOH A 21 1041 1041 HOH HOH . E 3 HOH A 22 1047 1047 HOH HOH . E 3 HOH A 23 1052 1052 HOH HOH . E 3 HOH A 24 1054 1054 HOH HOH . E 3 HOH A 25 1055 1055 HOH HOH . E 3 HOH A 26 1058 1058 HOH HOH . E 3 HOH A 27 1059 1059 HOH HOH . E 3 HOH A 28 1060 1060 HOH HOH . E 3 HOH A 29 1061 1061 HOH HOH . E 3 HOH A 30 1064 1064 HOH HOH . E 3 HOH A 31 1067 1067 HOH HOH . E 3 HOH A 32 1070 1070 HOH HOH . E 3 HOH A 33 1073 1073 HOH HOH . E 3 HOH A 34 1076 1076 HOH HOH . E 3 HOH A 35 1077 1077 HOH HOH . E 3 HOH A 36 1081 1081 HOH HOH . E 3 HOH A 37 1084 1084 HOH HOH . E 3 HOH A 38 1086 1086 HOH HOH . E 3 HOH A 39 1088 1088 HOH HOH . E 3 HOH A 40 1089 1089 HOH HOH . E 3 HOH A 41 1090 1090 HOH HOH . E 3 HOH A 42 1091 1091 HOH HOH . E 3 HOH A 43 1092 1092 HOH HOH . E 3 HOH A 44 1096 1096 HOH HOH . E 3 HOH A 45 1097 1097 HOH HOH . E 3 HOH A 46 1100 1100 HOH HOH . E 3 HOH A 47 1101 1101 HOH HOH . E 3 HOH A 48 1102 1102 HOH HOH . E 3 HOH A 49 1104 1104 HOH HOH . E 3 HOH A 50 1108 1108 HOH HOH . E 3 HOH A 51 1110 1110 HOH HOH . E 3 HOH A 52 1111 1111 HOH HOH . E 3 HOH A 53 1113 1113 HOH HOH . E 3 HOH A 54 1114 1114 HOH HOH . E 3 HOH A 55 1118 1118 HOH HOH . E 3 HOH A 56 1119 1119 HOH HOH . E 3 HOH A 57 1120 1120 HOH HOH . E 3 HOH A 58 1123 1123 HOH HOH . E 3 HOH A 59 1126 1126 HOH HOH . E 3 HOH A 60 1128 1128 HOH HOH . E 3 HOH A 61 1129 1129 HOH HOH . E 3 HOH A 62 1130 1130 HOH HOH . E 3 HOH A 63 1131 1131 HOH HOH . E 3 HOH A 64 1132 1132 HOH HOH . E 3 HOH A 65 1133 1133 HOH HOH . E 3 HOH A 66 1135 1135 HOH HOH . E 3 HOH A 67 1137 1137 HOH HOH . E 3 HOH A 68 1138 1138 HOH HOH . E 3 HOH A 69 1140 1140 HOH HOH . E 3 HOH A 70 1141 1141 HOH HOH . E 3 HOH A 71 1142 1142 HOH HOH . E 3 HOH A 72 1144 1144 HOH HOH . E 3 HOH A 73 1145 1145 HOH HOH . E 3 HOH A 74 1148 1148 HOH HOH . E 3 HOH A 75 1152 1152 HOH HOH . E 3 HOH A 76 1153 1153 HOH HOH . E 3 HOH A 77 1155 1155 HOH HOH . E 3 HOH A 78 1160 1160 HOH HOH . E 3 HOH A 79 1161 1161 HOH HOH . E 3 HOH A 80 1162 1162 HOH HOH . E 3 HOH A 81 1163 1163 HOH HOH . E 3 HOH A 82 1168 1168 HOH HOH . E 3 HOH A 83 1170 1170 HOH HOH . E 3 HOH A 84 1171 1171 HOH HOH . E 3 HOH A 85 1176 1176 HOH HOH . E 3 HOH A 86 1177 1177 HOH HOH . E 3 HOH A 87 1178 1178 HOH HOH . E 3 HOH A 88 1180 1180 HOH HOH . E 3 HOH A 89 1182 1182 HOH HOH . E 3 HOH A 90 1184 1184 HOH HOH . E 3 HOH A 91 1187 1187 HOH HOH . E 3 HOH A 92 1188 1188 HOH HOH . E 3 HOH A 93 1203 1203 HOH HOH . F 3 HOH B 1 1001 1001 HOH HOH . F 3 HOH B 2 1002 1002 HOH HOH . F 3 HOH B 3 1003 1003 HOH HOH . F 3 HOH B 4 1006 1006 HOH HOH . F 3 HOH B 5 1010 1010 HOH HOH . F 3 HOH B 6 1014 1014 HOH HOH . F 3 HOH B 7 1016 1016 HOH HOH . F 3 HOH B 8 1018 1018 HOH HOH . F 3 HOH B 9 1020 1020 HOH HOH . F 3 HOH B 10 1021 1021 HOH HOH . F 3 HOH B 11 1024 1024 HOH HOH . F 3 HOH B 12 1025 1025 HOH HOH . F 3 HOH B 13 1026 1026 HOH HOH . F 3 HOH B 14 1027 1027 HOH HOH . F 3 HOH B 15 1028 1028 HOH HOH . F 3 HOH B 16 1030 1030 HOH HOH . F 3 HOH B 17 1031 1031 HOH HOH . F 3 HOH B 18 1034 1034 HOH HOH . F 3 HOH B 19 1035 1035 HOH HOH . F 3 HOH B 20 1037 1037 HOH HOH . F 3 HOH B 21 1042 1042 HOH HOH . F 3 HOH B 22 1043 1043 HOH HOH . F 3 HOH B 23 1044 1044 HOH HOH . F 3 HOH B 24 1045 1045 HOH HOH . F 3 HOH B 25 1046 1046 HOH HOH . F 3 HOH B 26 1048 1048 HOH HOH . F 3 HOH B 27 1049 1049 HOH HOH . F 3 HOH B 28 1050 1050 HOH HOH . F 3 HOH B 29 1051 1051 HOH HOH . F 3 HOH B 30 1053 1053 HOH HOH . F 3 HOH B 31 1056 1056 HOH HOH . F 3 HOH B 32 1057 1057 HOH HOH . F 3 HOH B 33 1062 1062 HOH HOH . F 3 HOH B 34 1063 1063 HOH HOH . F 3 HOH B 35 1065 1065 HOH HOH . F 3 HOH B 36 1066 1066 HOH HOH . F 3 HOH B 37 1068 1068 HOH HOH . F 3 HOH B 38 1069 1069 HOH HOH . F 3 HOH B 39 1071 1071 HOH HOH . F 3 HOH B 40 1072 1072 HOH HOH . F 3 HOH B 41 1074 1074 HOH HOH . F 3 HOH B 42 1075 1075 HOH HOH . F 3 HOH B 43 1078 1078 HOH HOH . F 3 HOH B 44 1079 1079 HOH HOH . F 3 HOH B 45 1080 1080 HOH HOH . F 3 HOH B 46 1082 1082 HOH HOH . F 3 HOH B 47 1083 1083 HOH HOH . F 3 HOH B 48 1085 1085 HOH HOH . F 3 HOH B 49 1087 1087 HOH HOH . F 3 HOH B 50 1093 1093 HOH HOH . F 3 HOH B 51 1094 1094 HOH HOH . F 3 HOH B 52 1095 1095 HOH HOH . F 3 HOH B 53 1098 1098 HOH HOH . F 3 HOH B 54 1099 1099 HOH HOH . F 3 HOH B 55 1103 1103 HOH HOH . F 3 HOH B 56 1105 1105 HOH HOH . F 3 HOH B 57 1106 1106 HOH HOH . F 3 HOH B 58 1107 1107 HOH HOH . F 3 HOH B 59 1109 1109 HOH HOH . F 3 HOH B 60 1112 1112 HOH HOH . F 3 HOH B 61 1115 1115 HOH HOH . F 3 HOH B 62 1116 1116 HOH HOH . F 3 HOH B 63 1117 1117 HOH HOH . F 3 HOH B 64 1121 1121 HOH HOH . F 3 HOH B 65 1122 1122 HOH HOH . F 3 HOH B 66 1124 1124 HOH HOH . F 3 HOH B 67 1125 1125 HOH HOH . F 3 HOH B 68 1127 1127 HOH HOH . F 3 HOH B 69 1134 1134 HOH HOH . F 3 HOH B 70 1136 1136 HOH HOH . F 3 HOH B 71 1139 1139 HOH HOH . F 3 HOH B 72 1143 1143 HOH HOH . F 3 HOH B 73 1146 1146 HOH HOH . F 3 HOH B 74 1147 1147 HOH HOH . F 3 HOH B 75 1149 1149 HOH HOH . F 3 HOH B 76 1150 1150 HOH HOH . F 3 HOH B 77 1151 1151 HOH HOH . F 3 HOH B 78 1154 1154 HOH HOH . F 3 HOH B 79 1156 1156 HOH HOH . F 3 HOH B 80 1157 1157 HOH HOH . F 3 HOH B 81 1158 1158 HOH HOH . F 3 HOH B 82 1159 1159 HOH HOH . F 3 HOH B 83 1164 1164 HOH HOH . F 3 HOH B 84 1165 1165 HOH HOH . F 3 HOH B 85 1166 1166 HOH HOH . F 3 HOH B 86 1167 1167 HOH HOH . F 3 HOH B 87 1169 1169 HOH HOH . F 3 HOH B 88 1172 1172 HOH HOH . F 3 HOH B 89 1173 1173 HOH HOH . F 3 HOH B 90 1174 1174 HOH HOH . F 3 HOH B 91 1175 1175 HOH HOH . F 3 HOH B 92 1179 1179 HOH HOH . F 3 HOH B 93 1181 1181 HOH HOH . F 3 HOH B 94 1183 1183 HOH HOH . F 3 HOH B 95 1185 1185 HOH HOH . F 3 HOH B 96 1186 1186 HOH HOH . F 3 HOH B 97 1201 1201 HOH HOH . F 3 HOH B 98 1202 1202 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 ZYI . . . D 2 34.163 12.212 41.564 1 28.78 ? N1 ZYI 2 B 1 HETATM 2 C C2 ZYI . . . D 2 35.279 12.232 42.256 1 27.41 ? C2 ZYI 2 B 1 HETATM 3 O O3 ZYI . . . D 2 35.176 11.63 43.477 1 26.16 ? O3 ZYI 2 B 1 HETATM 4 C C4 ZYI . . . D 2 33.908 11.198 43.537 1 26.29 ? C4 ZYI 2 B 1 HETATM 5 C C5 ZYI . . . D 2 33.294 10.517 44.581 1 28.7 ? C5 ZYI 2 B 1 HETATM 6 C C6 ZYI . . . D 2 31.939 10.177 44.388 1 30.23 ? C6 ZYI 2 B 1 HETATM 7 C C7 ZYI . . . D 2 31.273 10.522 43.225 1 30.36 ? C7 ZYI 2 B 1 HETATM 8 CL CL8 ZYI . . . D 2 29.594 10.109 43.037 1 33.45 ? CL8 ZYI 2 B 1 HETATM 9 C C9 ZYI . . . D 2 31.938 11.212 42.201 1 29.14 ? C9 ZYI 2 B 1 HETATM 10 C C10 ZYI . . . D 2 33.285 11.558 42.379 1 28.36 ? C10 ZYI 2 B 1 HETATM 11 N N11 ZYI . . . D 2 36.481 12.793 41.841 1 26.31 ? N11 ZYI 2 B 1 HETATM 12 C C12 ZYI . . . D 2 36.563 14.152 41.491 1 24.73 ? C12 ZYI 2 B 1 HETATM 13 C C13 ZYI . . . D 2 38.012 14.608 41.378 1 19.09 ? C13 ZYI 2 B 1 HETATM 14 C C14 ZYI . . . D 2 38.176 15.984 40.768 1 14.18 ? C14 ZYI 2 B 1 HETATM 15 C C15 ZYI . . . D 2 37.695 16.079 39.331 1 11.34 ? C15 ZYI 2 B 1 HETATM 16 C C16 ZYI . . . D 2 38.883 15.596 38.502 1 16.02 ? C16 ZYI 2 B 1 HETATM 17 C C17 ZYI . . . D 2 40.129 15.838 39.357 1 16 ? C17 ZYI 2 B 1 HETATM 18 C C18 ZYI . . . D 2 39.626 16.451 40.66 1 16.58 ? C18 ZYI 2 B 1 HETATM 19 O O19 ZYI . . . D 2 35.607 14.923 41.294 1 22.7 ? O19 ZYI 2 B 1 # _model_server_stats.io_time_ms 52 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 329 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 19 #