data_3PDY
#
_model_server_result.job_id            pDfsyRiqbrc-b7zwpeUs-A 
_model_server_result.datetime_utc      '2024-10-25 20:23:13' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3pdy 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":201}' 
#
_entry.id    3PDY 
#
_exptl.entry_id    3PDY 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3PDY 
_cell.length_a            97.42 
_cell.length_b            119.4 
_cell.length_c            44.58 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3PDY 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
PISA dimeric 2 software_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E 1 1 
B,F 2 1 
A,C,D,E 3 1 
B,F 3 2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 3_556 -x+1/2,y+1/2,-z+1 -1 0 0 0 1 0 0 0 -1 48.71 59.7 44.58 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 83 n n 
C1 C2 EDO sing 84 n n 
C1 H11 EDO sing 85 n n 
C1 H12 EDO sing 86 n n 
O1 HO1 EDO sing 87 n n 
C2 O2 EDO sing 88 n n 
C2 H21 EDO sing 89 n n 
C2 H22 EDO sing 90 n n 
O2 HO2 EDO sing 91 n n 
#
_atom_sites.entry_id                     3PDY 
_atom_sites.fract_transf_matrix[1][1]    0.010265 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008375 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.022432 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 EDO A 1 201 201 EDO EDO . 
D 3 PEG A 1 202 202 PEG PEG . 
E 4 HOH A 1 1 1 HOH HOH . 
E 4 HOH A 2 2 2 HOH HOH . 
E 4 HOH A 3 3 3 HOH HOH . 
E 4 HOH A 4 4 4 HOH HOH . 
E 4 HOH A 5 5 5 HOH HOH . 
E 4 HOH A 6 6 6 HOH HOH . 
E 4 HOH A 7 7 7 HOH HOH . 
E 4 HOH A 8 8 8 HOH HOH . 
E 4 HOH A 9 9 9 HOH HOH . 
E 4 HOH A 10 10 10 HOH HOH . 
E 4 HOH A 11 11 11 HOH HOH . 
E 4 HOH A 12 12 12 HOH HOH . 
E 4 HOH A 13 13 13 HOH HOH . 
E 4 HOH A 14 14 14 HOH HOH . 
E 4 HOH A 15 15 15 HOH HOH . 
E 4 HOH A 16 16 16 HOH HOH . 
E 4 HOH A 17 17 17 HOH HOH . 
E 4 HOH A 18 18 18 HOH HOH . 
E 4 HOH A 19 19 19 HOH HOH . 
E 4 HOH A 20 20 20 HOH HOH . 
E 4 HOH A 21 21 21 HOH HOH . 
E 4 HOH A 22 22 22 HOH HOH . 
E 4 HOH A 23 23 23 HOH HOH . 
E 4 HOH A 24 24 24 HOH HOH . 
E 4 HOH A 25 25 25 HOH HOH . 
E 4 HOH A 26 26 26 HOH HOH . 
E 4 HOH A 27 27 27 HOH HOH . 
E 4 HOH A 28 28 28 HOH HOH . 
E 4 HOH A 29 29 29 HOH HOH . 
E 4 HOH A 30 30 30 HOH HOH . 
E 4 HOH A 31 31 31 HOH HOH . 
E 4 HOH A 32 32 32 HOH HOH . 
E 4 HOH A 33 33 33 HOH HOH . 
E 4 HOH A 34 34 34 HOH HOH . 
E 4 HOH A 35 35 35 HOH HOH . 
E 4 HOH A 36 36 36 HOH HOH . 
E 4 HOH A 37 37 37 HOH HOH . 
E 4 HOH A 38 38 38 HOH HOH . 
E 4 HOH A 39 39 39 HOH HOH . 
E 4 HOH A 40 40 40 HOH HOH . 
E 4 HOH A 41 41 41 HOH HOH . 
E 4 HOH A 42 42 42 HOH HOH . 
E 4 HOH A 43 43 43 HOH HOH . 
E 4 HOH A 44 44 44 HOH HOH . 
E 4 HOH A 45 45 45 HOH HOH . 
E 4 HOH A 46 46 46 HOH HOH . 
E 4 HOH A 47 47 47 HOH HOH . 
E 4 HOH A 48 48 48 HOH HOH . 
E 4 HOH A 49 49 49 HOH HOH . 
E 4 HOH A 50 50 50 HOH HOH . 
E 4 HOH A 51 51 51 HOH HOH . 
E 4 HOH A 52 52 52 HOH HOH . 
E 4 HOH A 53 53 53 HOH HOH . 
E 4 HOH A 54 54 54 HOH HOH . 
E 4 HOH A 55 55 55 HOH HOH . 
E 4 HOH A 56 56 56 HOH HOH . 
E 4 HOH A 57 57 57 HOH HOH . 
E 4 HOH A 58 58 58 HOH HOH . 
E 4 HOH A 59 59 59 HOH HOH . 
E 4 HOH A 60 60 60 HOH HOH . 
E 4 HOH A 61 61 61 HOH HOH . 
E 4 HOH A 62 62 62 HOH HOH . 
E 4 HOH A 63 63 63 HOH HOH . 
E 4 HOH A 64 64 64 HOH HOH . 
E 4 HOH A 65 65 65 HOH HOH . 
E 4 HOH A 66 66 66 HOH HOH . 
E 4 HOH A 67 67 67 HOH HOH . 
E 4 HOH A 68 68 68 HOH HOH . 
E 4 HOH A 69 69 69 HOH HOH . 
E 4 HOH A 70 70 70 HOH HOH . 
E 4 HOH A 71 71 71 HOH HOH . 
E 4 HOH A 72 72 72 HOH HOH . 
E 4 HOH A 73 73 73 HOH HOH . 
E 4 HOH A 74 74 74 HOH HOH . 
E 4 HOH A 75 75 75 HOH HOH . 
E 4 HOH A 76 76 76 HOH HOH . 
E 4 HOH A 77 77 77 HOH HOH . 
E 4 HOH A 78 78 78 HOH HOH . 
E 4 HOH A 79 79 79 HOH HOH . 
E 4 HOH A 80 80 80 HOH HOH . 
E 4 HOH A 81 81 81 HOH HOH . 
E 4 HOH A 82 82 82 HOH HOH . 
E 4 HOH A 83 83 83 HOH HOH . 
E 4 HOH A 84 84 84 HOH HOH . 
E 4 HOH A 85 85 85 HOH HOH . 
E 4 HOH A 86 86 86 HOH HOH . 
E 4 HOH A 87 87 87 HOH HOH . 
E 4 HOH A 88 88 88 HOH HOH . 
E 4 HOH A 89 89 89 HOH HOH . 
E 4 HOH A 90 90 90 HOH HOH . 
E 4 HOH A 91 91 91 HOH HOH . 
E 4 HOH A 92 92 92 HOH HOH . 
E 4 HOH A 93 93 93 HOH HOH . 
E 4 HOH A 94 94 94 HOH HOH . 
E 4 HOH A 95 95 95 HOH HOH . 
E 4 HOH A 96 96 96 HOH HOH . 
E 4 HOH A 97 97 97 HOH HOH . 
E 4 HOH A 98 98 98 HOH HOH . 
E 4 HOH A 99 99 99 HOH HOH . 
E 4 HOH A 100 100 100 HOH HOH . 
E 4 HOH A 101 101 101 HOH HOH . 
E 4 HOH A 102 102 102 HOH HOH . 
E 4 HOH A 103 103 103 HOH HOH . 
E 4 HOH A 104 104 104 HOH HOH . 
E 4 HOH A 105 105 105 HOH HOH . 
E 4 HOH A 106 106 106 HOH HOH . 
E 4 HOH A 107 107 107 HOH HOH . 
E 4 HOH A 108 108 108 HOH HOH . 
E 4 HOH A 109 109 109 HOH HOH . 
E 4 HOH A 110 110 110 HOH HOH . 
E 4 HOH A 111 111 111 HOH HOH . 
E 4 HOH A 112 112 112 HOH HOH . 
E 4 HOH A 113 113 113 HOH HOH . 
E 4 HOH A 114 114 114 HOH HOH . 
E 4 HOH A 115 115 115 HOH HOH . 
E 4 HOH A 116 116 116 HOH HOH . 
E 4 HOH A 117 117 117 HOH HOH . 
E 4 HOH A 118 118 118 HOH HOH . 
E 4 HOH A 119 119 119 HOH HOH . 
E 4 HOH A 120 749 52 HOH HOH . 
E 4 HOH A 121 750 62 HOH HOH . 
E 4 HOH A 122 751 63 HOH HOH . 
F 4 HOH B 1 1 1 HOH HOH . 
F 4 HOH B 2 2 2 HOH HOH . 
F 4 HOH B 3 3 3 HOH HOH . 
F 4 HOH B 4 4 4 HOH HOH . 
F 4 HOH B 5 5 5 HOH HOH . 
F 4 HOH B 6 6 6 HOH HOH . 
F 4 HOH B 7 7 7 HOH HOH . 
F 4 HOH B 8 8 8 HOH HOH . 
F 4 HOH B 9 9 9 HOH HOH . 
F 4 HOH B 10 10 10 HOH HOH . 
F 4 HOH B 11 11 11 HOH HOH . 
F 4 HOH B 12 12 12 HOH HOH . 
F 4 HOH B 13 13 13 HOH HOH . 
F 4 HOH B 14 14 14 HOH HOH . 
F 4 HOH B 15 15 15 HOH HOH . 
F 4 HOH B 16 16 16 HOH HOH . 
F 4 HOH B 17 17 17 HOH HOH . 
F 4 HOH B 18 18 18 HOH HOH . 
F 4 HOH B 19 19 19 HOH HOH . 
F 4 HOH B 20 20 20 HOH HOH . 
F 4 HOH B 21 21 21 HOH HOH . 
F 4 HOH B 22 22 22 HOH HOH . 
F 4 HOH B 23 23 23 HOH HOH . 
F 4 HOH B 24 24 24 HOH HOH . 
F 4 HOH B 25 25 25 HOH HOH . 
F 4 HOH B 26 26 26 HOH HOH . 
F 4 HOH B 27 27 27 HOH HOH . 
F 4 HOH B 28 28 28 HOH HOH . 
F 4 HOH B 29 29 29 HOH HOH . 
F 4 HOH B 30 30 30 HOH HOH . 
F 4 HOH B 31 31 31 HOH HOH . 
F 4 HOH B 32 32 32 HOH HOH . 
F 4 HOH B 33 33 33 HOH HOH . 
F 4 HOH B 34 34 34 HOH HOH . 
F 4 HOH B 35 35 35 HOH HOH . 
F 4 HOH B 36 36 36 HOH HOH . 
F 4 HOH B 37 37 37 HOH HOH . 
F 4 HOH B 38 38 38 HOH HOH . 
F 4 HOH B 39 39 39 HOH HOH . 
F 4 HOH B 40 40 40 HOH HOH . 
F 4 HOH B 41 41 41 HOH HOH . 
F 4 HOH B 42 42 42 HOH HOH . 
F 4 HOH B 43 43 43 HOH HOH . 
F 4 HOH B 44 44 44 HOH HOH . 
F 4 HOH B 45 45 45 HOH HOH . 
F 4 HOH B 46 46 46 HOH HOH . 
F 4 HOH B 47 47 47 HOH HOH . 
F 4 HOH B 48 48 48 HOH HOH . 
F 4 HOH B 49 49 49 HOH HOH . 
F 4 HOH B 50 50 50 HOH HOH . 
F 4 HOH B 51 51 51 HOH HOH . 
F 4 HOH B 52 53 53 HOH HOH . 
F 4 HOH B 53 54 54 HOH HOH . 
F 4 HOH B 54 55 55 HOH HOH . 
F 4 HOH B 55 56 56 HOH HOH . 
F 4 HOH B 56 57 57 HOH HOH . 
F 4 HOH B 57 58 58 HOH HOH . 
F 4 HOH B 58 59 59 HOH HOH . 
F 4 HOH B 59 60 60 HOH HOH . 
F 4 HOH B 60 61 61 HOH HOH . 
F 4 HOH B 61 64 64 HOH HOH . 
F 4 HOH B 62 65 65 HOH HOH . 
F 4 HOH B 63 66 66 HOH HOH . 
F 4 HOH B 64 67 67 HOH HOH . 
F 4 HOH B 65 68 68 HOH HOH . 
F 4 HOH B 66 69 69 HOH HOH . 
F 4 HOH B 67 70 70 HOH HOH . 
F 4 HOH B 68 71 71 HOH HOH . 
F 4 HOH B 69 72 72 HOH HOH . 
F 4 HOH B 70 73 73 HOH HOH . 
F 4 HOH B 71 74 74 HOH HOH . 
F 4 HOH B 72 75 75 HOH HOH . 
F 4 HOH B 73 76 76 HOH HOH . 
F 4 HOH B 74 77 77 HOH HOH . 
F 4 HOH B 75 78 78 HOH HOH . 
F 4 HOH B 76 79 79 HOH HOH . 
F 4 HOH B 77 80 80 HOH HOH . 
F 4 HOH B 78 81 81 HOH HOH . 
F 4 HOH B 79 82 82 HOH HOH . 
F 4 HOH B 80 83 83 HOH HOH . 
F 4 HOH B 81 84 84 HOH HOH . 
F 4 HOH B 82 85 85 HOH HOH . 
F 4 HOH B 83 86 86 HOH HOH . 
F 4 HOH B 84 87 87 HOH HOH . 
F 4 HOH B 85 88 88 HOH HOH . 
F 4 HOH B 86 89 89 HOH HOH . 
F 4 HOH B 87 90 90 HOH HOH . 
F 4 HOH B 88 91 91 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . C 2 45.541 30.125 -0.95 1 50.12 ? C1 EDO 201 A 1 
HETATM 2 O O1 EDO . . . C 2 45.671 30.617 -2.289 1 50.33 ? O1 EDO 201 A 1 
HETATM 3 C C2 EDO . . . C 2 44.538 28.967 -0.911 1 48.31 ? C2 EDO 201 A 1 
HETATM 4 O O2 EDO . . . C 2 44.416 28.471 0.436 1 46.08 ? O2 EDO 201 A 1 
#
_model_server_stats.io_time_ms              75 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           292 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           4 
#