data_3PDS
#
_model_server_result.job_id            BOvOsJ4gi7hem3y13xrYDQ 
_model_server_result.datetime_utc      '2025-01-10 08:37:57' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3pds 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":1201}' 
#
_entry.id    3PDS 
#
_exptl.entry_id    3PDS 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              444.544 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            8-hydroxy-5-[(1R)-1-hydroxy-2-({2-[3-methoxy-4-(3-sulfanylpropoxy)phenyl]ethyl}amino)ethyl]quinolin-2(1H)-one 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3PDS 
_cell.length_a            282.44 
_cell.length_b            40.04 
_cell.length_c            65.21 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3PDS 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 82 A CYS 106 1_555 A SG CYS 167 A CYS 191 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf2 A SG CYS 160 A CYS 184 1_555 A SG CYS 166 A CYS 190 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
covale ? covale1 A SG CYS 69 A CYS 93 1_555 B S1 ERC . A ERC 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.001 ? 
#
_chem_comp.formula           'C23 H28 N2 O5 S' 
_chem_comp.formula_weight    444.544 
_chem_comp.id                ERC 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              8-hydroxy-5-[(1R)-1-hydroxy-2-({2-[3-methoxy-4-(3-sulfanylpropoxy)phenyl]ethyl}amino)ethyl]quinolin-2(1H)-one 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 N1 ERC sing 160 n n 
C1 O1 ERC doub 161 n n 
C1 C2 ERC sing 162 n n 
N1 C5 ERC sing 163 n n 
S1 C23 ERC sing 164 n n 
C2 C3 ERC doub 165 n n 
N2 C11 ERC sing 166 n n 
N2 C12 ERC sing 167 n n 
O2 C6 ERC sing 168 n n 
C3 C4 ERC sing 169 n n 
O3 C10 ERC sing 170 n n 
C4 C5 ERC doub 171 n y 
C4 C9 ERC sing 172 n y 
O4 C18 ERC sing 173 n n 
O4 C20 ERC sing 174 n n 
C5 C6 ERC sing 175 n y 
O5 C17 ERC sing 176 n n 
O5 C21 ERC sing 177 n n 
C6 C7 ERC doub 178 n y 
C7 C8 ERC sing 179 n y 
C8 C9 ERC doub 180 n y 
C9 C10 ERC sing 181 n n 
C10 C11 ERC sing 182 n n 
C12 C13 ERC sing 183 n n 
C13 C14 ERC sing 184 n n 
C14 C15 ERC doub 185 n y 
C14 C19 ERC sing 186 n y 
C15 C16 ERC sing 187 n y 
C16 C17 ERC doub 188 n y 
C17 C18 ERC sing 189 n y 
C18 C19 ERC doub 190 n y 
C21 C22 ERC sing 191 n n 
C22 C23 ERC sing 192 n n 
N1 HN1 ERC sing 193 n n 
S1 HS1 ERC sing 194 n n 
C2 H2 ERC sing 195 n n 
N2 HN2 ERC sing 196 n n 
O2 HO2 ERC sing 197 n n 
C3 H3 ERC sing 198 n n 
O3 HO3 ERC sing 199 n n 
C7 H7 ERC sing 200 n n 
C8 H8 ERC sing 201 n n 
C10 H10 ERC sing 202 n n 
C11 H11 ERC sing 203 n n 
C11 H11A ERC sing 204 n n 
C12 H12 ERC sing 205 n n 
C12 H12A ERC sing 206 n n 
C13 H13 ERC sing 207 n n 
C13 H13A ERC sing 208 n n 
C15 H15 ERC sing 209 n n 
C16 H16 ERC sing 210 n n 
C19 H19 ERC sing 211 n n 
C20 H20 ERC sing 212 n n 
C20 H20A ERC sing 213 n n 
C20 H20B ERC sing 214 n n 
C21 H21 ERC sing 215 n n 
C21 H21A ERC sing 216 n n 
C22 H22 ERC sing 217 n n 
C22 H22A ERC sing 218 n n 
C23 H23 ERC sing 219 n n 
C23 H23A ERC sing 220 n n 
#
_atom_sites.entry_id                     3PDS 
_atom_sites.fract_transf_matrix[1][1]    0.003541 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.024975 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.015335 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 ERC A 1 1201 1201 ERC ERC . 
C 3 CLR A 1 1202 1202 CLR CLR . 
D 4 SO4 A 1 1203 1203 SO4 SO4 . 
E 4 SO4 A 1 1204 1204 SO4 SO4 . 
F 4 SO4 A 1 1205 1205 SO4 SO4 . 
G 4 SO4 A 1 1206 1206 SO4 SO4 . 
H 4 SO4 A 1 1207 1207 SO4 SO4 . 
I 4 SO4 A 1 1208 1208 SO4 SO4 . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 ERC . . . B 2 16.744 6.627 14.839 1 102.14 ? C1 ERC 1201 A 1 
HETATM 2 N N1 ERC . . . B 2 17.92 6.004 14.627 1 101.26 ? N1 ERC 1201 A 1 
HETATM 3 O O1 ERC . . . B 2 16.123 6.418 15.904 1 102.98 ? O1 ERC 1201 A 1 
HETATM 4 S S1 ERC . . . B 2 10.549 10.024 2.057 1 107.77 ? S1 ERC 1201 A 1 
HETATM 5 C C2 ERC . . . B 2 16.202 7.506 13.893 1 102.23 ? C2 ERC 1201 A 1 
HETATM 6 N N2 ERC . . . B 2 16.595 8.351 8.486 1 101.42 ? N2 ERC 1201 A 1 
HETATM 7 O O2 ERC . . . B 2 20.449 4.675 14.148 1 99.57 ? O2 ERC 1201 A 1 
HETATM 8 C C3 ERC . . . B 2 16.87 7.769 12.695 1 101.42 ? C3 ERC 1201 A 1 
HETATM 9 O O3 ERC . . . B 2 19.433 8.718 9.313 1 99.15 ? O3 ERC 1201 A 1 
HETATM 10 C C4 ERC . . . B 2 18.083 7.128 12.457 1 100.53 ? C4 ERC 1201 A 1 
HETATM 11 O O4 ERC . . . B 2 14.751 12.345 4.248 1 102.93 ? O4 ERC 1201 A 1 
HETATM 12 C C5 ERC . . . B 2 18.615 6.204 13.495 1 100.46 ? C5 ERC 1201 A 1 
HETATM 13 O O5 ERC . . . B 2 12.068 12.466 4.982 1 105.23 ? O5 ERC 1201 A 1 
HETATM 14 C C6 ERC . . . B 2 19.918 5.529 13.23 1 99.6 ? C6 ERC 1201 A 1 
HETATM 15 C C7 ERC . . . B 2 20.594 5.781 12.034 1 98.93 ? C7 ERC 1201 A 1 
HETATM 16 C C8 ERC . . . B 2 20.089 6.645 11.055 1 99.03 ? C8 ERC 1201 A 1 
HETATM 17 C C9 ERC . . . B 2 18.886 7.343 11.217 1 99.75 ? C9 ERC 1201 A 1 
HETATM 18 C C10 ERC . . . B 2 18.374 8.233 10.148 1 99.95 ? C10 ERC 1201 A 1 
HETATM 19 C C11 ERC . . . B 2 17.377 7.449 9.306 1 101.03 ? C11 ERC 1201 A 1 
HETATM 20 C C12 ERC . . . B 2 15.312 7.912 7.979 1 102.47 ? C12 ERC 1201 A 1 
HETATM 21 C C13 ERC . . . B 2 15.234 7.998 6.461 1 102.54 ? C13 ERC 1201 A 1 
HETATM 22 C C14 ERC . . . B 2 14.39 9.188 6.071 1 103.18 ? C14 ERC 1201 A 1 
HETATM 23 C C15 ERC . . . B 2 13.043 9.243 6.434 1 104.35 ? C15 ERC 1201 A 1 
HETATM 24 C C16 ERC . . . B 2 12.268 10.345 6.067 1 105.02 ? C16 ERC 1201 A 1 
HETATM 25 C C17 ERC . . . B 2 12.838 11.387 5.332 1 104.5 ? C17 ERC 1201 A 1 
HETATM 26 C C18 ERC . . . B 2 14.182 11.331 4.972 1 103.35 ? C18 ERC 1201 A 1 
HETATM 27 C C19 ERC . . . B 2 14.959 10.232 5.341 1 102.69 ? C19 ERC 1201 A 1 
HETATM 28 C C20 ERC . . . B 2 14.982 12.166 2.852 1 102.88 ? C20 ERC 1201 A 1 
HETATM 29 C C21 ERC . . . B 2 11.626 12.627 3.636 1 105.97 ? C21 ERC 1201 A 1 
HETATM 30 C C22 ERC . . . B 2 10.153 12.248 3.534 1 107.53 ? C22 ERC 1201 A 1 
HETATM 31 C C23 ERC . . . B 2 9.965 10.735 3.561 1 107.73 ? C23 ERC 1201 A 1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           317 
_model_server_stats.encode_time_ms          15 
_model_server_stats.element_count           31 
#