data_3PEC
#
_model_server_result.job_id            rY-klRjlBQOnh29Ztp0ptA 
_model_server_result.datetime_utc      '2024-11-25 02:28:54' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3pec 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"M","auth_seq_id":183}' 
#
_entry.id    3PEC 
#
_exptl.entry_id    3PEC 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              22.99 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'SODIUM ION' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3PEC 
_cell.length_a            114.2 
_cell.length_b            114.2 
_cell.length_c            119.3 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3PEC 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        92 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 41 21 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
? monomeric 1 author_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,D,E,F,G,H,T 1 1 
B,U 2 1 
C,I,J,K,L,M,N,O,P,Q,R,S,V 3 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 L N N 
? 5 M N N 
? 5 N N N 
? 5 O N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 76 A CYS 76 1_555 A SG CYS 175 A CYS 175 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf2 B SG CYS 76 B CYS 76 1_555 B SG CYS 175 B CYS 175 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf3 C SG CYS 76 C CYS 76 1_555 C SG CYS 175 C CYS 175 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
metalc ? metalc1 T O HOH . A HOH 225 1_555 M NA NA . C NA 183 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.042 ? 
metalc ? metalc2 C OD1 ASN 21 C ASN 21 1_555 M NA NA . C NA 183 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.139 ? 
metalc ? metalc3 C O PHE 22 C PHE 22 1_555 M NA NA . C NA 183 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.915 ? 
metalc ? metalc4 C OG SER 112 C SER 112 1_555 N NA NA . C NA 184 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.067 ? 
metalc ? metalc5 I FE FE . C FE 179 1_555 R O44 ZYG . C ZYG 188 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.86 ? 
metalc ? metalc6 I FE FE . C FE 179 1_555 R O2 ZYG . C ZYG 188 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.152 ? 
metalc ? metalc7 I FE FE . C FE 179 1_555 R N11 ZYG . C ZYG 188 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.494 ? 
metalc ? metalc8 I FE FE . C FE 179 1_555 R N35 ZYG . C ZYG 188 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.532 ? 
metalc ? metalc9 I FE FE . C FE 179 1_555 R O36 ZYG . C ZYG 188 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.665 ? 
metalc ? metalc10 L NA NA . C NA 182 1_555 V O HOH . C HOH 269 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.787 ? 
#
_chem_comp.formula           'Na 1' 
_chem_comp.formula_weight    22.99 
_chem_comp.id                NA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'SODIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     3PEC 
_atom_sites.fract_transf_matrix[1][1]    0.008757 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008757 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008382 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 2 GOL A 1 179 7 GOL GOL . 
E 2 GOL A 1 180 1 GOL GOL . 
F 2 GOL A 1 181 3 GOL GOL . 
G 2 GOL A 1 182 4 GOL GOL . 
H 3 SO4 A 1 183 3 SO4 SO4 . 
I 4 FE C 1 179 4 FE FE . 
J 2 GOL C 1 180 8 GOL GOL . 
K 2 GOL C 1 181 5 GOL GOL . 
L 5 NA C 1 182 1 NA NA . 
M 5 NA C 1 183 2 NA NA . 
N 5 NA C 1 184 3 NA NA . 
O 5 NA C 1 185 4 NA NA . 
P 3 SO4 C 1 186 1 SO4 SO4 . 
Q 3 SO4 C 1 187 2 SO4 SO4 . 
R 6 ZYG C 1 188 1 ZYG ZYG . 
S 2 GOL C 1 3731 3731 GOL GOL . 
T 7 HOH A 1 184 1 HOH HOH . 
T 7 HOH A 2 185 2 HOH HOH . 
T 7 HOH A 3 186 186 HOH HOH . 
T 7 HOH A 4 187 3 HOH HOH . 
T 7 HOH A 5 188 4 HOH HOH . 
T 7 HOH A 6 189 5 HOH HOH . 
T 7 HOH A 7 190 6 HOH HOH . 
T 7 HOH A 8 191 7 HOH HOH . 
T 7 HOH A 9 192 8 HOH HOH . 
T 7 HOH A 10 193 9 HOH HOH . 
T 7 HOH A 11 194 10 HOH HOH . 
T 7 HOH A 12 195 195 HOH HOH . 
T 7 HOH A 13 196 11 HOH HOH . 
T 7 HOH A 14 197 197 HOH HOH . 
T 7 HOH A 15 198 15 HOH HOH . 
T 7 HOH A 16 199 16 HOH HOH . 
T 7 HOH A 17 200 200 HOH HOH . 
T 7 HOH A 18 201 17 HOH HOH . 
T 7 HOH A 19 202 202 HOH HOH . 
T 7 HOH A 20 203 203 HOH HOH . 
T 7 HOH A 21 204 18 HOH HOH . 
T 7 HOH A 22 205 31 HOH HOH . 
T 7 HOH A 23 206 51 HOH HOH . 
T 7 HOH A 24 207 52 HOH HOH . 
T 7 HOH A 25 208 208 HOH HOH . 
T 7 HOH A 26 209 58 HOH HOH . 
T 7 HOH A 27 210 66 HOH HOH . 
T 7 HOH A 28 211 67 HOH HOH . 
T 7 HOH A 29 212 72 HOH HOH . 
T 7 HOH A 30 213 213 HOH HOH . 
T 7 HOH A 31 214 75 HOH HOH . 
T 7 HOH A 32 215 78 HOH HOH . 
T 7 HOH A 33 216 82 HOH HOH . 
T 7 HOH A 34 217 217 HOH HOH . 
T 7 HOH A 35 218 96 HOH HOH . 
T 7 HOH A 36 219 113 HOH HOH . 
T 7 HOH A 37 220 114 HOH HOH . 
T 7 HOH A 38 221 116 HOH HOH . 
T 7 HOH A 39 222 222 HOH HOH . 
T 7 HOH A 40 223 118 HOH HOH . 
T 7 HOH A 41 224 224 HOH HOH . 
T 7 HOH A 42 225 123 HOH HOH . 
T 7 HOH A 43 226 124 HOH HOH . 
T 7 HOH A 44 227 126 HOH HOH . 
T 7 HOH A 45 228 140 HOH HOH . 
T 7 HOH A 46 229 143 HOH HOH . 
T 7 HOH A 47 230 149 HOH HOH . 
T 7 HOH A 48 231 150 HOH HOH . 
T 7 HOH A 49 232 166 HOH HOH . 
T 7 HOH A 50 233 178 HOH HOH . 
T 7 HOH A 51 234 180 HOH HOH . 
T 7 HOH A 52 235 235 HOH HOH . 
T 7 HOH A 53 236 48 HOH HOH . 
T 7 HOH A 54 240 240 HOH HOH . 
T 7 HOH A 55 243 243 HOH HOH . 
T 7 HOH A 56 255 255 HOH HOH . 
T 7 HOH A 57 256 256 HOH HOH . 
T 7 HOH A 58 262 262 HOH HOH . 
T 7 HOH A 59 284 284 HOH HOH . 
T 7 HOH A 60 285 285 HOH HOH . 
T 7 HOH A 61 289 289 HOH HOH . 
T 7 HOH A 62 292 292 HOH HOH . 
T 7 HOH A 63 293 293 HOH HOH . 
T 7 HOH A 64 300 300 HOH HOH . 
T 7 HOH A 65 301 301 HOH HOH . 
T 7 HOH A 66 302 302 HOH HOH . 
T 7 HOH A 67 309 309 HOH HOH . 
T 7 HOH A 68 314 314 HOH HOH . 
T 7 HOH A 69 325 325 HOH HOH . 
T 7 HOH A 70 336 336 HOH HOH . 
T 7 HOH A 71 337 337 HOH HOH . 
T 7 HOH A 72 338 338 HOH HOH . 
T 7 HOH A 73 339 339 HOH HOH . 
T 7 HOH A 74 340 340 HOH HOH . 
T 7 HOH A 75 345 345 HOH HOH . 
T 7 HOH A 76 349 349 HOH HOH . 
T 7 HOH A 77 360 360 HOH HOH . 
T 7 HOH A 78 361 361 HOH HOH . 
T 7 HOH A 79 364 364 HOH HOH . 
T 7 HOH A 80 365 365 HOH HOH . 
T 7 HOH A 81 369 369 HOH HOH . 
T 7 HOH A 82 370 370 HOH HOH . 
T 7 HOH A 83 371 371 HOH HOH . 
T 7 HOH A 84 375 375 HOH HOH . 
T 7 HOH A 85 376 376 HOH HOH . 
T 7 HOH A 86 377 377 HOH HOH . 
T 7 HOH A 87 378 378 HOH HOH . 
U 7 HOH B 1 179 179 HOH HOH . 
U 7 HOH B 2 180 19 HOH HOH . 
U 7 HOH B 3 181 20 HOH HOH . 
U 7 HOH B 4 182 21 HOH HOH . 
U 7 HOH B 5 183 24 HOH HOH . 
U 7 HOH B 6 184 25 HOH HOH . 
U 7 HOH B 7 185 55 HOH HOH . 
U 7 HOH B 8 186 70 HOH HOH . 
U 7 HOH B 9 187 95 HOH HOH . 
U 7 HOH B 10 188 108 HOH HOH . 
U 7 HOH B 11 189 127 HOH HOH . 
U 7 HOH B 12 190 134 HOH HOH . 
U 7 HOH B 13 191 139 HOH HOH . 
U 7 HOH B 14 210 210 HOH HOH . 
U 7 HOH B 15 223 223 HOH HOH . 
U 7 HOH B 16 308 308 HOH HOH . 
U 7 HOH B 17 318 318 HOH HOH . 
U 7 HOH B 18 342 342 HOH HOH . 
U 7 HOH B 19 343 343 HOH HOH . 
U 7 HOH B 20 368 368 HOH HOH . 
V 7 HOH C 1 189 26 HOH HOH . 
V 7 HOH C 2 190 27 HOH HOH . 
V 7 HOH C 3 191 28 HOH HOH . 
V 7 HOH C 4 192 29 HOH HOH . 
V 7 HOH C 5 193 193 HOH HOH . 
V 7 HOH C 6 194 30 HOH HOH . 
V 7 HOH C 7 195 32 HOH HOH . 
V 7 HOH C 8 196 33 HOH HOH . 
V 7 HOH C 9 197 34 HOH HOH . 
V 7 HOH C 10 198 198 HOH HOH . 
V 7 HOH C 11 199 199 HOH HOH . 
V 7 HOH C 12 200 35 HOH HOH . 
V 7 HOH C 13 201 36 HOH HOH . 
V 7 HOH C 14 202 37 HOH HOH . 
V 7 HOH C 15 203 38 HOH HOH . 
V 7 HOH C 16 204 42 HOH HOH . 
V 7 HOH C 17 205 43 HOH HOH . 
V 7 HOH C 18 206 206 HOH HOH . 
V 7 HOH C 19 207 44 HOH HOH . 
V 7 HOH C 20 208 47 HOH HOH . 
V 7 HOH C 21 210 50 HOH HOH . 
V 7 HOH C 22 211 53 HOH HOH . 
V 7 HOH C 23 212 57 HOH HOH . 
V 7 HOH C 24 213 60 HOH HOH . 
V 7 HOH C 25 214 68 HOH HOH . 
V 7 HOH C 26 215 77 HOH HOH . 
V 7 HOH C 27 216 79 HOH HOH . 
V 7 HOH C 28 217 83 HOH HOH . 
V 7 HOH C 29 218 218 HOH HOH . 
V 7 HOH C 30 219 85 HOH HOH . 
V 7 HOH C 31 220 86 HOH HOH . 
V 7 HOH C 32 221 88 HOH HOH . 
V 7 HOH C 33 222 89 HOH HOH . 
V 7 HOH C 34 223 90 HOH HOH . 
V 7 HOH C 35 224 91 HOH HOH . 
V 7 HOH C 36 225 92 HOH HOH . 
V 7 HOH C 37 226 94 HOH HOH . 
V 7 HOH C 38 227 97 HOH HOH . 
V 7 HOH C 39 228 98 HOH HOH . 
V 7 HOH C 40 229 99 HOH HOH . 
V 7 HOH C 41 230 100 HOH HOH . 
V 7 HOH C 42 231 102 HOH HOH . 
V 7 HOH C 43 232 103 HOH HOH . 
V 7 HOH C 44 233 233 HOH HOH . 
V 7 HOH C 45 234 104 HOH HOH . 
V 7 HOH C 46 235 107 HOH HOH . 
V 7 HOH C 47 236 109 HOH HOH . 
V 7 HOH C 48 237 111 HOH HOH . 
V 7 HOH C 49 238 238 HOH HOH . 
V 7 HOH C 50 239 239 HOH HOH . 
V 7 HOH C 51 240 112 HOH HOH . 
V 7 HOH C 52 241 241 HOH HOH . 
V 7 HOH C 53 242 115 HOH HOH . 
V 7 HOH C 54 243 117 HOH HOH . 
V 7 HOH C 55 244 244 HOH HOH . 
V 7 HOH C 56 245 119 HOH HOH . 
V 7 HOH C 57 246 121 HOH HOH . 
V 7 HOH C 58 247 125 HOH HOH . 
V 7 HOH C 59 248 248 HOH HOH . 
V 7 HOH C 60 249 128 HOH HOH . 
V 7 HOH C 61 250 130 HOH HOH . 
V 7 HOH C 62 251 132 HOH HOH . 
V 7 HOH C 63 252 135 HOH HOH . 
V 7 HOH C 64 253 137 HOH HOH . 
V 7 HOH C 65 254 138 HOH HOH . 
V 7 HOH C 66 255 144 HOH HOH . 
V 7 HOH C 67 256 145 HOH HOH . 
V 7 HOH C 68 257 146 HOH HOH . 
V 7 HOH C 69 258 157 HOH HOH . 
V 7 HOH C 70 259 158 HOH HOH . 
V 7 HOH C 71 260 161 HOH HOH . 
V 7 HOH C 72 261 261 HOH HOH . 
V 7 HOH C 73 262 163 HOH HOH . 
V 7 HOH C 74 263 263 HOH HOH . 
V 7 HOH C 75 264 264 HOH HOH . 
V 7 HOH C 76 265 164 HOH HOH . 
V 7 HOH C 77 266 266 HOH HOH . 
V 7 HOH C 78 267 167 HOH HOH . 
V 7 HOH C 79 268 268 HOH HOH . 
V 7 HOH C 80 269 169 HOH HOH . 
V 7 HOH C 81 270 173 HOH HOH . 
V 7 HOH C 82 271 271 HOH HOH . 
V 7 HOH C 83 272 272 HOH HOH . 
V 7 HOH C 84 273 273 HOH HOH . 
V 7 HOH C 85 274 174 HOH HOH . 
V 7 HOH C 86 275 275 HOH HOH . 
V 7 HOH C 87 276 276 HOH HOH . 
V 7 HOH C 88 277 277 HOH HOH . 
V 7 HOH C 89 278 278 HOH HOH . 
V 7 HOH C 90 279 279 HOH HOH . 
V 7 HOH C 91 280 280 HOH HOH . 
V 7 HOH C 92 281 175 HOH HOH . 
V 7 HOH C 93 282 183 HOH HOH . 
V 7 HOH C 94 287 287 HOH HOH . 
V 7 HOH C 95 288 288 HOH HOH . 
V 7 HOH C 96 296 296 HOH HOH . 
V 7 HOH C 97 305 305 HOH HOH . 
V 7 HOH C 98 306 306 HOH HOH . 
V 7 HOH C 99 312 312 HOH HOH . 
V 7 HOH C 100 313 313 HOH HOH . 
V 7 HOH C 101 316 316 HOH HOH . 
V 7 HOH C 102 321 321 HOH HOH . 
V 7 HOH C 103 324 324 HOH HOH . 
V 7 HOH C 104 326 326 HOH HOH . 
V 7 HOH C 105 327 327 HOH HOH . 
V 7 HOH C 106 330 330 HOH HOH . 
V 7 HOH C 107 331 331 HOH HOH . 
V 7 HOH C 108 333 333 HOH HOH . 
V 7 HOH C 109 334 334 HOH HOH . 
V 7 HOH C 110 335 335 HOH HOH . 
V 7 HOH C 111 348 348 HOH HOH . 
V 7 HOH C 112 350 350 HOH HOH . 
V 7 HOH C 113 351 351 HOH HOH . 
V 7 HOH C 114 354 354 HOH HOH . 
V 7 HOH C 115 355 355 HOH HOH . 
V 7 HOH C 116 358 358 HOH HOH . 
V 7 HOH C 117 359 359 HOH HOH . 
V 7 HOH C 118 372 372 HOH HOH . 
V 7 HOH C 119 373 373 HOH HOH . 
V 7 HOH C 120 374 374 HOH HOH . 
V 7 HOH C 121 379 379 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           NA 
_atom_site.label_atom_id         NA 
_atom_site.label_comp_id         NA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         M 
_atom_site.label_entity_id       5 
_atom_site.Cartn_x               38.286 
_atom_site.Cartn_y               57.144 
_atom_site.Cartn_z               56.689 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        42.57 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          NA 
_atom_site.auth_comp_id          NA 
_atom_site.auth_seq_id           183 
_atom_site.auth_asym_id          C 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              15 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           311 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           1 
#