data_3PEQ
#
_model_server_result.job_id            dDwT84dg261PZkVp3yIn1Q 
_model_server_result.datetime_utc      '2024-11-16 07:26:03' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3peq 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"K","auth_seq_id":478}' 
#
_entry.id    3PEQ 
#
_exptl.entry_id    3PEQ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              264.315 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'hexyl beta-D-glucopyranoside' 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          97.76 
_cell.angle_gamma         90 
_cell.entry_id            3PEQ 
_cell.length_a            39.472 
_cell.length_b            95.535 
_cell.length_c            96.537 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3PEQ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
PISA dimeric 2 software_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,G,H,I,N 1 1 
B,J,K,L,M,O 2 1 
A,C,D,E,F,G,H,I,N 3 1 
B,J,K,L,M,O 3 2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_656 -x+1,y+1/2,-z+1 -1 0 0 0 1 0 0 0 -1 26.437201 47.7675 95.652948 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 E N N 
? 3 K N N 
#
_chem_comp.formula           'C12 H24 O6' 
_chem_comp.formula_weight    264.315 
_chem_comp.id                JZR 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              'hexyl beta-D-glucopyranoside' 
_chem_comp.type              d-saccharide 
_chem_comp.pdbx_synonyms     'hexyl beta-D-glucoside;hexyl D-glucoside;hexyl glucoside' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 JZR sing 245 n n 
C1 C2 JZR sing 246 n n 
C1 O5 JZR sing 247 n n 
O1 C1' JZR sing 248 n n 
C2 O2 JZR sing 249 n n 
C2 C3 JZR sing 250 n n 
C3 O3 JZR sing 251 n n 
C3 C4 JZR sing 252 n n 
C4 O4 JZR sing 253 n n 
C4 C5 JZR sing 254 n n 
C5 O5 JZR sing 255 n n 
C5 C6 JZR sing 256 n n 
C6 O6 JZR sing 257 n n 
C1' C2' JZR sing 258 n n 
C2' C3' JZR sing 259 n n 
C3' C4' JZR sing 260 n n 
C4' C5' JZR sing 261 n n 
C5' C6' JZR sing 262 n n 
C1 H1 JZR sing 263 n n 
C2 H2 JZR sing 264 n n 
O2 HO2 JZR sing 265 n n 
C3 H3 JZR sing 266 n n 
O3 HO3 JZR sing 267 n n 
C4 H4 JZR sing 268 n n 
O4 HO4 JZR sing 269 n n 
C5 H5 JZR sing 270 n n 
C6 H61 JZR sing 271 n n 
C6 H62 JZR sing 272 n n 
O6 HO6 JZR sing 273 n n 
C1' H1' JZR sing 274 n n 
C1' "H1'A" JZR sing 275 n n 
C2' H2' JZR sing 276 n n 
C2' "H2'A" JZR sing 277 n n 
C3' H3' JZR sing 278 n n 
C3' "H3'A" JZR sing 279 n n 
C4' H4' JZR sing 280 n n 
C4' "H4'A" JZR sing 281 n n 
C5' H5' JZR sing 282 n n 
C5' "H5'A" JZR sing 283 n n 
C6' H6' JZR sing 284 n n 
C6' "H6'A" JZR sing 285 n n 
C6' "H6'B" JZR sing 286 n n 
#
_atom_sites.entry_id                     3PEQ 
_atom_sites.fract_transf_matrix[1][1]    0.025334 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.003453 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010467 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010454 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 3EQ A 1 1 1 3EQ 3EQ . 
D 3 JZR A 1 478 1 JZR JZR . 
E 3 JZR A 1 3 3 JZR JZR . 
F 4 IOD A 1 2 2 IOD IOD . 
G 4 IOD A 1 6 6 IOD IOD . 
H 4 IOD A 1 7 7 IOD IOD . 
I 4 IOD A 1 8 8 IOD IOD . 
J 2 3EQ B 1 2 2 3EQ 3EQ . 
K 3 JZR B 1 478 2 JZR JZR . 
L 4 IOD B 1 3 3 IOD IOD . 
M 4 IOD B 1 5 5 IOD IOD . 
N 5 HOH A 1 4 4 HOH HOH . 
N 5 HOH A 2 5 5 HOH HOH . 
N 5 HOH A 3 9 9 HOH HOH . 
N 5 HOH A 4 11 11 HOH HOH . 
N 5 HOH A 5 13 13 HOH HOH . 
N 5 HOH A 6 14 14 HOH HOH . 
N 5 HOH A 7 16 16 HOH HOH . 
N 5 HOH A 8 17 17 HOH HOH . 
N 5 HOH A 9 19 19 HOH HOH . 
N 5 HOH A 10 20 20 HOH HOH . 
N 5 HOH A 11 23 23 HOH HOH . 
N 5 HOH A 12 24 24 HOH HOH . 
N 5 HOH A 13 27 27 HOH HOH . 
N 5 HOH A 14 28 28 HOH HOH . 
N 5 HOH A 15 29 29 HOH HOH . 
N 5 HOH A 16 30 30 HOH HOH . 
N 5 HOH A 17 35 35 HOH HOH . 
N 5 HOH A 18 36 36 HOH HOH . 
N 5 HOH A 19 38 38 HOH HOH . 
N 5 HOH A 20 41 41 HOH HOH . 
N 5 HOH A 21 42 42 HOH HOH . 
N 5 HOH A 22 43 43 HOH HOH . 
N 5 HOH A 23 44 44 HOH HOH . 
N 5 HOH A 24 47 47 HOH HOH . 
N 5 HOH A 25 50 50 HOH HOH . 
N 5 HOH A 26 51 51 HOH HOH . 
N 5 HOH A 27 52 52 HOH HOH . 
N 5 HOH A 28 53 53 HOH HOH . 
N 5 HOH A 29 55 55 HOH HOH . 
N 5 HOH A 30 56 56 HOH HOH . 
N 5 HOH A 31 57 57 HOH HOH . 
N 5 HOH A 32 58 58 HOH HOH . 
N 5 HOH A 33 59 59 HOH HOH . 
N 5 HOH A 34 61 61 HOH HOH . 
N 5 HOH A 35 62 62 HOH HOH . 
N 5 HOH A 36 63 63 HOH HOH . 
N 5 HOH A 37 64 64 HOH HOH . 
N 5 HOH A 38 65 65 HOH HOH . 
N 5 HOH A 39 66 66 HOH HOH . 
N 5 HOH A 40 69 69 HOH HOH . 
N 5 HOH A 41 72 72 HOH HOH . 
N 5 HOH A 42 73 73 HOH HOH . 
N 5 HOH A 43 74 74 HOH HOH . 
N 5 HOH A 44 76 76 HOH HOH . 
N 5 HOH A 45 77 77 HOH HOH . 
N 5 HOH A 46 78 78 HOH HOH . 
N 5 HOH A 47 79 79 HOH HOH . 
N 5 HOH A 48 81 81 HOH HOH . 
N 5 HOH A 49 84 84 HOH HOH . 
N 5 HOH A 50 85 85 HOH HOH . 
N 5 HOH A 51 86 86 HOH HOH . 
N 5 HOH A 52 88 88 HOH HOH . 
N 5 HOH A 53 90 90 HOH HOH . 
N 5 HOH A 54 91 91 HOH HOH . 
N 5 HOH A 55 92 92 HOH HOH . 
N 5 HOH A 56 93 93 HOH HOH . 
N 5 HOH A 57 96 96 HOH HOH . 
N 5 HOH A 58 99 99 HOH HOH . 
N 5 HOH A 59 100 100 HOH HOH . 
N 5 HOH A 60 102 102 HOH HOH . 
N 5 HOH A 61 106 106 HOH HOH . 
N 5 HOH A 62 108 108 HOH HOH . 
N 5 HOH A 63 109 109 HOH HOH . 
N 5 HOH A 64 111 111 HOH HOH . 
N 5 HOH A 65 112 112 HOH HOH . 
N 5 HOH A 66 114 114 HOH HOH . 
N 5 HOH A 67 115 115 HOH HOH . 
N 5 HOH A 68 116 116 HOH HOH . 
N 5 HOH A 69 118 118 HOH HOH . 
N 5 HOH A 70 124 124 HOH HOH . 
N 5 HOH A 71 125 125 HOH HOH . 
N 5 HOH A 72 126 126 HOH HOH . 
N 5 HOH A 73 127 127 HOH HOH . 
N 5 HOH A 74 128 128 HOH HOH . 
N 5 HOH A 75 129 129 HOH HOH . 
N 5 HOH A 76 130 130 HOH HOH . 
N 5 HOH A 77 131 131 HOH HOH . 
N 5 HOH A 78 132 132 HOH HOH . 
N 5 HOH A 79 133 133 HOH HOH . 
N 5 HOH A 80 134 134 HOH HOH . 
N 5 HOH A 81 135 135 HOH HOH . 
N 5 HOH A 82 136 136 HOH HOH . 
N 5 HOH A 83 146 146 HOH HOH . 
N 5 HOH A 84 147 147 HOH HOH . 
N 5 HOH A 85 148 148 HOH HOH . 
N 5 HOH A 86 149 149 HOH HOH . 
N 5 HOH A 87 150 150 HOH HOH . 
N 5 HOH A 88 151 151 HOH HOH . 
N 5 HOH A 89 152 152 HOH HOH . 
N 5 HOH A 90 153 153 HOH HOH . 
N 5 HOH A 91 154 154 HOH HOH . 
N 5 HOH A 92 155 155 HOH HOH . 
N 5 HOH A 93 156 156 HOH HOH . 
N 5 HOH A 94 157 157 HOH HOH . 
N 5 HOH A 95 166 166 HOH HOH . 
N 5 HOH A 96 167 167 HOH HOH . 
N 5 HOH A 97 479 1 HOH HOH . 
N 5 HOH A 98 480 2 HOH HOH . 
N 5 HOH A 99 481 3 HOH HOH . 
N 5 HOH A 100 482 6 HOH HOH . 
N 5 HOH A 101 483 7 HOH HOH . 
N 5 HOH A 102 484 8 HOH HOH . 
O 5 HOH B 1 10 10 HOH HOH . 
O 5 HOH B 2 12 12 HOH HOH . 
O 5 HOH B 3 15 15 HOH HOH . 
O 5 HOH B 4 18 18 HOH HOH . 
O 5 HOH B 5 21 21 HOH HOH . 
O 5 HOH B 6 22 22 HOH HOH . 
O 5 HOH B 7 25 25 HOH HOH . 
O 5 HOH B 8 26 26 HOH HOH . 
O 5 HOH B 9 31 31 HOH HOH . 
O 5 HOH B 10 32 32 HOH HOH . 
O 5 HOH B 11 33 33 HOH HOH . 
O 5 HOH B 12 34 34 HOH HOH . 
O 5 HOH B 13 37 37 HOH HOH . 
O 5 HOH B 14 39 39 HOH HOH . 
O 5 HOH B 15 40 40 HOH HOH . 
O 5 HOH B 16 45 45 HOH HOH . 
O 5 HOH B 17 46 46 HOH HOH . 
O 5 HOH B 18 48 48 HOH HOH . 
O 5 HOH B 19 49 49 HOH HOH . 
O 5 HOH B 20 54 54 HOH HOH . 
O 5 HOH B 21 60 60 HOH HOH . 
O 5 HOH B 22 67 67 HOH HOH . 
O 5 HOH B 23 68 68 HOH HOH . 
O 5 HOH B 24 70 70 HOH HOH . 
O 5 HOH B 25 71 71 HOH HOH . 
O 5 HOH B 26 75 75 HOH HOH . 
O 5 HOH B 27 80 80 HOH HOH . 
O 5 HOH B 28 82 82 HOH HOH . 
O 5 HOH B 29 83 83 HOH HOH . 
O 5 HOH B 30 87 87 HOH HOH . 
O 5 HOH B 31 89 89 HOH HOH . 
O 5 HOH B 32 94 94 HOH HOH . 
O 5 HOH B 33 95 95 HOH HOH . 
O 5 HOH B 34 97 97 HOH HOH . 
O 5 HOH B 35 98 98 HOH HOH . 
O 5 HOH B 36 101 101 HOH HOH . 
O 5 HOH B 37 103 103 HOH HOH . 
O 5 HOH B 38 104 104 HOH HOH . 
O 5 HOH B 39 105 105 HOH HOH . 
O 5 HOH B 40 107 107 HOH HOH . 
O 5 HOH B 41 110 110 HOH HOH . 
O 5 HOH B 42 113 113 HOH HOH . 
O 5 HOH B 43 117 117 HOH HOH . 
O 5 HOH B 44 119 119 HOH HOH . 
O 5 HOH B 45 120 120 HOH HOH . 
O 5 HOH B 46 121 121 HOH HOH . 
O 5 HOH B 47 122 122 HOH HOH . 
O 5 HOH B 48 123 123 HOH HOH . 
O 5 HOH B 49 137 137 HOH HOH . 
O 5 HOH B 50 138 138 HOH HOH . 
O 5 HOH B 51 139 139 HOH HOH . 
O 5 HOH B 52 140 140 HOH HOH . 
O 5 HOH B 53 141 141 HOH HOH . 
O 5 HOH B 54 142 142 HOH HOH . 
O 5 HOH B 55 143 143 HOH HOH . 
O 5 HOH B 56 144 144 HOH HOH . 
O 5 HOH B 57 145 145 HOH HOH . 
O 5 HOH B 58 158 158 HOH HOH . 
O 5 HOH B 59 159 159 HOH HOH . 
O 5 HOH B 60 160 160 HOH HOH . 
O 5 HOH B 61 161 161 HOH HOH . 
O 5 HOH B 62 162 162 HOH HOH . 
O 5 HOH B 63 163 163 HOH HOH . 
O 5 HOH B 64 164 164 HOH HOH . 
O 5 HOH B 65 165 165 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 JZR . . . K 3 -8.613 -17.699 20.288 1 42.21 ? C1 JZR 478 B 1 
HETATM 2 O O1 JZR . . . K 3 -7.969 -16.85 19.363 1 41.8 ? O1 JZR 478 B 1 
HETATM 3 C C2 JZR . . . K 3 -10.021 -17.88 19.768 1 42.77 ? C2 JZR 478 B 1 
HETATM 4 O O2 JZR . . . K 3 -10.653 -16.61 19.753 1 41.58 ? O2 JZR 478 B 1 
HETATM 5 C C3 JZR . . . K 3 -10.773 -18.807 20.7 1 43.17 ? C3 JZR 478 B 1 
HETATM 6 O O3 JZR . . . K 3 -12.089 -19.026 20.206 1 41.99 ? O3 JZR 478 B 1 
HETATM 7 C C4 JZR . . . K 3 -10.055 -20.137 20.738 1 43.84 ? C4 JZR 478 B 1 
HETATM 8 O O4 JZR . . . K 3 -10.637 -20.906 21.773 1 44.95 ? O4 JZR 478 B 1 
HETATM 9 C C5 JZR . . . K 3 -8.596 -19.961 21.098 1 44.28 ? C5 JZR 478 B 1 
HETATM 10 O O5 JZR . . . K 3 -7.943 -18.955 20.311 1 43.98 ? O5 JZR 478 B 1 
HETATM 11 C C6 JZR . . . K 3 -7.915 -21.262 20.766 1 44.49 ? C6 JZR 478 B 1 
HETATM 12 O O6 JZR . . . K 3 -6.663 -21.269 21.43 1 47.28 ? O6 JZR 478 B 1 
HETATM 13 C C1' JZR . . . K 3 -7.112 -15.956 20.05 1 41.18 ? C1' JZR 478 B 1 
HETATM 14 C C2' JZR . . . K 3 -6.042 -15.545 19.067 1 40.81 ? C2' JZR 478 B 1 
HETATM 15 C C3' JZR . . . K 3 -5.058 -14.608 19.725 1 39.9 ? C3' JZR 478 B 1 
HETATM 16 C C4' JZR . . . K 3 -3.712 -15.267 19.791 1 37.9 ? C4' JZR 478 B 1 
HETATM 17 C C5' JZR . . . K 3 -2.686 -14.253 20.213 1 36.08 ? C5' JZR 478 B 1 
HETATM 18 C C6' JZR . . . K 3 -1.404 -14.968 20.516 1 35.49 ? C6' JZR 478 B 1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           28 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           254 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           18 
#