data_3PDJ # _model_server_result.job_id Si-R5ijIv7vCmW_wlRl9oA _model_server_result.datetime_utc '2024-12-22 01:35:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3pdj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":2}' # _entry.id 3PDJ # _exptl.entry_id 3PDJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 502.568 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-[trans-4-(3-amino-3-oxopropyl)-4-phenylcyclohexyl]-N-cyclopropyl-4-[(1S)-2,2,2-trifluoro-1-hydroxy-1-methylethyl]benzamide _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3PDJ _cell.length_a 107.044 _cell.length_b 107.044 _cell.length_c 132.918 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3PDJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA tetrameric 4 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H 1 1 A,B,C,D,E,F,G,H 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_554 x-y,-y,-z-1/3 1 0 0 0 -1 0 0 0 -1 0 0 -44.306 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # _chem_comp.formula 'C28 H33 F3 N2 O3' _chem_comp.formula_weight 502.568 _chem_comp.id 3PJ _chem_comp.mon_nstd_flag . _chem_comp.name N-[trans-4-(3-amino-3-oxopropyl)-4-phenylcyclohexyl]-N-cyclopropyl-4-[(1S)-2,2,2-trifluoro-1-hydroxy-1-methylethyl]benzamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms N-((1r,4S)-4-(3-amino-3-oxopropyl)-4-phenylcyclohexyl)-N-cyclopropyl-4-((S)-1,1,1-trifluoro-2-hydroxypropan-2-yl)benzamide # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C12 3PJ sing 1 n n N1 HN1 3PJ sing 2 n n N1 HN1A 3PJ sing 3 n n CAV C2 3PJ doub 4 n y C2 CBV 3PJ sing 5 n y C2 H2 3PJ sing 6 n n CBW C4 3PJ sing 7 n n C4 CAV 3PJ sing 8 n y C4 C5 3PJ doub 9 n y C5 C6 3PJ sing 10 n y C5 H5 3PJ sing 11 n n C6 CBV 3PJ doub 12 n y C6 H6 3PJ sing 13 n n CBZ C8 3PJ sing 14 n n F22 C8 3PJ sing 15 n n C8 F21 3PJ sing 16 n n C8 F23 3PJ sing 17 n n C12 C10 3PJ sing 18 n n C10 C32 3PJ sing 19 n n C10 H10 3PJ sing 20 n n C10 H10A 3PJ sing 21 n n CBZ O10 3PJ sing 22 n n O10 HO10 3PJ sing 23 n n C12 OAI 3PJ doub 24 n n C15 N12 3PJ sing 25 n n CBW N12 3PJ sing 26 n n N12 C14 3PJ sing 27 n n O13 CBW 3PJ doub 28 n n C16 C14 3PJ sing 29 n n C14 C20 3PJ sing 30 n n C14 H14 3PJ sing 31 n n C24 C15 3PJ sing 32 n n C25 C15 3PJ sing 33 n n C15 H15 3PJ sing 34 n n C16 C17 3PJ sing 35 n n C16 H16 3PJ sing 36 n n C16 H16A 3PJ sing 37 n n C17 C18 3PJ sing 38 n n C17 H17 3PJ sing 39 n n C17 H17A 3PJ sing 40 n n C32 C18 3PJ sing 41 n n C18 C19 3PJ sing 42 n n C18 C26 3PJ sing 43 n n C20 C19 3PJ sing 44 n n C19 H19 3PJ sing 45 n n C19 H19A 3PJ sing 46 n n C20 H20 3PJ sing 47 n n C20 H20A 3PJ sing 48 n n C24 C25 3PJ sing 49 n n C24 H24 3PJ sing 50 n n C24 H24A 3PJ sing 51 n n C25 H25 3PJ sing 52 n n C25 H25A 3PJ sing 53 n n C26 CAW 3PJ doub 54 n y C26 C27 3PJ sing 55 n y C27 C28 3PJ doub 56 n y C27 H27 3PJ sing 57 n n C28 C29 3PJ sing 58 n y C28 H28 3PJ sing 59 n n C30 C29 3PJ doub 60 n y C29 H29 3PJ sing 61 n n CAW C30 3PJ sing 62 n y C30 H30 3PJ sing 63 n n C32 H32 3PJ sing 64 n n C32 H32A 3PJ sing 65 n n CAV HAV 3PJ sing 66 n n CAW HAW 3PJ sing 67 n n CBU CBZ 3PJ sing 68 n n CBU HBU 3PJ sing 69 n n CBU HBUA 3PJ sing 70 n n CBU HBUB 3PJ sing 71 n n CBV CBZ 3PJ sing 72 n n # _atom_sites.entry_id 3PDJ _atom_sites.fract_transf_matrix[1][1] 0.009342 _atom_sites.fract_transf_matrix[1][2] 0.005394 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010787 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007523 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 3PJ A 1 1 1 3PJ 3PJ . D 3 NAP A 1 293 1 NAP NAP . E 2 3PJ B 1 2 2 3PJ 3PJ . F 3 NAP B 1 1 1 NAP NAP . G 4 HOH A 1 6 6 HOH HOH . G 4 HOH A 2 9 9 HOH HOH . G 4 HOH A 3 10 10 HOH HOH . G 4 HOH A 4 11 11 HOH HOH . G 4 HOH A 5 12 12 HOH HOH . G 4 HOH A 6 13 13 HOH HOH . G 4 HOH A 7 15 15 HOH HOH . G 4 HOH A 8 16 16 HOH HOH . G 4 HOH A 9 294 22 HOH HOH . G 4 HOH A 10 295 23 HOH HOH . G 4 HOH A 11 296 24 HOH HOH . G 4 HOH A 12 297 25 HOH HOH . G 4 HOH A 13 298 27 HOH HOH . G 4 HOH A 14 299 30 HOH HOH . G 4 HOH A 15 300 32 HOH HOH . G 4 HOH A 16 301 33 HOH HOH . G 4 HOH A 17 302 34 HOH HOH . G 4 HOH A 18 303 35 HOH HOH . G 4 HOH A 19 304 36 HOH HOH . G 4 HOH A 20 305 37 HOH HOH . G 4 HOH A 21 306 38 HOH HOH . G 4 HOH A 22 307 40 HOH HOH . G 4 HOH A 23 308 49 HOH HOH . G 4 HOH A 24 309 50 HOH HOH . G 4 HOH A 25 310 53 HOH HOH . G 4 HOH A 26 311 54 HOH HOH . G 4 HOH A 27 312 55 HOH HOH . G 4 HOH A 28 313 56 HOH HOH . G 4 HOH A 29 314 58 HOH HOH . G 4 HOH A 30 315 61 HOH HOH . G 4 HOH A 31 316 62 HOH HOH . G 4 HOH A 32 317 63 HOH HOH . G 4 HOH A 33 318 64 HOH HOH . G 4 HOH A 34 319 66 HOH HOH . G 4 HOH A 35 320 67 HOH HOH . G 4 HOH A 36 321 70 HOH HOH . G 4 HOH A 37 322 71 HOH HOH . G 4 HOH A 38 323 72 HOH HOH . G 4 HOH A 39 324 74 HOH HOH . G 4 HOH A 40 325 75 HOH HOH . G 4 HOH A 41 326 76 HOH HOH . G 4 HOH A 42 327 77 HOH HOH . G 4 HOH A 43 328 79 HOH HOH . G 4 HOH A 44 329 80 HOH HOH . G 4 HOH A 45 330 83 HOH HOH . G 4 HOH A 46 331 84 HOH HOH . G 4 HOH A 47 332 85 HOH HOH . G 4 HOH A 48 333 87 HOH HOH . G 4 HOH A 49 334 88 HOH HOH . G 4 HOH A 50 335 89 HOH HOH . G 4 HOH A 51 336 93 HOH HOH . G 4 HOH A 52 337 97 HOH HOH . G 4 HOH A 53 338 99 HOH HOH . G 4 HOH A 54 339 101 HOH HOH . G 4 HOH A 55 340 102 HOH HOH . G 4 HOH A 56 341 106 HOH HOH . G 4 HOH A 57 342 109 HOH HOH . G 4 HOH A 58 343 110 HOH HOH . G 4 HOH A 59 344 111 HOH HOH . G 4 HOH A 60 345 112 HOH HOH . G 4 HOH A 61 346 114 HOH HOH . G 4 HOH A 62 347 115 HOH HOH . G 4 HOH A 63 348 117 HOH HOH . G 4 HOH A 64 349 118 HOH HOH . G 4 HOH A 65 350 122 HOH HOH . G 4 HOH A 66 351 124 HOH HOH . G 4 HOH A 67 352 126 HOH HOH . G 4 HOH A 68 353 129 HOH HOH . G 4 HOH A 69 354 130 HOH HOH . G 4 HOH A 70 355 135 HOH HOH . G 4 HOH A 71 356 136 HOH HOH . G 4 HOH A 72 357 137 HOH HOH . G 4 HOH A 73 358 138 HOH HOH . G 4 HOH A 74 359 141 HOH HOH . G 4 HOH A 75 360 143 HOH HOH . G 4 HOH A 76 361 144 HOH HOH . G 4 HOH A 77 362 152 HOH HOH . G 4 HOH A 78 363 153 HOH HOH . G 4 HOH A 79 364 154 HOH HOH . G 4 HOH A 80 365 155 HOH HOH . G 4 HOH A 81 366 158 HOH HOH . G 4 HOH A 82 367 159 HOH HOH . G 4 HOH A 83 368 160 HOH HOH . G 4 HOH A 84 369 161 HOH HOH . G 4 HOH A 85 370 162 HOH HOH . G 4 HOH A 86 371 163 HOH HOH . G 4 HOH A 87 372 168 HOH HOH . G 4 HOH A 88 373 173 HOH HOH . G 4 HOH A 89 374 174 HOH HOH . G 4 HOH A 90 375 175 HOH HOH . G 4 HOH A 91 376 177 HOH HOH . H 4 HOH B 1 3 3 HOH HOH . H 4 HOH B 2 4 4 HOH HOH . H 4 HOH B 3 5 5 HOH HOH . H 4 HOH B 4 7 7 HOH HOH . H 4 HOH B 5 8 8 HOH HOH . H 4 HOH B 6 14 14 HOH HOH . H 4 HOH B 7 17 17 HOH HOH . H 4 HOH B 8 18 18 HOH HOH . H 4 HOH B 9 19 19 HOH HOH . H 4 HOH B 10 293 1 HOH HOH . H 4 HOH B 11 294 2 HOH HOH . H 4 HOH B 12 295 20 HOH HOH . H 4 HOH B 13 296 21 HOH HOH . H 4 HOH B 14 297 26 HOH HOH . H 4 HOH B 15 298 28 HOH HOH . H 4 HOH B 16 299 29 HOH HOH . H 4 HOH B 17 300 31 HOH HOH . H 4 HOH B 18 301 39 HOH HOH . H 4 HOH B 19 302 41 HOH HOH . H 4 HOH B 20 303 42 HOH HOH . H 4 HOH B 21 304 43 HOH HOH . H 4 HOH B 22 305 44 HOH HOH . H 4 HOH B 23 306 45 HOH HOH . H 4 HOH B 24 307 46 HOH HOH . H 4 HOH B 25 308 47 HOH HOH . H 4 HOH B 26 309 48 HOH HOH . H 4 HOH B 27 310 51 HOH HOH . H 4 HOH B 28 311 52 HOH HOH . H 4 HOH B 29 312 57 HOH HOH . H 4 HOH B 30 313 59 HOH HOH . H 4 HOH B 31 314 60 HOH HOH . H 4 HOH B 32 315 65 HOH HOH . H 4 HOH B 33 316 68 HOH HOH . H 4 HOH B 34 317 69 HOH HOH . H 4 HOH B 35 318 73 HOH HOH . H 4 HOH B 36 319 78 HOH HOH . H 4 HOH B 37 320 81 HOH HOH . H 4 HOH B 38 321 82 HOH HOH . H 4 HOH B 39 322 86 HOH HOH . H 4 HOH B 40 323 90 HOH HOH . H 4 HOH B 41 324 91 HOH HOH . H 4 HOH B 42 325 92 HOH HOH . H 4 HOH B 43 326 94 HOH HOH . H 4 HOH B 44 327 95 HOH HOH . H 4 HOH B 45 328 96 HOH HOH . H 4 HOH B 46 329 98 HOH HOH . H 4 HOH B 47 330 100 HOH HOH . H 4 HOH B 48 331 103 HOH HOH . H 4 HOH B 49 332 104 HOH HOH . H 4 HOH B 50 333 105 HOH HOH . H 4 HOH B 51 334 107 HOH HOH . H 4 HOH B 52 335 108 HOH HOH . H 4 HOH B 53 336 113 HOH HOH . H 4 HOH B 54 337 116 HOH HOH . H 4 HOH B 55 338 119 HOH HOH . H 4 HOH B 56 339 120 HOH HOH . H 4 HOH B 57 340 121 HOH HOH . H 4 HOH B 58 341 123 HOH HOH . H 4 HOH B 59 342 125 HOH HOH . H 4 HOH B 60 343 127 HOH HOH . H 4 HOH B 61 344 128 HOH HOH . H 4 HOH B 62 345 131 HOH HOH . H 4 HOH B 63 346 132 HOH HOH . H 4 HOH B 64 347 133 HOH HOH . H 4 HOH B 65 348 134 HOH HOH . H 4 HOH B 66 349 139 HOH HOH . H 4 HOH B 67 350 140 HOH HOH . H 4 HOH B 68 351 142 HOH HOH . H 4 HOH B 69 352 145 HOH HOH . H 4 HOH B 70 353 146 HOH HOH . H 4 HOH B 71 354 147 HOH HOH . H 4 HOH B 72 355 148 HOH HOH . H 4 HOH B 73 356 149 HOH HOH . H 4 HOH B 74 357 150 HOH HOH . H 4 HOH B 75 358 151 HOH HOH . H 4 HOH B 76 359 156 HOH HOH . H 4 HOH B 77 360 157 HOH HOH . H 4 HOH B 78 361 164 HOH HOH . H 4 HOH B 79 362 165 HOH HOH . H 4 HOH B 80 363 166 HOH HOH . H 4 HOH B 81 364 167 HOH HOH . H 4 HOH B 82 365 169 HOH HOH . H 4 HOH B 83 366 170 HOH HOH . H 4 HOH B 84 367 171 HOH HOH . H 4 HOH B 85 368 172 HOH HOH . H 4 HOH B 86 369 176 HOH HOH . H 4 HOH B 87 370 178 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 3PJ . . . E 2 -50.41 18.363 -30.77 1 29.92 ? N1 3PJ 2 B 1 HETATM 2 C C2 3PJ . . . E 2 -54.688 26.449 -23.977 1 35.73 ? C2 3PJ 2 B 1 HETATM 3 C C4 3PJ . . . E 2 -55.278 24.186 -24.54 1 35.16 ? C4 3PJ 2 B 1 HETATM 4 C C5 3PJ . . . E 2 -56.243 24.659 -25.426 1 35.29 ? C5 3PJ 2 B 1 HETATM 5 C C6 3PJ . . . E 2 -56.418 26.026 -25.6 1 35.88 ? C6 3PJ 2 B 1 HETATM 6 C C8 3PJ . . . E 2 -54.827 29.045 -25.938 1 38.68 ? C8 3PJ 2 B 1 HETATM 7 C C10 3PJ . . . E 2 -50.999 20.542 -29.881 1 32.22 ? C10 3PJ 2 B 1 HETATM 8 O O10 3PJ . . . E 2 -57.155 28.613 -25.728 1 39.2 ? O10 3PJ 2 B 1 HETATM 9 C C12 3PJ . . . E 2 -51.281 19.38 -30.822 1 32.87 ? C12 3PJ 2 B 1 HETATM 10 N N12 3PJ . . . E 2 -54.627 21.892 -25.414 1 36.48 ? N12 3PJ 2 B 1 HETATM 11 O O13 3PJ . . . E 2 -55.706 22.201 -23.411 1 37.67 ? O13 3PJ 2 B 1 HETATM 12 C C14 3PJ . . . E 2 -53.55 22.504 -26.219 1 34.34 ? C14 3PJ 2 B 1 HETATM 13 C C15 3PJ . . . E 2 -54.533 20.436 -25.089 1 33.87 ? C15 3PJ 2 B 1 HETATM 14 C C16 3PJ . . . E 2 -52.292 21.676 -26.395 1 34.68 ? C16 3PJ 2 B 1 HETATM 15 C C17 3PJ . . . E 2 -51.353 22.392 -27.372 1 36.36 ? C17 3PJ 2 B 1 HETATM 16 C C18 3PJ . . . E 2 -51.97 22.607 -28.765 1 35.58 ? C18 3PJ 2 B 1 HETATM 17 C C19 3PJ . . . E 2 -53.253 23.405 -28.596 1 35.09 ? C19 3PJ 2 B 1 HETATM 18 C C20 3PJ . . . E 2 -54.193 22.717 -27.596 1 36.82 ? C20 3PJ 2 B 1 HETATM 19 F F21 3PJ . . . E 2 -54.83 28.449 -27.1 1 40.21 ? F21 3PJ 2 B 1 HETATM 20 F F22 3PJ . . . E 2 -53.64 28.95 -25.384 1 41.71 ? F22 3PJ 2 B 1 HETATM 21 F F23 3PJ . . . E 2 -55.107 30.31 -26.12 1 41.46 ? F23 3PJ 2 B 1 HETATM 22 C C24 3PJ . . . E 2 -55.933 19.808 -25.221 1 31.55 ? C24 3PJ 2 B 1 HETATM 23 C C25 3PJ . . . E 2 -54.905 19.59 -26.323 1 31.41 ? C25 3PJ 2 B 1 HETATM 24 C C26 3PJ . . . E 2 -51.047 23.487 -29.581 1 38.99 ? C26 3PJ 2 B 1 HETATM 25 C C27 3PJ . . . E 2 -51.422 23.935 -30.866 1 40.81 ? C27 3PJ 2 B 1 HETATM 26 C C28 3PJ . . . E 2 -50.596 24.776 -31.614 1 40.7 ? C28 3PJ 2 B 1 HETATM 27 C C29 3PJ . . . E 2 -49.366 25.173 -31.092 1 41.67 ? C29 3PJ 2 B 1 HETATM 28 C C30 3PJ . . . E 2 -48.974 24.726 -29.824 1 42.44 ? C30 3PJ 2 B 1 HETATM 29 C C32 3PJ . . . E 2 -52.273 21.297 -29.498 1 32.63 ? C32 3PJ 2 B 1 HETATM 30 O OAI 3PJ . . . E 2 -52.254 19.382 -31.576 1 31.28 ? OAI 3PJ 2 B 1 HETATM 31 C CAV 3PJ . . . E 2 -54.51 25.072 -23.809 1 36.13 ? CAV 3PJ 2 B 1 HETATM 32 C CAW 3PJ . . . E 2 -49.813 23.895 -29.069 1 40.53 ? CAW 3PJ 2 B 1 HETATM 33 C CBU 3PJ . . . E 2 -55.999 29.113 -23.701 1 34.53 ? CBU 3PJ 2 B 1 HETATM 34 C CBV 3PJ . . . E 2 -55.641 26.937 -24.883 1 37.94 ? CBV 3PJ 2 B 1 HETATM 35 C CBW 3PJ . . . E 2 -55.166 22.708 -24.383 1 36.3 ? CBW 3PJ 2 B 1 HETATM 36 C CBZ 3PJ . . . E 2 -55.886 28.422 -25.07 1 38.05 ? CBZ 3PJ 2 B 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 886 _model_server_stats.encode_time_ms 25 _model_server_stats.element_count 36 #