data_3PEU # _model_server_result.job_id PhO-6Z6tMZgIV1aNqsD3bg _model_server_result.datetime_utc '2025-08-31 12:28:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3peu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":1003}' # _entry.id 3PEU # _exptl.entry_id 3PEU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 660.035 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'INOSITOL HEXAKISPHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3PEU _cell.length_a 110.356 _cell.length_b 110.356 _cell.length_c 201.453 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3PEU _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? dimeric 2 author_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I 1 1 B,E,F,G,I 2 1 A,C,D,H 2 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_666 x-y+1,-y+1,-z+1 1 0 0 0 -1 0 0 0 -1 55.178 95.571099 201.453 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C TYR 14 A TYR 308 1_555 A N MSE 15 A MSE 309 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale2 A C MSE 15 A MSE 309 1_555 A N ASP 16 A ASP 310 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale3 A C VAL 33 A VAL 327 1_555 A N MSE 34 A MSE 328 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale4 A C MSE 34 A MSE 328 1_555 A N THR 35 A THR 329 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale5 A C SER 106 A SER 400 1_555 A N MSE 107 A MSE 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale6 A C MSE 107 A MSE 401 1_555 A N VAL 108 A VAL 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale7 A C GLU 166 A GLU 460 1_555 A N MSE 167 A MSE 461 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale8 A C MSE 167 A MSE 461 1_555 A N THR 168 A THR 462 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale9 B C LYS 10 B LYS 251 1_555 B N MSE 11 B MSE 252 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale10 B C MSE 11 B MSE 252 1_555 B N PHE 12 B PHE 253 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale11 B C PHE 130 B PHE 371 1_555 B N MSE 131 B MSE 372 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale12 B C MSE 131 B MSE 372 1_555 B N ALA 132 B ALA 373 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale13 B C ASN 156 B ASN 397 1_555 B N MSE 157 B MSE 398 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale14 B C MSE 157 B MSE 398 1_555 B N GLY 158 B GLY 399 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale15 B C ARG 176 B ARG 417 1_555 B N MSE 177 B MSE 418 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale16 B C MSE 177 B MSE 418 1_555 B N GLY 178 B GLY 419 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale17 B C ARG 265 B ARG 506 1_555 B N MSE 266 B MSE 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale18 B C MSE 266 B MSE 507 1_555 B N ALA 267 B ALA 508 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale19 B C ASN 288 B ASN 529 1_555 B N MSE 289 B MSE 530 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale20 B C MSE 289 B MSE 530 1_555 B N GLU 290 B GLU 531 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale21 B C GLU 294 B GLU 535 1_555 B N MSE 295 B MSE 536 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale22 B C MSE 295 B MSE 536 1_555 B N SER 296 B SER 537 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? # _chem_comp.formula 'C6 H18 O24 P6' _chem_comp.formula_weight 660.035 _chem_comp.id IHP _chem_comp.mon_nstd_flag . _chem_comp.name 'INOSITOL HEXAKISPHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'MYO-INOSITOL HEXAKISPHOSPHATE;INOSITOL 1,2,3,4,5,6-HEXAKISPHOSPHATE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 IHP sing 165 n n C1 C6 IHP sing 166 n n C1 O11 IHP sing 167 n n C1 H1 IHP sing 168 n n C2 C3 IHP sing 169 n n C2 O12 IHP sing 170 n n C2 H2 IHP sing 171 n n C3 C4 IHP sing 172 n n C3 O13 IHP sing 173 n n C3 H3 IHP sing 174 n n C4 C5 IHP sing 175 n n C4 O14 IHP sing 176 n n C4 H4 IHP sing 177 n n C5 C6 IHP sing 178 n n C5 O15 IHP sing 179 n n C5 H5 IHP sing 180 n n C6 O16 IHP sing 181 n n C6 H6 IHP sing 182 n n O11 P1 IHP sing 183 n n P1 O21 IHP doub 184 n n P1 O31 IHP sing 185 n n P1 O41 IHP sing 186 n n O31 H31 IHP sing 187 n n O41 H41 IHP sing 188 n n O12 P2 IHP sing 189 n n P2 O22 IHP doub 190 n n P2 O32 IHP sing 191 n n P2 O42 IHP sing 192 n n O32 H32 IHP sing 193 n n O42 H42 IHP sing 194 n n O13 P3 IHP sing 195 n n P3 O23 IHP doub 196 n n P3 O33 IHP sing 197 n n P3 O43 IHP sing 198 n n O33 H33 IHP sing 199 n n O43 H43 IHP sing 200 n n O14 P4 IHP sing 201 n n P4 O24 IHP doub 202 n n P4 O34 IHP sing 203 n n P4 O44 IHP sing 204 n n O34 H34 IHP sing 205 n n O44 H44 IHP sing 206 n n O15 P5 IHP sing 207 n n P5 O25 IHP doub 208 n n P5 O35 IHP sing 209 n n P5 O45 IHP sing 210 n n O35 H35 IHP sing 211 n n O45 H45 IHP sing 212 n n O16 P6 IHP sing 213 n n P6 O26 IHP doub 214 n n P6 O36 IHP sing 215 n n P6 O46 IHP sing 216 n n O36 H36 IHP sing 217 n n O46 H46 IHP sing 218 n n # _atom_sites.entry_id 3PEU _atom_sites.fract_transf_matrix[1][1] 0.009062 _atom_sites.fract_transf_matrix[1][2] 0.005232 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010463 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004964 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 SO4 A 1 1001 1001 SO4 SO4 . D 4 GOL A 1 1002 1002 GOL GOL . E 5 IHP B 1 1003 1003 IHP IHP . F 4 GOL B 1 1004 1004 GOL GOL . G 4 GOL B 1 1005 1005 GOL GOL . H 6 HOH A 1 1006 1006 HOH HOH . H 6 HOH A 2 1007 1007 HOH HOH . H 6 HOH A 3 1008 1008 HOH HOH . H 6 HOH A 4 1009 1009 HOH HOH . H 6 HOH A 5 1010 1010 HOH HOH . H 6 HOH A 6 1011 1011 HOH HOH . H 6 HOH A 7 1012 1012 HOH HOH . H 6 HOH A 8 1013 1013 HOH HOH . H 6 HOH A 9 1014 1014 HOH HOH . H 6 HOH A 10 1015 1015 HOH HOH . H 6 HOH A 11 1016 1016 HOH HOH . H 6 HOH A 12 1017 1017 HOH HOH . H 6 HOH A 13 1018 1018 HOH HOH . H 6 HOH A 14 1019 1019 HOH HOH . H 6 HOH A 15 1020 1020 HOH HOH . H 6 HOH A 16 1021 1021 HOH HOH . H 6 HOH A 17 1022 1022 HOH HOH . H 6 HOH A 18 1023 1023 HOH HOH . I 6 HOH B 1 1024 1024 HOH HOH . I 6 HOH B 2 1025 1025 HOH HOH . I 6 HOH B 3 1026 1026 HOH HOH . I 6 HOH B 4 1027 1027 HOH HOH . I 6 HOH B 5 1028 1028 HOH HOH . I 6 HOH B 6 1029 1029 HOH HOH . I 6 HOH B 7 1030 1030 HOH HOH . I 6 HOH B 8 1031 1031 HOH HOH . I 6 HOH B 9 1032 1032 HOH HOH . I 6 HOH B 10 1033 1033 HOH HOH . I 6 HOH B 11 1034 1034 HOH HOH . I 6 HOH B 12 1035 1035 HOH HOH . I 6 HOH B 13 1036 1036 HOH HOH . I 6 HOH B 14 1037 1037 HOH HOH . I 6 HOH B 15 1038 1038 HOH HOH . I 6 HOH B 16 1039 1039 HOH HOH . I 6 HOH B 17 1040 1040 HOH HOH . I 6 HOH B 18 1041 1041 HOH HOH . I 6 HOH B 19 1042 1042 HOH HOH . I 6 HOH B 20 1043 1043 HOH HOH . I 6 HOH B 21 1044 1044 HOH HOH . I 6 HOH B 22 1045 1045 HOH HOH . I 6 HOH B 23 1046 1046 HOH HOH . I 6 HOH B 24 1047 1047 HOH HOH . I 6 HOH B 25 1048 1048 HOH HOH . I 6 HOH B 26 1049 1049 HOH HOH . I 6 HOH B 27 1050 1050 HOH HOH . I 6 HOH B 28 1051 1051 HOH HOH . I 6 HOH B 29 1052 1052 HOH HOH . I 6 HOH B 30 1053 1053 HOH HOH . I 6 HOH B 31 1054 1054 HOH HOH . I 6 HOH B 32 1055 1055 HOH HOH . I 6 HOH B 33 1056 1056 HOH HOH . I 6 HOH B 34 1057 1057 HOH HOH . I 6 HOH B 35 1058 1058 HOH HOH . I 6 HOH B 36 1059 1059 HOH HOH . I 6 HOH B 37 1060 1060 HOH HOH . I 6 HOH B 38 1061 1061 HOH HOH . I 6 HOH B 39 1062 1062 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 IHP . . . E 5 46.743 62.87 108.571 1 50.27 ? C1 IHP 1003 B 1 HETATM 2 C C2 IHP . . . E 5 45.816 62.485 109.724 1 53.48 ? C2 IHP 1003 B 1 HETATM 3 C C3 IHP . . . E 5 46.503 61.404 110.582 1 60.92 ? C3 IHP 1003 B 1 HETATM 4 C C4 IHP . . . E 5 47.712 61.998 111.353 1 56.65 ? C4 IHP 1003 B 1 HETATM 5 C C5 IHP . . . E 5 48.638 62.883 110.427 1 60.11 ? C5 IHP 1003 B 1 HETATM 6 C C6 IHP . . . E 5 47.982 63.561 109.17 1 50.09 ? C6 IHP 1003 B 1 HETATM 7 O O11 IHP . . . E 5 46.183 63.531 107.494 1 47.45 ? O11 IHP 1003 B 1 HETATM 8 P P1 IHP . . . E 5 46.519 63.177 106.008 1 44.76 ? P1 IHP 1003 B 1 HETATM 9 O O21 IHP . . . E 5 45.705 64.158 105.108 1 50.03 ? O21 IHP 1003 B 1 HETATM 10 O O31 IHP . . . E 5 48.039 63.343 105.702 1 43.31 ? O31 IHP 1003 B 1 HETATM 11 O O41 IHP . . . E 5 46.11 61.745 105.743 1 61.26 ? O41 IHP 1003 B 1 HETATM 12 O O12 IHP . . . E 5 45.085 63.487 110.353 1 69.03 ? O12 IHP 1003 B 1 HETATM 13 P P2 IHP . . . E 5 43.611 63.795 109.863 1 52.95 ? P2 IHP 1003 B 1 HETATM 14 O O22 IHP . . . E 5 43.595 65.072 108.96 1 73.15 ? O22 IHP 1003 B 1 HETATM 15 O O32 IHP . . . E 5 43.066 62.573 109.047 1 59.54 ? O32 IHP 1003 B 1 HETATM 16 O O42 IHP . . . E 5 42.739 64.014 111.075 1 93.94 ? O42 IHP 1003 B 1 HETATM 17 O O13 IHP . . . E 5 45.739 60.415 111.246 1 70.22 ? O13 IHP 1003 B 1 HETATM 18 P P3 IHP . . . E 5 44.929 59.28 110.488 1 72.78 ? P3 IHP 1003 B 1 HETATM 19 O O23 IHP . . . E 5 44.481 59.77 109.073 1 84.87 ? O23 IHP 1003 B 1 HETATM 20 O O33 IHP . . . E 5 45.834 58.006 110.351 1 60.56 ? O33 IHP 1003 B 1 HETATM 21 O O43 IHP . . . E 5 43.705 58.981 111.321 1 62.12 ? O43 IHP 1003 B 1 HETATM 22 O O14 IHP . . . E 5 48.28 61.118 112.293 1 71.05 ? O14 IHP 1003 B 1 HETATM 23 P P4 IHP . . . E 5 47.873 61.175 113.832 1 73.31 ? P4 IHP 1003 B 1 HETATM 24 O O24 IHP . . . E 5 46.322 61.274 113.998 1 76.89 ? O24 IHP 1003 B 1 HETATM 25 O O34 IHP . . . E 5 48.375 59.879 114.553 1 65.63 ? O34 IHP 1003 B 1 HETATM 26 O O44 IHP . . . E 5 48.52 62.391 114.458 1 71.92 ? O44 IHP 1003 B 1 HETATM 27 O O15 IHP . . . E 5 49.564 63.716 111.015 1 66.08 ? O15 IHP 1003 B 1 HETATM 28 P P5 IHP . . . E 5 50.93 63.194 111.494 1 61.23 ? P5 IHP 1003 B 1 HETATM 29 O O25 IHP . . . E 5 51.158 61.786 110.89 1 57.6 ? O25 IHP 1003 B 1 HETATM 30 O O35 IHP . . . E 5 52.028 64.183 111.006 1 58.12 ? O35 IHP 1003 B 1 HETATM 31 O O45 IHP . . . E 5 50.902 63.12 112.996 1 64.52 ? O45 IHP 1003 B 1 HETATM 32 O O16 IHP . . . E 5 48.83 64.239 108.281 1 69.17 ? O16 IHP 1003 B 1 HETATM 33 P P6 IHP . . . E 5 49.333 65.724 108.519 1 47.07 ? P6 IHP 1003 B 1 HETATM 34 O O26 IHP . . . E 5 48.161 66.744 108.337 1 44.19 ? O26 IHP 1003 B 1 HETATM 35 O O36 IHP . . . E 5 49.96 65.891 109.939 1 54 ? O36 IHP 1003 B 1 HETATM 36 O O46 IHP . . . E 5 50.4 66.014 107.475 1 52.26 ? O46 IHP 1003 B 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 399 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 36 #