data_3PEB # _model_server_result.job_id RMIh7-qYGBKPkwCPrey5zg _model_server_result.datetime_utc '2024-11-18 08:49:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3peb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":138}' # _entry.id 3PEB # _exptl.entry_id 3PEB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 10 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3PEB _cell.length_a 70.503 _cell.length_b 70.503 _cell.length_c 160.388 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3PEB _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N ? 3 F N N ? 3 G N N ? 3 H N N ? 3 I N N ? 3 J N N ? 3 K N N ? 3 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ALA 3 A ALA 0 1_555 A N MSE 4 A MSE 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale2 A C MSE 4 A MSE 1 1_555 A N SER 5 A SER 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale3 A C GLN 44 A GLN 41 1_555 A N MSE 45 A MSE 42 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale4 A C MSE 45 A MSE 42 1_555 A N PHE 46 A PHE 43 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale5 A C LYS 132 A LYS 129 1_555 A N MSE 133 A MSE 130 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale6 A C MSE 133 A MSE 130 1_555 A N ARG 134 A ARG 131 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? metalc ? metalc1 A O PHE 119 A PHE 116 1_555 M NA NA . A NA 146 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.319 ? metalc ? metalc2 N NA NA . A NA 147 1_555 O O HOH . A HOH 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.321 ? metalc ? metalc3 A O LEU 71 A LEU 68 1_555 N NA NA . A NA 147 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.342 ? metalc ? metalc4 M NA NA . A NA 146 1_555 O O HOH . A HOH 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.345 ? metalc ? metalc5 A O SER 68 A SER 65 1_555 N NA NA . A NA 147 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.387 ? metalc ? metalc6 M NA NA . A NA 146 1_555 O O HOH . A HOH 267 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.423 ? metalc ? metalc7 N NA NA . A NA 147 1_555 O O HOH . A HOH 278 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.447 ? metalc ? metalc8 N NA NA . A NA 147 1_555 O O HOH . A HOH 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.479 ? metalc ? metalc9 N NA NA . A NA 147 1_555 O O HOH . A HOH 279 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.492 ? metalc ? metalc10 M NA NA . A NA 146 1_555 O O HOH . A HOH 262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.548 ? metalc ? metalc11 A O GLN 116 A GLN 113 1_555 M NA NA . A NA 146 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.552 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # _atom_sites.entry_id 3PEB _atom_sites.fract_transf_matrix[1][1] 0.014184 _atom_sites.fract_transf_matrix[1][2] 0.008189 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016378 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006235 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NHE A 1 135 1 NHE NHE . C 3 EDO A 1 136 1 EDO EDO . D 3 EDO A 1 137 1 EDO EDO . E 3 EDO A 1 138 1 EDO EDO . F 3 EDO A 1 139 1 EDO EDO . G 3 EDO A 1 140 1 EDO EDO . H 3 EDO A 1 141 1 EDO EDO . I 3 EDO A 1 142 1 EDO EDO . J 3 EDO A 1 143 1 EDO EDO . K 3 EDO A 1 144 1 EDO EDO . L 3 EDO A 1 145 1 EDO EDO . M 4 NA A 1 146 1 NA NA . N 4 NA A 1 147 1 NA NA . O 5 HOH A 1 148 148 HOH HOH . O 5 HOH A 2 149 149 HOH HOH . O 5 HOH A 3 150 150 HOH HOH . O 5 HOH A 4 151 151 HOH HOH . O 5 HOH A 5 152 152 HOH HOH . O 5 HOH A 6 153 153 HOH HOH . O 5 HOH A 7 154 154 HOH HOH . O 5 HOH A 8 155 155 HOH HOH . O 5 HOH A 9 156 156 HOH HOH . O 5 HOH A 10 157 157 HOH HOH . O 5 HOH A 11 158 158 HOH HOH . O 5 HOH A 12 159 159 HOH HOH . O 5 HOH A 13 160 160 HOH HOH . O 5 HOH A 14 161 1 HOH HOH . O 5 HOH A 15 162 2 HOH HOH . O 5 HOH A 16 163 3 HOH HOH . O 5 HOH A 17 164 4 HOH HOH . O 5 HOH A 18 165 5 HOH HOH . O 5 HOH A 19 166 6 HOH HOH . O 5 HOH A 20 167 7 HOH HOH . O 5 HOH A 21 168 8 HOH HOH . O 5 HOH A 22 169 9 HOH HOH . O 5 HOH A 23 170 10 HOH HOH . O 5 HOH A 24 171 11 HOH HOH . O 5 HOH A 25 172 12 HOH HOH . O 5 HOH A 26 173 13 HOH HOH . O 5 HOH A 27 174 14 HOH HOH . O 5 HOH A 28 175 15 HOH HOH . O 5 HOH A 29 176 16 HOH HOH . O 5 HOH A 30 177 17 HOH HOH . O 5 HOH A 31 178 18 HOH HOH . O 5 HOH A 32 179 19 HOH HOH . O 5 HOH A 33 180 20 HOH HOH . O 5 HOH A 34 181 21 HOH HOH . O 5 HOH A 35 182 22 HOH HOH . O 5 HOH A 36 183 23 HOH HOH . O 5 HOH A 37 184 24 HOH HOH . O 5 HOH A 38 185 25 HOH HOH . O 5 HOH A 39 186 26 HOH HOH . O 5 HOH A 40 187 27 HOH HOH . O 5 HOH A 41 188 28 HOH HOH . O 5 HOH A 42 189 29 HOH HOH . O 5 HOH A 43 190 30 HOH HOH . O 5 HOH A 44 191 31 HOH HOH . O 5 HOH A 45 192 32 HOH HOH . O 5 HOH A 46 193 33 HOH HOH . O 5 HOH A 47 194 34 HOH HOH . O 5 HOH A 48 195 35 HOH HOH . O 5 HOH A 49 196 36 HOH HOH . O 5 HOH A 50 197 37 HOH HOH . O 5 HOH A 51 198 38 HOH HOH . O 5 HOH A 52 199 39 HOH HOH . O 5 HOH A 53 200 40 HOH HOH . O 5 HOH A 54 201 41 HOH HOH . O 5 HOH A 55 202 42 HOH HOH . O 5 HOH A 56 203 43 HOH HOH . O 5 HOH A 57 204 44 HOH HOH . O 5 HOH A 58 205 45 HOH HOH . O 5 HOH A 59 206 46 HOH HOH . O 5 HOH A 60 207 47 HOH HOH . O 5 HOH A 61 208 48 HOH HOH . O 5 HOH A 62 209 49 HOH HOH . O 5 HOH A 63 210 50 HOH HOH . O 5 HOH A 64 211 51 HOH HOH . O 5 HOH A 65 212 52 HOH HOH . O 5 HOH A 66 213 53 HOH HOH . O 5 HOH A 67 214 54 HOH HOH . O 5 HOH A 68 215 55 HOH HOH . O 5 HOH A 69 216 56 HOH HOH . O 5 HOH A 70 217 57 HOH HOH . O 5 HOH A 71 218 58 HOH HOH . O 5 HOH A 72 219 59 HOH HOH . O 5 HOH A 73 220 60 HOH HOH . O 5 HOH A 74 221 61 HOH HOH . O 5 HOH A 75 222 62 HOH HOH . O 5 HOH A 76 223 63 HOH HOH . O 5 HOH A 77 224 64 HOH HOH . O 5 HOH A 78 225 65 HOH HOH . O 5 HOH A 79 226 66 HOH HOH . O 5 HOH A 80 227 67 HOH HOH . O 5 HOH A 81 228 68 HOH HOH . O 5 HOH A 82 229 69 HOH HOH . O 5 HOH A 83 230 70 HOH HOH . O 5 HOH A 84 231 71 HOH HOH . O 5 HOH A 85 232 72 HOH HOH . O 5 HOH A 86 233 73 HOH HOH . O 5 HOH A 87 234 74 HOH HOH . O 5 HOH A 88 235 75 HOH HOH . O 5 HOH A 89 236 76 HOH HOH . O 5 HOH A 90 237 77 HOH HOH . O 5 HOH A 91 238 78 HOH HOH . O 5 HOH A 92 239 79 HOH HOH . O 5 HOH A 93 240 80 HOH HOH . O 5 HOH A 94 241 81 HOH HOH . O 5 HOH A 95 242 82 HOH HOH . O 5 HOH A 96 243 83 HOH HOH . O 5 HOH A 97 244 84 HOH HOH . O 5 HOH A 98 245 85 HOH HOH . O 5 HOH A 99 246 86 HOH HOH . O 5 HOH A 100 247 87 HOH HOH . O 5 HOH A 101 248 88 HOH HOH . O 5 HOH A 102 249 89 HOH HOH . O 5 HOH A 103 250 90 HOH HOH . O 5 HOH A 104 251 91 HOH HOH . O 5 HOH A 105 252 92 HOH HOH . O 5 HOH A 106 253 93 HOH HOH . O 5 HOH A 107 254 94 HOH HOH . O 5 HOH A 108 255 95 HOH HOH . O 5 HOH A 109 256 96 HOH HOH . O 5 HOH A 110 257 97 HOH HOH . O 5 HOH A 111 258 98 HOH HOH . O 5 HOH A 112 259 99 HOH HOH . O 5 HOH A 113 260 100 HOH HOH . O 5 HOH A 114 261 101 HOH HOH . O 5 HOH A 115 262 102 HOH HOH . O 5 HOH A 116 263 103 HOH HOH . O 5 HOH A 117 264 104 HOH HOH . O 5 HOH A 118 265 105 HOH HOH . O 5 HOH A 119 266 106 HOH HOH . O 5 HOH A 120 267 107 HOH HOH . O 5 HOH A 121 268 108 HOH HOH . O 5 HOH A 122 269 109 HOH HOH . O 5 HOH A 123 270 110 HOH HOH . O 5 HOH A 124 271 111 HOH HOH . O 5 HOH A 125 272 112 HOH HOH . O 5 HOH A 126 273 113 HOH HOH . O 5 HOH A 127 274 114 HOH HOH . O 5 HOH A 128 275 115 HOH HOH . O 5 HOH A 129 276 116 HOH HOH . O 5 HOH A 130 277 117 HOH HOH . O 5 HOH A 131 278 118 HOH HOH . O 5 HOH A 132 279 119 HOH HOH . O 5 HOH A 133 280 120 HOH HOH . O 5 HOH A 134 281 121 HOH HOH . O 5 HOH A 135 282 122 HOH HOH . O 5 HOH A 136 283 123 HOH HOH . O 5 HOH A 137 284 124 HOH HOH . O 5 HOH A 138 285 125 HOH HOH . O 5 HOH A 139 286 126 HOH HOH . O 5 HOH A 140 287 127 HOH HOH . O 5 HOH A 141 288 128 HOH HOH . O 5 HOH A 142 289 129 HOH HOH . O 5 HOH A 143 290 130 HOH HOH . O 5 HOH A 144 291 131 HOH HOH . O 5 HOH A 145 292 132 HOH HOH . O 5 HOH A 146 293 133 HOH HOH . O 5 HOH A 147 294 134 HOH HOH . O 5 HOH A 148 295 135 HOH HOH . O 5 HOH A 149 296 136 HOH HOH . O 5 HOH A 150 297 137 HOH HOH . O 5 HOH A 151 298 138 HOH HOH . O 5 HOH A 152 299 139 HOH HOH . O 5 HOH A 153 300 140 HOH HOH . O 5 HOH A 154 301 141 HOH HOH . O 5 HOH A 155 302 142 HOH HOH . O 5 HOH A 156 303 143 HOH HOH . O 5 HOH A 157 304 144 HOH HOH . O 5 HOH A 158 305 145 HOH HOH . O 5 HOH A 159 306 146 HOH HOH . O 5 HOH A 160 307 147 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . E 3 21.729 28.33 -12.59 0.5 57.72 ? C1 EDO 138 A 1 HETATM 2 O O1 EDO . . . E 3 22.157 27.138 -11.924 0.5 58.33 ? O1 EDO 138 A 1 HETATM 3 C C2 EDO . . . E 3 21.516 28.076 -14.075 0.5 57.7 ? C2 EDO 138 A 1 HETATM 4 O O2 EDO . . . E 3 22.726 28.284 -14.809 0.5 58.17 ? O2 EDO 138 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 330 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 4 #