data_3PEC # _model_server_result.job_id z6ko3sfzKYusOchVNE1Uhw _model_server_result.datetime_utc '2024-11-28 19:09:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3pec # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":181}' # _entry.id 3PEC # _exptl.entry_id 3PEC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 7 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3PEC _cell.length_a 114.2 _cell.length_b 114.2 _cell.length_c 119.3 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3PEC _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 ? monomeric 1 author_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,E,F,G,H,T 1 1 B,U 2 1 C,I,J,K,L,M,N,O,P,Q,R,S,V 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 D N N ? 2 E N N ? 2 F N N ? 2 G N N ? 2 J N N ? 2 K N N ? 2 S N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 76 A CYS 76 1_555 A SG CYS 175 A CYS 175 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf2 B SG CYS 76 B CYS 76 1_555 B SG CYS 175 B CYS 175 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf3 C SG CYS 76 C CYS 76 1_555 C SG CYS 175 C CYS 175 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? metalc ? metalc1 T O HOH . A HOH 225 1_555 M NA NA . C NA 183 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.042 ? metalc ? metalc2 C OD1 ASN 21 C ASN 21 1_555 M NA NA . C NA 183 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.139 ? metalc ? metalc3 C O PHE 22 C PHE 22 1_555 M NA NA . C NA 183 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.915 ? metalc ? metalc4 C OG SER 112 C SER 112 1_555 N NA NA . C NA 184 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.067 ? metalc ? metalc5 I FE FE . C FE 179 1_555 R O44 ZYG . C ZYG 188 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.86 ? metalc ? metalc6 I FE FE . C FE 179 1_555 R O2 ZYG . C ZYG 188 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.152 ? metalc ? metalc7 I FE FE . C FE 179 1_555 R N11 ZYG . C ZYG 188 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.494 ? metalc ? metalc8 I FE FE . C FE 179 1_555 R N35 ZYG . C ZYG 188 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.532 ? metalc ? metalc9 I FE FE . C FE 179 1_555 R O36 ZYG . C ZYG 188 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.665 ? metalc ? metalc10 L NA NA . C NA 182 1_555 V O HOH . C HOH 269 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.787 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 3PEC _atom_sites.fract_transf_matrix[1][1] 0.008757 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008757 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008382 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 GOL A 1 179 7 GOL GOL . E 2 GOL A 1 180 1 GOL GOL . F 2 GOL A 1 181 3 GOL GOL . G 2 GOL A 1 182 4 GOL GOL . H 3 SO4 A 1 183 3 SO4 SO4 . I 4 FE C 1 179 4 FE FE . J 2 GOL C 1 180 8 GOL GOL . K 2 GOL C 1 181 5 GOL GOL . L 5 NA C 1 182 1 NA NA . M 5 NA C 1 183 2 NA NA . N 5 NA C 1 184 3 NA NA . O 5 NA C 1 185 4 NA NA . P 3 SO4 C 1 186 1 SO4 SO4 . Q 3 SO4 C 1 187 2 SO4 SO4 . R 6 ZYG C 1 188 1 ZYG ZYG . S 2 GOL C 1 3731 3731 GOL GOL . T 7 HOH A 1 184 1 HOH HOH . T 7 HOH A 2 185 2 HOH HOH . T 7 HOH A 3 186 186 HOH HOH . T 7 HOH A 4 187 3 HOH HOH . T 7 HOH A 5 188 4 HOH HOH . T 7 HOH A 6 189 5 HOH HOH . T 7 HOH A 7 190 6 HOH HOH . T 7 HOH A 8 191 7 HOH HOH . T 7 HOH A 9 192 8 HOH HOH . T 7 HOH A 10 193 9 HOH HOH . T 7 HOH A 11 194 10 HOH HOH . T 7 HOH A 12 195 195 HOH HOH . T 7 HOH A 13 196 11 HOH HOH . T 7 HOH A 14 197 197 HOH HOH . T 7 HOH A 15 198 15 HOH HOH . T 7 HOH A 16 199 16 HOH HOH . T 7 HOH A 17 200 200 HOH HOH . T 7 HOH A 18 201 17 HOH HOH . T 7 HOH A 19 202 202 HOH HOH . T 7 HOH A 20 203 203 HOH HOH . T 7 HOH A 21 204 18 HOH HOH . T 7 HOH A 22 205 31 HOH HOH . T 7 HOH A 23 206 51 HOH HOH . T 7 HOH A 24 207 52 HOH HOH . T 7 HOH A 25 208 208 HOH HOH . T 7 HOH A 26 209 58 HOH HOH . T 7 HOH A 27 210 66 HOH HOH . T 7 HOH A 28 211 67 HOH HOH . T 7 HOH A 29 212 72 HOH HOH . T 7 HOH A 30 213 213 HOH HOH . T 7 HOH A 31 214 75 HOH HOH . T 7 HOH A 32 215 78 HOH HOH . T 7 HOH A 33 216 82 HOH HOH . T 7 HOH A 34 217 217 HOH HOH . T 7 HOH A 35 218 96 HOH HOH . T 7 HOH A 36 219 113 HOH HOH . T 7 HOH A 37 220 114 HOH HOH . T 7 HOH A 38 221 116 HOH HOH . T 7 HOH A 39 222 222 HOH HOH . T 7 HOH A 40 223 118 HOH HOH . T 7 HOH A 41 224 224 HOH HOH . T 7 HOH A 42 225 123 HOH HOH . T 7 HOH A 43 226 124 HOH HOH . T 7 HOH A 44 227 126 HOH HOH . T 7 HOH A 45 228 140 HOH HOH . T 7 HOH A 46 229 143 HOH HOH . T 7 HOH A 47 230 149 HOH HOH . T 7 HOH A 48 231 150 HOH HOH . T 7 HOH A 49 232 166 HOH HOH . T 7 HOH A 50 233 178 HOH HOH . T 7 HOH A 51 234 180 HOH HOH . T 7 HOH A 52 235 235 HOH HOH . T 7 HOH A 53 236 48 HOH HOH . T 7 HOH A 54 240 240 HOH HOH . T 7 HOH A 55 243 243 HOH HOH . T 7 HOH A 56 255 255 HOH HOH . T 7 HOH A 57 256 256 HOH HOH . T 7 HOH A 58 262 262 HOH HOH . T 7 HOH A 59 284 284 HOH HOH . T 7 HOH A 60 285 285 HOH HOH . T 7 HOH A 61 289 289 HOH HOH . T 7 HOH A 62 292 292 HOH HOH . T 7 HOH A 63 293 293 HOH HOH . T 7 HOH A 64 300 300 HOH HOH . T 7 HOH A 65 301 301 HOH HOH . T 7 HOH A 66 302 302 HOH HOH . T 7 HOH A 67 309 309 HOH HOH . T 7 HOH A 68 314 314 HOH HOH . T 7 HOH A 69 325 325 HOH HOH . T 7 HOH A 70 336 336 HOH HOH . T 7 HOH A 71 337 337 HOH HOH . T 7 HOH A 72 338 338 HOH HOH . T 7 HOH A 73 339 339 HOH HOH . T 7 HOH A 74 340 340 HOH HOH . T 7 HOH A 75 345 345 HOH HOH . T 7 HOH A 76 349 349 HOH HOH . T 7 HOH A 77 360 360 HOH HOH . T 7 HOH A 78 361 361 HOH HOH . T 7 HOH A 79 364 364 HOH HOH . T 7 HOH A 80 365 365 HOH HOH . T 7 HOH A 81 369 369 HOH HOH . T 7 HOH A 82 370 370 HOH HOH . T 7 HOH A 83 371 371 HOH HOH . T 7 HOH A 84 375 375 HOH HOH . T 7 HOH A 85 376 376 HOH HOH . T 7 HOH A 86 377 377 HOH HOH . T 7 HOH A 87 378 378 HOH HOH . U 7 HOH B 1 179 179 HOH HOH . U 7 HOH B 2 180 19 HOH HOH . U 7 HOH B 3 181 20 HOH HOH . U 7 HOH B 4 182 21 HOH HOH . U 7 HOH B 5 183 24 HOH HOH . U 7 HOH B 6 184 25 HOH HOH . U 7 HOH B 7 185 55 HOH HOH . U 7 HOH B 8 186 70 HOH HOH . U 7 HOH B 9 187 95 HOH HOH . U 7 HOH B 10 188 108 HOH HOH . U 7 HOH B 11 189 127 HOH HOH . U 7 HOH B 12 190 134 HOH HOH . U 7 HOH B 13 191 139 HOH HOH . U 7 HOH B 14 210 210 HOH HOH . U 7 HOH B 15 223 223 HOH HOH . U 7 HOH B 16 308 308 HOH HOH . U 7 HOH B 17 318 318 HOH HOH . U 7 HOH B 18 342 342 HOH HOH . U 7 HOH B 19 343 343 HOH HOH . U 7 HOH B 20 368 368 HOH HOH . V 7 HOH C 1 189 26 HOH HOH . V 7 HOH C 2 190 27 HOH HOH . V 7 HOH C 3 191 28 HOH HOH . V 7 HOH C 4 192 29 HOH HOH . V 7 HOH C 5 193 193 HOH HOH . V 7 HOH C 6 194 30 HOH HOH . V 7 HOH C 7 195 32 HOH HOH . V 7 HOH C 8 196 33 HOH HOH . V 7 HOH C 9 197 34 HOH HOH . V 7 HOH C 10 198 198 HOH HOH . V 7 HOH C 11 199 199 HOH HOH . V 7 HOH C 12 200 35 HOH HOH . V 7 HOH C 13 201 36 HOH HOH . V 7 HOH C 14 202 37 HOH HOH . V 7 HOH C 15 203 38 HOH HOH . V 7 HOH C 16 204 42 HOH HOH . V 7 HOH C 17 205 43 HOH HOH . V 7 HOH C 18 206 206 HOH HOH . V 7 HOH C 19 207 44 HOH HOH . V 7 HOH C 20 208 47 HOH HOH . V 7 HOH C 21 210 50 HOH HOH . V 7 HOH C 22 211 53 HOH HOH . V 7 HOH C 23 212 57 HOH HOH . V 7 HOH C 24 213 60 HOH HOH . V 7 HOH C 25 214 68 HOH HOH . V 7 HOH C 26 215 77 HOH HOH . V 7 HOH C 27 216 79 HOH HOH . V 7 HOH C 28 217 83 HOH HOH . V 7 HOH C 29 218 218 HOH HOH . V 7 HOH C 30 219 85 HOH HOH . V 7 HOH C 31 220 86 HOH HOH . V 7 HOH C 32 221 88 HOH HOH . V 7 HOH C 33 222 89 HOH HOH . V 7 HOH C 34 223 90 HOH HOH . V 7 HOH C 35 224 91 HOH HOH . V 7 HOH C 36 225 92 HOH HOH . V 7 HOH C 37 226 94 HOH HOH . V 7 HOH C 38 227 97 HOH HOH . V 7 HOH C 39 228 98 HOH HOH . V 7 HOH C 40 229 99 HOH HOH . V 7 HOH C 41 230 100 HOH HOH . V 7 HOH C 42 231 102 HOH HOH . V 7 HOH C 43 232 103 HOH HOH . V 7 HOH C 44 233 233 HOH HOH . V 7 HOH C 45 234 104 HOH HOH . V 7 HOH C 46 235 107 HOH HOH . V 7 HOH C 47 236 109 HOH HOH . V 7 HOH C 48 237 111 HOH HOH . V 7 HOH C 49 238 238 HOH HOH . V 7 HOH C 50 239 239 HOH HOH . V 7 HOH C 51 240 112 HOH HOH . V 7 HOH C 52 241 241 HOH HOH . V 7 HOH C 53 242 115 HOH HOH . V 7 HOH C 54 243 117 HOH HOH . V 7 HOH C 55 244 244 HOH HOH . V 7 HOH C 56 245 119 HOH HOH . V 7 HOH C 57 246 121 HOH HOH . V 7 HOH C 58 247 125 HOH HOH . V 7 HOH C 59 248 248 HOH HOH . V 7 HOH C 60 249 128 HOH HOH . V 7 HOH C 61 250 130 HOH HOH . V 7 HOH C 62 251 132 HOH HOH . V 7 HOH C 63 252 135 HOH HOH . V 7 HOH C 64 253 137 HOH HOH . V 7 HOH C 65 254 138 HOH HOH . V 7 HOH C 66 255 144 HOH HOH . V 7 HOH C 67 256 145 HOH HOH . V 7 HOH C 68 257 146 HOH HOH . V 7 HOH C 69 258 157 HOH HOH . V 7 HOH C 70 259 158 HOH HOH . V 7 HOH C 71 260 161 HOH HOH . V 7 HOH C 72 261 261 HOH HOH . V 7 HOH C 73 262 163 HOH HOH . V 7 HOH C 74 263 263 HOH HOH . V 7 HOH C 75 264 264 HOH HOH . V 7 HOH C 76 265 164 HOH HOH . V 7 HOH C 77 266 266 HOH HOH . V 7 HOH C 78 267 167 HOH HOH . V 7 HOH C 79 268 268 HOH HOH . V 7 HOH C 80 269 169 HOH HOH . V 7 HOH C 81 270 173 HOH HOH . V 7 HOH C 82 271 271 HOH HOH . V 7 HOH C 83 272 272 HOH HOH . V 7 HOH C 84 273 273 HOH HOH . V 7 HOH C 85 274 174 HOH HOH . V 7 HOH C 86 275 275 HOH HOH . V 7 HOH C 87 276 276 HOH HOH . V 7 HOH C 88 277 277 HOH HOH . V 7 HOH C 89 278 278 HOH HOH . V 7 HOH C 90 279 279 HOH HOH . V 7 HOH C 91 280 280 HOH HOH . V 7 HOH C 92 281 175 HOH HOH . V 7 HOH C 93 282 183 HOH HOH . V 7 HOH C 94 287 287 HOH HOH . V 7 HOH C 95 288 288 HOH HOH . V 7 HOH C 96 296 296 HOH HOH . V 7 HOH C 97 305 305 HOH HOH . V 7 HOH C 98 306 306 HOH HOH . V 7 HOH C 99 312 312 HOH HOH . V 7 HOH C 100 313 313 HOH HOH . V 7 HOH C 101 316 316 HOH HOH . V 7 HOH C 102 321 321 HOH HOH . V 7 HOH C 103 324 324 HOH HOH . V 7 HOH C 104 326 326 HOH HOH . V 7 HOH C 105 327 327 HOH HOH . V 7 HOH C 106 330 330 HOH HOH . V 7 HOH C 107 331 331 HOH HOH . V 7 HOH C 108 333 333 HOH HOH . V 7 HOH C 109 334 334 HOH HOH . V 7 HOH C 110 335 335 HOH HOH . V 7 HOH C 111 348 348 HOH HOH . V 7 HOH C 112 350 350 HOH HOH . V 7 HOH C 113 351 351 HOH HOH . V 7 HOH C 114 354 354 HOH HOH . V 7 HOH C 115 355 355 HOH HOH . V 7 HOH C 116 358 358 HOH HOH . V 7 HOH C 117 359 359 HOH HOH . V 7 HOH C 118 372 372 HOH HOH . V 7 HOH C 119 373 373 HOH HOH . V 7 HOH C 120 374 374 HOH HOH . V 7 HOH C 121 379 379 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . K 2 49.641 40.018 57.577 1 46.24 ? C1 GOL 181 C 1 HETATM 2 O O1 GOL . . . K 2 50.374 40.513 56.478 1 46.03 ? O1 GOL 181 C 1 HETATM 3 C C2 GOL . . . K 2 48.565 39.047 57.101 1 46.09 ? C2 GOL 181 C 1 HETATM 4 O O2 GOL . . . K 2 47.618 38.855 58.126 1 45.93 ? O2 GOL 181 C 1 HETATM 5 C C3 GOL . . . K 2 47.88 39.606 55.86 1 45.97 ? C3 GOL 181 C 1 HETATM 6 O O3 GOL . . . K 2 46.676 38.94 55.568 1 45.89 ? O3 GOL 181 C 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 355 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 6 #