data_3PEJ # _model_server_result.job_id nCtnLuisYF0B2mhcur_cXQ _model_server_result.datetime_utc '2025-01-15 12:52:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3pej # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":1001}' # _entry.id 3PEJ # _exptl.entry_id 3PEJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 558.663 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description MACBECIN _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3PEJ _cell.length_a 96.88 _cell.length_b 96.88 _cell.length_c 159.698 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3PEJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 94 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 42 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 PISA dimeric 2 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D 1 1 B,E,F,G 2 1 A,C,D 3 1 B,E,F,G 3 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # _chem_comp.formula 'C30 H42 N2 O8' _chem_comp.formula_weight 558.663 _chem_comp.id BC2 _chem_comp.mon_nstd_flag . _chem_comp.name MACBECIN _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O23 C2 BC2 doub 70 n n C2 C3 BC2 sing 71 n n C3 C4 BC2 doub 72 n n C4 C5 BC2 sing 73 n n C5 O24 BC2 doub 74 n n C5 C6 BC2 sing 75 n n C3 N22 BC2 sing 76 n n N22 C21 BC2 sing 77 n n C21 O37 BC2 doub 78 n n C21 C20 BC2 sing 79 n n C20 C36 BC2 sing 80 n n C20 C19 BC2 doub 81 n n C19 C18 BC2 sing 82 n n C18 C17 BC2 doub 83 n n C17 C16 BC2 sing 84 n n C16 C35 BC2 sing 85 n n C2 C1 BC2 sing 86 e n C6 C1 BC2 doub 87 n n C1 C7 BC2 sing 88 n n C7 O38 BC2 sing 89 n n O38 C39 BC2 sing 90 n n C7 C8 BC2 sing 91 n n C8 C25 BC2 sing 92 e n C8 C9 BC2 sing 93 n n C9 C10 BC2 sing 94 n n C10 O26 BC2 sing 95 n n O26 C27 BC2 sing 96 n n C10 C11 BC2 sing 97 n n C11 O28 BC2 sing 98 n n O28 C40 BC2 sing 99 n n C11 C12 BC2 sing 100 n n C12 C29 BC2 sing 101 n n C12 C13 BC2 sing 102 n n C13 C14 BC2 doub 103 n n C14 C30 BC2 sing 104 n n C16 C15 BC2 sing 105 n n C14 C15 BC2 sing 106 n n C15 O31 BC2 sing 107 n n O31 C32 BC2 sing 108 n n C32 O33 BC2 doub 109 n n C32 N34 BC2 sing 110 n n C4 H4C1 BC2 sing 111 n n N22 H22 BC2 sing 112 n n C6 H6C1 BC2 sing 113 n n C36 H361 BC2 sing 114 n n C36 H362 BC2 sing 115 n n C36 H363 BC2 sing 116 n n C17 H17 BC2 sing 117 n n C16 H16 BC2 sing 118 n n C35 H351 BC2 sing 119 n n C35 H352 BC2 sing 120 n n C35 H353 BC2 sing 121 n n C15 H15 BC2 sing 122 n n C7 H7 BC2 sing 123 n n C8 H8 BC2 sing 124 n n C39 H391 BC2 sing 125 n n C39 H392 BC2 sing 126 n n C39 H393 BC2 sing 127 n n C25 H251 BC2 sing 128 n n C25 H252 BC2 sing 129 n n C25 H253 BC2 sing 130 n n C9 H9C1 BC2 sing 131 n n C9 H9C2 BC2 sing 132 n n C10 H10 BC2 sing 133 n n C11 H11 BC2 sing 134 n n C27 H271 BC2 sing 135 n n C27 H272 BC2 sing 136 n n C27 H273 BC2 sing 137 n n C12 H12 BC2 sing 138 n n C40 H401 BC2 sing 139 e n C40 H402 BC2 sing 140 n n C40 H403 BC2 sing 141 n n C29 H291 BC2 sing 142 n n C29 H292 BC2 sing 143 n n C29 H293 BC2 sing 144 n n C13 H13 BC2 sing 145 n n C30 H301 BC2 sing 146 n n C30 H302 BC2 sing 147 n n C30 H303 BC2 sing 148 n n N34 H341 BC2 sing 149 n n N34 H342 BC2 sing 150 n n C18 H18 BC2 sing 151 n n C19 H19 BC2 sing 152 n n # _atom_sites.entry_id 3PEJ _atom_sites.fract_transf_matrix[1][1] 0.010322 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010322 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006262 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 BC2 A 1 1001 1001 BC2 BC2 . D 3 SO4 A 1 1 1 SO4 SO4 . E 2 BC2 B 1 1001 1001 BC2 BC2 . F 3 SO4 B 1 2 2 SO4 SO4 . G 3 SO4 B 1 3 3 SO4 SO4 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O23 BC2 . . . E 2 -1.938 -31.353 -7.472 1 79.17 ? O23 BC2 1001 B 1 HETATM 2 C C2 BC2 . . . E 2 -1.505 -30.184 -7.55 1 68.86 ? C2 BC2 1001 B 1 HETATM 3 C C3 BC2 . . . E 2 -2.391 -29.063 -7.971 1 71.02 ? C3 BC2 1001 B 1 HETATM 4 C C4 BC2 . . . E 2 -1.859 -27.777 -8.036 1 72.14 ? C4 BC2 1001 B 1 HETATM 5 C C5 BC2 . . . E 2 -0.516 -27.525 -7.738 1 40.77 ? C5 BC2 1001 B 1 HETATM 6 O O24 BC2 . . . E 2 -0.079 -26.354 -7.822 1 98.69 ? O24 BC2 1001 B 1 HETATM 7 C C6 BC2 . . . E 2 0.353 -28.554 -7.359 1 64.78 ? C6 BC2 1001 B 1 HETATM 8 N N22 BC2 . . . E 2 -3.703 -29.257 -8.249 1 124.22 ? N22 BC2 1001 B 1 HETATM 9 C C21 BC2 . . . E 2 -4.203 -30 -9.245 1 34.97 ? C21 BC2 1001 B 1 HETATM 10 O O37 BC2 . . . E 2 -5.416 -30.091 -9.351 1 61.1 ? O37 BC2 1001 B 1 HETATM 11 C C20 BC2 . . . E 2 -3.359 -30.742 -10.197 1 103.26 ? C20 BC2 1001 B 1 HETATM 12 C C36 BC2 . . . E 2 -3.714 -32.17 -10.494 1 49.07 ? C36 BC2 1001 B 1 HETATM 13 C C19 BC2 . . . E 2 -2.297 -30.166 -10.801 1 64.26 ? C19 BC2 1001 B 1 HETATM 14 C C18 BC2 . . . E 2 -1.413 -30.895 -11.716 1 57.74 ? C18 BC2 1001 B 1 HETATM 15 C C17 BC2 . . . E 2 -0.838 -30.347 -12.791 1 79.2 ? C17 BC2 1001 B 1 HETATM 16 C C16 BC2 . . . E 2 -1.102 -28.917 -13.201 1 53.03 ? C16 BC2 1001 B 1 HETATM 17 C C35 BC2 . . . E 2 -1.906 -28.931 -14.497 1 36.32 ? C35 BC2 1001 B 1 HETATM 18 C C1 BC2 . . . E 2 -0.077 -29.882 -7.262 1 48.42 ? C1 BC2 1001 B 1 HETATM 19 C C7 BC2 . . . E 2 0.856 -30.975 -6.874 1 72.69 ? C7 BC2 1001 B 1 HETATM 20 O O38 BC2 . . . E 2 1.695 -30.556 -5.793 1 47.44 ? O38 BC2 1001 B 1 HETATM 21 C C39 BC2 . . . E 2 2.206 -31.673 -5.066 1 152.61 ? C39 BC2 1001 B 1 HETATM 22 C C8 BC2 . . . E 2 1.699 -31.459 -8.064 1 49.22 ? C8 BC2 1001 B 1 HETATM 23 C C25 BC2 . . . E 2 0.803 -32.06 -9.143 1 52.84 ? C25 BC2 1001 B 1 HETATM 24 C C9 BC2 . . . E 2 2.616 -30.352 -8.597 1 89.65 ? C9 BC2 1001 B 1 HETATM 25 C C10 BC2 . . . E 2 3.155 -30.582 -10.011 1 105.96 ? C10 BC2 1001 B 1 HETATM 26 O O26 BC2 . . . E 2 3.981 -31.741 -10.034 1 54.83 ? O26 BC2 1001 B 1 HETATM 27 C C27 BC2 . . . E 2 3.86 -32.448 -11.266 1 92.2 ? C27 BC2 1001 B 1 HETATM 28 C C11 BC2 . . . E 2 3.989 -29.405 -10.512 1 111.58 ? C11 BC2 1001 B 1 HETATM 29 O O28 BC2 . . . E 2 4.959 -29.054 -9.518 1 90.46 ? O28 BC2 1001 B 1 HETATM 30 C C40 BC2 . . . E 2 6.249 -29.611 -9.773 1 92.21 ? C40 BC2 1001 B 1 HETATM 31 C C12 BC2 . . . E 2 3.122 -28.192 -10.844 1 42.85 ? C12 BC2 1001 B 1 HETATM 32 C C29 BC2 . . . E 2 3.99 -26.961 -11.062 1 75.08 ? C29 BC2 1001 B 1 HETATM 33 C C13 BC2 . . . E 2 2.282 -28.365 -12.096 1 129.54 ? C13 BC2 1001 B 1 HETATM 34 C C14 BC2 . . . E 2 0.983 -27.998 -12.121 1 45.19 ? C14 BC2 1001 B 1 HETATM 35 C C30 BC2 . . . E 2 0.338 -27.424 -10.896 1 88.51 ? C30 BC2 1001 B 1 HETATM 36 C C15 BC2 . . . E 2 0.173 -28.097 -13.385 1 98.11 ? C15 BC2 1001 B 1 HETATM 37 O O31 BC2 . . . E 2 -0.264 -26.768 -13.691 1 74.61 ? O31 BC2 1001 B 1 HETATM 38 C C32 BC2 . . . E 2 0.609 -25.95 -14.529 1 19.61 ? C32 BC2 1001 B 1 HETATM 39 O O33 BC2 . . . E 2 1.788 -26.243 -14.683 1 78.56 ? O33 BC2 1001 B 1 HETATM 40 N N34 BC2 . . . E 2 0.074 -24.878 -15.112 1 79.14 ? N34 BC2 1001 B 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 278 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 40 #