data_3PEG # _model_server_result.job_id 0L-QxojKXeLeRlKwmdZpPg _model_server_result.datetime_utc '2025-07-20 19:01:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3peg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":500}' # _entry.id 3PEG # _exptl.entry_id 3PEG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 720.012 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(1S)-2-{[(2-AMINOETHOXY)(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL STEARATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3PEG _cell.length_a 104.6 _cell.length_b 104.6 _cell.length_c 116.3 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3PEG _symmetry.cell_setting ? _symmetry.Int_Tables_number 181 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 64 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I 1 1 A,B,C,D,E,F,G,H,I 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 12_545 x,x-y-1,-z+2/3 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 52.3 -90.586257 77.533333 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id H _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 150 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 1690 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 150 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 1690 _struct_conn.ptnr2_symmetry 10_665 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.037 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C39 H78 N O8 P' _chem_comp.formula_weight 720.012 _chem_comp.id PEV _chem_comp.mon_nstd_flag . _chem_comp.name '(1S)-2-{[(2-AMINOETHOXY)(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL STEARATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms PHOSPHATIDYLETHANOLAMINE;1-PALMITOYL-2-OLEOYL-SN-GLYCERO-3-PHOSPHOETHANOLAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C48 C47 PEV sing 237 n n C48 H481 PEV sing 238 n n C48 H482 PEV sing 239 n n C48 H483 PEV sing 240 n n C47 C46 PEV sing 241 n n C47 H471 PEV sing 242 n n C47 H472 PEV sing 243 n n C46 C45 PEV sing 244 n n C46 H461 PEV sing 245 n n C46 H462 PEV sing 246 n n C45 C44 PEV sing 247 n n C45 H451 PEV sing 248 n n C45 H452 PEV sing 249 n n C44 C43 PEV sing 250 n n C44 H441 PEV sing 251 n n C44 H442 PEV sing 252 n n C43 C42 PEV sing 253 n n C43 H431 PEV sing 254 n n C43 H432 PEV sing 255 n n C42 C41 PEV sing 256 n n C42 H421 PEV sing 257 n n C42 H422 PEV sing 258 n n C41 C40 PEV sing 259 n n C41 H411 PEV sing 260 n n C41 H412 PEV sing 261 n n C40 C39 PEV sing 262 n n C40 H401 PEV sing 263 n n C40 H402 PEV sing 264 n n C39 C38 PEV sing 265 n n C39 H391 PEV sing 266 n n C39 H392 PEV sing 267 n n C38 C37 PEV sing 268 n n C38 H381 PEV sing 269 n n C38 H382 PEV sing 270 n n C37 C36 PEV sing 271 n n C37 H371 PEV sing 272 n n C37 H372 PEV sing 273 n n C36 C35 PEV sing 274 n n C36 H361 PEV sing 275 n n C36 H362 PEV sing 276 n n C35 C34 PEV sing 277 n n C35 H351 PEV sing 278 n n C35 H352 PEV sing 279 n n C34 C33 PEV sing 280 n n C34 H341 PEV sing 281 n n C34 H342 PEV sing 282 n n C33 C32 PEV sing 283 n n C33 H331 PEV sing 284 n n C33 H332 PEV sing 285 n n C32 C31 PEV sing 286 n n C32 H321 PEV sing 287 n n C32 H322 PEV sing 288 n n C31 O31 PEV doub 289 n n C31 O2 PEV sing 290 n n O2 C2 PEV sing 291 n n C2 C1 PEV sing 292 n n C2 C3 PEV sing 293 n n C2 H2 PEV sing 294 n n C1 O3P PEV sing 295 n n C1 H11 PEV sing 296 n n C1 H12 PEV sing 297 n n O3P P PEV sing 298 n n P O1P PEV doub 299 n n P O2P PEV sing 300 n n P O4P PEV sing 301 n n O2P HO2P PEV sing 302 n n O4P C4 PEV sing 303 n n C4 C5 PEV sing 304 n n C4 H41 PEV sing 305 n n C4 H42 PEV sing 306 n n C5 N6 PEV sing 307 n n C5 H51 PEV sing 308 n n C5 H52 PEV sing 309 n n N6 HN61 PEV sing 310 n n N6 HN62 PEV sing 311 n n C3 O3 PEV sing 312 n n C3 H31 PEV sing 313 n n C3 H32 PEV sing 314 n n O3 C11 PEV sing 315 n n C11 O11 PEV doub 316 n n C11 C12 PEV sing 317 n n C12 C13 PEV sing 318 n n C12 H121 PEV sing 319 n n C12 H122 PEV sing 320 n n C13 C14 PEV sing 321 n n C13 H131 PEV sing 322 n n C13 H132 PEV sing 323 n n C14 C15 PEV sing 324 n n C14 H141 PEV sing 325 n n C14 H142 PEV sing 326 n n C15 C16 PEV sing 327 n n C15 H151 PEV sing 328 n n C15 H152 PEV sing 329 n n C16 C17 PEV sing 330 n n C16 H161 PEV sing 331 n n C16 H162 PEV sing 332 n n C17 C18 PEV sing 333 n n C17 H171 PEV sing 334 n n C17 H172 PEV sing 335 n n C18 C19 PEV sing 336 n n C18 H181 PEV sing 337 n n C18 H182 PEV sing 338 n n C19 C20 PEV sing 339 n n C19 H191 PEV sing 340 n n C19 H192 PEV sing 341 n n C20 C21 PEV sing 342 n n C20 H201 PEV sing 343 n n C20 H202 PEV sing 344 n n C21 C22 PEV sing 345 n n C21 H211 PEV sing 346 n n C21 H212 PEV sing 347 n n C22 C23 PEV sing 348 n n C22 H221 PEV sing 349 n n C22 H222 PEV sing 350 n n C23 C24 PEV sing 351 n n C23 H231 PEV sing 352 n n C23 H232 PEV sing 353 n n C24 C25 PEV sing 354 n n C24 H241 PEV sing 355 n n C24 H242 PEV sing 356 n n C25 C26 PEV sing 357 n n C25 H251 PEV sing 358 n n C25 H252 PEV sing 359 n n C26 H261 PEV sing 360 n n C26 H262 PEV sing 361 n n C26 H263 PEV sing 362 n n # _atom_sites.entry_id 3PEG _atom_sites.fract_transf_matrix[1][1] 0.00956 _atom_sites.fract_transf_matrix[1][2] 0.00552 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011039 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008598 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 1 1 SO4 SO4 . C 2 SO4 A 1 2 2 SO4 SO4 . D 2 SO4 A 1 3 3 SO4 SO4 . E 2 SO4 A 1 4 4 SO4 SO4 . F 2 SO4 A 1 5 5 SO4 SO4 . G 3 MG A 1 54 54 MG MG . H 4 PEV A 1 500 500 PEV PEV . I 5 HOH A 1 6 6 HOH HOH . I 5 HOH A 2 7 7 HOH HOH . I 5 HOH A 3 8 8 HOH HOH . I 5 HOH A 4 9 9 HOH HOH . I 5 HOH A 5 10 10 HOH HOH . I 5 HOH A 6 11 11 HOH HOH . I 5 HOH A 7 12 12 HOH HOH . I 5 HOH A 8 13 13 HOH HOH . I 5 HOH A 9 14 14 HOH HOH . I 5 HOH A 10 15 15 HOH HOH . I 5 HOH A 11 1817 1817 HOH HOH . I 5 HOH A 12 1818 1818 HOH HOH . I 5 HOH A 13 1819 1819 HOH HOH . I 5 HOH A 14 1820 1820 HOH HOH . I 5 HOH A 15 1821 1821 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C48 PEV . . . H 4 84.286 -13.279 24.707 1 66.22 ? C48 PEV 500 A 1 HETATM 2 C C47 PEV . . . H 4 83.22 -14.293 25.046 1 62.15 ? C47 PEV 500 A 1 HETATM 3 C C46 PEV . . . H 4 81.907 -13.613 25.423 1 57.25 ? C46 PEV 500 A 1 HETATM 4 C C45 PEV . . . H 4 81.421 -12.683 24.315 1 51.17 ? C45 PEV 500 A 1 HETATM 5 C C44 PEV . . . H 4 79.916 -12.473 24.42 1 54.42 ? C44 PEV 500 A 1 HETATM 6 C C43 PEV . . . H 4 79.408 -11.491 23.371 1 53.71 ? C43 PEV 500 A 1 HETATM 7 C C42 PEV . . . H 4 79.242 -10.097 23.964 1 54.37 ? C42 PEV 500 A 1 HETATM 8 C C41 PEV . . . H 4 78.194 -10.118 25.073 1 53.6 ? C41 PEV 500 A 1 HETATM 9 C C40 PEV . . . H 4 78.164 -8.807 25.847 1 50.81 ? C40 PEV 500 A 1 HETATM 10 C C39 PEV . . . H 4 77.153 -8.88 26.986 1 56.09 ? C39 PEV 500 A 1 HETATM 11 C C38 PEV . . . H 4 77.536 -9.977 27.973 1 57.76 ? C38 PEV 500 A 1 HETATM 12 C C37 PEV . . . H 4 78.957 -9.763 28.48 1 59.69 ? C37 PEV 500 A 1 HETATM 13 C C36 PEV . . . H 4 79.445 -10.966 29.275 1 61.88 ? C36 PEV 500 A 1 HETATM 14 C C35 PEV . . . H 4 80.933 -10.858 29.593 1 64.02 ? C35 PEV 500 A 1 HETATM 15 C C34 PEV . . . H 4 81.516 -12.237 29.886 1 67.96 ? C34 PEV 500 A 1 HETATM 16 C C33 PEV . . . H 4 83.033 -12.186 30.008 1 73.19 ? C33 PEV 500 A 1 HETATM 17 C C32 PEV . . . H 4 83.465 -11.149 31.038 1 76.81 ? C32 PEV 500 A 1 HETATM 18 C C31 PEV . . . H 4 84.956 -11.234 31.255 1 82.87 ? C31 PEV 500 A 1 HETATM 19 O O31 PEV . . . H 4 85.452 -10.943 32.329 1 85.94 ? O31 PEV 500 A 1 HETATM 20 O O2 PEV . . . H 4 85.812 -11.692 30.17 1 85.6 ? O2 PEV 500 A 1 HETATM 21 C C2 PEV . . . H 4 86.571 -10.637 29.568 1 77.21 ? C2 PEV 500 A 1 HETATM 22 C C1 PEV . . . H 4 87.862 -10.379 30.342 1 71.26 ? C1 PEV 500 A 1 HETATM 23 O O3P PEV . . . H 4 88.077 -11.41 31.3 1 70.92 ? O3P PEV 500 A 1 HETATM 24 P P PEV . . . H 4 88.803 -11.075 32.699 1 181.57 ? P PEV 500 A 1 HETATM 25 O O1P PEV . . . H 4 88.186 -11.939 33.774 1 181.22 ? O1P PEV 500 A 1 HETATM 26 O O2P PEV . . . H 4 88.825 -9.574 32.849 1 182 ? O2P PEV 500 A 1 HETATM 27 O O4P PEV . . . H 4 90.326 -11.557 32.505 1 66.66 ? O4P PEV 500 A 1 HETATM 28 C C4 PEV . . . H 4 91.093 -11.908 33.656 1 72.39 ? C4 PEV 500 A 1 HETATM 29 C C5 PEV . . . H 4 92.537 -11.446 33.494 1 81.7 ? C5 PEV 500 A 1 HETATM 30 N N6 PEV . . . H 4 92.586 -10 33.601 1 85.95 ? N6 PEV 500 A 1 HETATM 31 C C3 PEV . . . H 4 86.882 -11.061 28.142 1 69.64 ? C3 PEV 500 A 1 HETATM 32 O O3 PEV . . . H 4 86.487 -10.038 27.244 1 65.9 ? O3 PEV 500 A 1 HETATM 33 C C11 PEV . . . H 4 85.088 -9.911 26.848 1 68.82 ? C11 PEV 500 A 1 HETATM 34 O O11 PEV . . . H 4 84.737 -10.355 25.762 1 78.5 ? O11 PEV 500 A 1 HETATM 35 C C12 PEV . . . H 4 84.08 -9.231 27.749 1 58.81 ? C12 PEV 500 A 1 HETATM 36 C C13 PEV . . . H 4 83.029 -8.548 26.9 1 51.22 ? C13 PEV 500 A 1 HETATM 37 C C14 PEV . . . H 4 81.874 -8.014 27.744 1 52.97 ? C14 PEV 500 A 1 HETATM 38 C C15 PEV . . . H 4 81.814 -6.482 27.708 1 55.5 ? C15 PEV 500 A 1 HETATM 39 C C16 PEV . . . H 4 80.715 -5.95 28.616 1 58.51 ? C16 PEV 500 A 1 HETATM 40 C C17 PEV . . . H 4 80.658 -4.431 28.59 1 61.12 ? C17 PEV 500 A 1 HETATM 41 C C18 PEV . . . H 4 79.669 -3.899 29.63 1 61.68 ? C18 PEV 500 A 1 HETATM 42 C C19 PEV . . . H 4 78.262 -4.449 29.401 1 65 ? C19 PEV 500 A 1 HETATM 43 C C20 PEV . . . H 4 77.71 -5.038 30.688 1 67.95 ? C20 PEV 500 A 1 HETATM 44 C C21 PEV . . . H 4 76.188 -5.075 30.698 1 71.27 ? C21 PEV 500 A 1 HETATM 45 C C22 PEV . . . H 4 75.633 -5.877 29.517 1 70.62 ? C22 PEV 500 A 1 HETATM 46 C C23 PEV . . . H 4 74.112 -5.755 29.454 1 66.38 ? C23 PEV 500 A 1 HETATM 47 C C24 PEV . . . H 4 73.437 -7.108 29.589 1 60.84 ? C24 PEV 500 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 307 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 47 #