data_3PED # _model_server_result.job_id 0Sx-ltGziPXd3SVMch_c8Q _model_server_result.datetime_utc '2024-10-18 04:30:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3ped # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":180}' # _entry.id 3PED # _exptl.entry_id 3PED _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 96.063 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SULFATE ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3PED _cell.length_a 114.2 _cell.length_b 114.2 _cell.length_c 119.3 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3PED _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 ? monomeric 1 author_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,E,K 1 1 B,F,G,L 2 1 C,H,I,J,M 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id J _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 76 A CYS 76 1_555 A SG CYS 175 A CYS 175 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf2 B SG CYS 76 B CYS 76 1_555 B SG CYS 175 B CYS 175 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf3 C SG CYS 76 C CYS 76 1_555 C SG CYS 175 C CYS 175 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? metalc ? metalc1 D FE FE . A FE 179 1_555 E O2 ZYF . A ZYF 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.985 ? metalc ? metalc2 D FE FE . A FE 179 1_555 E N11 ZYF . A ZYF 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.24 ? metalc ? metalc3 D FE FE . A FE 179 1_555 E O38 ZYF . A ZYF 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.242 ? metalc ? metalc4 D FE FE . A FE 179 1_555 E O36 ZYF . A ZYF 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.272 ? metalc ? metalc5 D FE FE . A FE 179 1_555 E O44 ZYF . A ZYF 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.282 ? metalc ? metalc6 D FE FE . A FE 179 1_555 E O46 ZYF . A ZYF 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.284 ? metalc ? metalc7 F FE FE . B FE 179 1_555 G O36 ZYF . B ZYF 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? metalc ? metalc8 F FE FE . B FE 179 1_555 G O44 ZYF . B ZYF 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.164 ? metalc ? metalc9 F FE FE . B FE 179 1_555 G O2 ZYF . B ZYF 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.176 ? metalc ? metalc10 F FE FE . B FE 179 1_555 G O46 ZYF . B ZYF 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.312 ? metalc ? metalc11 F FE FE . B FE 179 1_555 G N11 ZYF . B ZYF 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.338 ? metalc ? metalc12 F FE FE . B FE 179 1_555 G O38 ZYF . B ZYF 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.43 ? metalc ? metalc13 H FE FE . C FE 179 1_555 I O36 ZYF . C ZYF 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.984 ? metalc ? metalc14 H FE FE . C FE 179 1_555 I O2 ZYF . C ZYF 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? metalc ? metalc15 H FE FE . C FE 179 1_555 I O38 ZYF . C ZYF 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.112 ? metalc ? metalc16 H FE FE . C FE 179 1_555 I O46 ZYF . C ZYF 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.141 ? metalc ? metalc17 H FE FE . C FE 179 1_555 I N11 ZYF . C ZYF 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.146 ? metalc ? metalc18 H FE FE . C FE 179 1_555 I O44 ZYF . C ZYF 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.149 ? metalc ? metalc19 H FE FE . C FE 179 1_555 I N35 ZYF . C ZYF 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.795 ? # _chem_comp.formula 'O4 S -2' _chem_comp.formula_weight 96.063 _chem_comp.id SO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'SULFATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O1 SO4 doub 290 n n S O2 SO4 doub 291 n n S O3 SO4 sing 292 n n S O4 SO4 sing 293 n n # _atom_sites.entry_id 3PED _atom_sites.fract_transf_matrix[1][1] 0.008757 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008757 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008382 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 FE A 1 179 1 FE FE . E 3 ZYF A 1 200 200 ZYF ZYF . F 2 FE B 1 179 2 FE FE . G 3 ZYF B 1 200 200 ZYF ZYF . H 2 FE C 1 179 3 FE FE . I 3 ZYF C 1 200 200 ZYF ZYF . J 4 SO4 C 1 180 1 SO4 SO4 . K 5 HOH A 1 180 2 HOH HOH . K 5 HOH A 2 181 8 HOH HOH . K 5 HOH A 3 182 10 HOH HOH . K 5 HOH A 4 183 11 HOH HOH . K 5 HOH A 5 184 14 HOH HOH . K 5 HOH A 6 185 15 HOH HOH . K 5 HOH A 7 186 16 HOH HOH . K 5 HOH A 8 187 17 HOH HOH . K 5 HOH A 9 188 18 HOH HOH . K 5 HOH A 10 189 19 HOH HOH . K 5 HOH A 11 190 20 HOH HOH . K 5 HOH A 12 191 21 HOH HOH . K 5 HOH A 13 192 22 HOH HOH . K 5 HOH A 14 193 23 HOH HOH . K 5 HOH A 15 194 24 HOH HOH . K 5 HOH A 16 195 25 HOH HOH . K 5 HOH A 17 196 26 HOH HOH . K 5 HOH A 18 197 27 HOH HOH . K 5 HOH A 19 198 28 HOH HOH . K 5 HOH A 20 199 29 HOH HOH . K 5 HOH A 21 201 30 HOH HOH . K 5 HOH A 22 202 31 HOH HOH . K 5 HOH A 23 203 32 HOH HOH . K 5 HOH A 24 204 33 HOH HOH . K 5 HOH A 25 205 34 HOH HOH . K 5 HOH A 26 206 35 HOH HOH . K 5 HOH A 27 207 36 HOH HOH . K 5 HOH A 28 208 37 HOH HOH . K 5 HOH A 29 209 38 HOH HOH . K 5 HOH A 30 210 39 HOH HOH . K 5 HOH A 31 211 70 HOH HOH . K 5 HOH A 32 212 71 HOH HOH . K 5 HOH A 33 213 72 HOH HOH . K 5 HOH A 34 214 73 HOH HOH . K 5 HOH A 35 215 74 HOH HOH . K 5 HOH A 36 216 75 HOH HOH . K 5 HOH A 37 217 76 HOH HOH . K 5 HOH A 38 218 99 HOH HOH . K 5 HOH A 39 219 100 HOH HOH . K 5 HOH A 40 220 101 HOH HOH . K 5 HOH A 41 221 102 HOH HOH . K 5 HOH A 42 222 109 HOH HOH . K 5 HOH A 43 223 116 HOH HOH . K 5 HOH A 44 224 121 HOH HOH . K 5 HOH A 45 225 122 HOH HOH . K 5 HOH A 46 226 124 HOH HOH . K 5 HOH A 47 227 137 HOH HOH . K 5 HOH A 48 228 138 HOH HOH . K 5 HOH A 49 229 139 HOH HOH . K 5 HOH A 50 230 144 HOH HOH . K 5 HOH A 51 231 145 HOH HOH . K 5 HOH A 52 232 146 HOH HOH . K 5 HOH A 53 233 159 HOH HOH . L 5 HOH B 1 180 9 HOH HOH . L 5 HOH B 2 181 40 HOH HOH . L 5 HOH B 3 182 41 HOH HOH . L 5 HOH B 4 183 42 HOH HOH . L 5 HOH B 5 184 43 HOH HOH . L 5 HOH B 6 185 44 HOH HOH . L 5 HOH B 7 186 45 HOH HOH . L 5 HOH B 8 187 77 HOH HOH . L 5 HOH B 9 188 103 HOH HOH . L 5 HOH B 10 189 104 HOH HOH . L 5 HOH B 11 190 105 HOH HOH . L 5 HOH B 12 191 106 HOH HOH . L 5 HOH B 13 192 117 HOH HOH . L 5 HOH B 14 193 125 HOH HOH . L 5 HOH B 15 194 126 HOH HOH . L 5 HOH B 16 195 127 HOH HOH . L 5 HOH B 17 196 135 HOH HOH . L 5 HOH B 18 197 136 HOH HOH . L 5 HOH B 19 198 147 HOH HOH . L 5 HOH B 20 199 148 HOH HOH . L 5 HOH B 21 201 149 HOH HOH . L 5 HOH B 22 202 150 HOH HOH . L 5 HOH B 23 203 151 HOH HOH . L 5 HOH B 24 204 157 HOH HOH . L 5 HOH B 25 205 158 HOH HOH . M 5 HOH C 1 181 1 HOH HOH . M 5 HOH C 2 182 3 HOH HOH . M 5 HOH C 3 183 4 HOH HOH . M 5 HOH C 4 184 5 HOH HOH . M 5 HOH C 5 185 6 HOH HOH . M 5 HOH C 6 186 7 HOH HOH . M 5 HOH C 7 187 12 HOH HOH . M 5 HOH C 8 188 13 HOH HOH . M 5 HOH C 9 189 46 HOH HOH . M 5 HOH C 10 190 47 HOH HOH . M 5 HOH C 11 191 48 HOH HOH . M 5 HOH C 12 192 49 HOH HOH . M 5 HOH C 13 193 50 HOH HOH . M 5 HOH C 14 194 51 HOH HOH . M 5 HOH C 15 195 52 HOH HOH . M 5 HOH C 16 196 53 HOH HOH . M 5 HOH C 17 197 54 HOH HOH . M 5 HOH C 18 198 55 HOH HOH . M 5 HOH C 19 199 56 HOH HOH . M 5 HOH C 20 201 57 HOH HOH . M 5 HOH C 21 202 58 HOH HOH . M 5 HOH C 22 203 59 HOH HOH . M 5 HOH C 23 204 60 HOH HOH . M 5 HOH C 24 205 61 HOH HOH . M 5 HOH C 25 206 62 HOH HOH . M 5 HOH C 26 207 63 HOH HOH . M 5 HOH C 27 208 64 HOH HOH . M 5 HOH C 28 209 65 HOH HOH . M 5 HOH C 29 210 66 HOH HOH . M 5 HOH C 30 211 67 HOH HOH . M 5 HOH C 31 212 68 HOH HOH . M 5 HOH C 32 213 69 HOH HOH . M 5 HOH C 33 214 78 HOH HOH . M 5 HOH C 34 215 79 HOH HOH . M 5 HOH C 35 216 80 HOH HOH . M 5 HOH C 36 217 81 HOH HOH . M 5 HOH C 37 218 82 HOH HOH . M 5 HOH C 38 219 83 HOH HOH . M 5 HOH C 39 220 84 HOH HOH . M 5 HOH C 40 221 85 HOH HOH . M 5 HOH C 41 222 86 HOH HOH . M 5 HOH C 42 223 87 HOH HOH . M 5 HOH C 43 224 88 HOH HOH . M 5 HOH C 44 225 89 HOH HOH . M 5 HOH C 45 226 90 HOH HOH . M 5 HOH C 46 227 91 HOH HOH . M 5 HOH C 47 228 92 HOH HOH . M 5 HOH C 48 229 93 HOH HOH . M 5 HOH C 49 230 94 HOH HOH . M 5 HOH C 50 231 95 HOH HOH . M 5 HOH C 51 232 96 HOH HOH . M 5 HOH C 52 233 97 HOH HOH . M 5 HOH C 53 234 98 HOH HOH . M 5 HOH C 54 235 107 HOH HOH . M 5 HOH C 55 236 108 HOH HOH . M 5 HOH C 56 237 110 HOH HOH . M 5 HOH C 57 238 111 HOH HOH . M 5 HOH C 58 239 112 HOH HOH . M 5 HOH C 59 240 113 HOH HOH . M 5 HOH C 60 241 114 HOH HOH . M 5 HOH C 61 242 115 HOH HOH . M 5 HOH C 62 243 118 HOH HOH . M 5 HOH C 63 244 119 HOH HOH . M 5 HOH C 64 245 120 HOH HOH . M 5 HOH C 65 246 123 HOH HOH . M 5 HOH C 66 247 128 HOH HOH . M 5 HOH C 67 248 129 HOH HOH . M 5 HOH C 68 249 130 HOH HOH . M 5 HOH C 69 250 131 HOH HOH . M 5 HOH C 70 251 132 HOH HOH . M 5 HOH C 71 252 133 HOH HOH . M 5 HOH C 72 253 134 HOH HOH . M 5 HOH C 73 254 140 HOH HOH . M 5 HOH C 74 255 141 HOH HOH . M 5 HOH C 75 256 142 HOH HOH . M 5 HOH C 76 257 143 HOH HOH . M 5 HOH C 77 258 152 HOH HOH . M 5 HOH C 78 259 153 HOH HOH . M 5 HOH C 79 260 154 HOH HOH . M 5 HOH C 80 261 155 HOH HOH . M 5 HOH C 81 262 156 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S SO4 . . . J 4 41.109 65.412 40.661 1 90.09 ? S SO4 180 C 1 HETATM 2 O O1 SO4 . . . J 4 41.699 65.107 39.359 1 90.31 ? O1 SO4 180 C 1 HETATM 3 O O2 SO4 . . . J 4 39.729 64.939 40.743 1 89.52 ? O2 SO4 180 C 1 HETATM 4 O O3 SO4 . . . J 4 41.916 64.768 41.697 1 90.39 ? O3 SO4 180 C 1 HETATM 5 O O4 SO4 . . . J 4 41.114 66.86 40.846 1 91.27 ? O4 SO4 180 C 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 265 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 5 #