data_3PEU # _model_server_result.job_id 0CFen53oOz7DpJTiWKvknQ _model_server_result.datetime_utc '2025-08-31 12:28:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3peu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":1005}' # _entry.id 3PEU # _exptl.entry_id 3PEU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3PEU _cell.length_a 110.356 _cell.length_b 110.356 _cell.length_c 201.453 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3PEU _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? dimeric 2 author_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I 1 1 B,E,F,G,I 2 1 A,C,D,H 2 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_666 x-y+1,-y+1,-z+1 1 0 0 0 -1 0 0 0 -1 55.178 95.571099 201.453 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 F N N ? 4 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C TYR 14 A TYR 308 1_555 A N MSE 15 A MSE 309 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale2 A C MSE 15 A MSE 309 1_555 A N ASP 16 A ASP 310 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale3 A C VAL 33 A VAL 327 1_555 A N MSE 34 A MSE 328 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale4 A C MSE 34 A MSE 328 1_555 A N THR 35 A THR 329 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale5 A C SER 106 A SER 400 1_555 A N MSE 107 A MSE 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale6 A C MSE 107 A MSE 401 1_555 A N VAL 108 A VAL 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale7 A C GLU 166 A GLU 460 1_555 A N MSE 167 A MSE 461 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale8 A C MSE 167 A MSE 461 1_555 A N THR 168 A THR 462 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale9 B C LYS 10 B LYS 251 1_555 B N MSE 11 B MSE 252 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale10 B C MSE 11 B MSE 252 1_555 B N PHE 12 B PHE 253 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale11 B C PHE 130 B PHE 371 1_555 B N MSE 131 B MSE 372 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale12 B C MSE 131 B MSE 372 1_555 B N ALA 132 B ALA 373 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale13 B C ASN 156 B ASN 397 1_555 B N MSE 157 B MSE 398 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale14 B C MSE 157 B MSE 398 1_555 B N GLY 158 B GLY 399 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale15 B C ARG 176 B ARG 417 1_555 B N MSE 177 B MSE 418 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale16 B C MSE 177 B MSE 418 1_555 B N GLY 178 B GLY 419 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale17 B C ARG 265 B ARG 506 1_555 B N MSE 266 B MSE 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale18 B C MSE 266 B MSE 507 1_555 B N ALA 267 B ALA 508 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale19 B C ASN 288 B ASN 529 1_555 B N MSE 289 B MSE 530 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale20 B C MSE 289 B MSE 530 1_555 B N GLU 290 B GLU 531 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale21 B C GLU 294 B GLU 535 1_555 B N MSE 295 B MSE 536 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale22 B C MSE 295 B MSE 536 1_555 B N SER 296 B SER 537 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 3PEU _atom_sites.fract_transf_matrix[1][1] 0.009062 _atom_sites.fract_transf_matrix[1][2] 0.005232 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010463 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004964 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 SO4 A 1 1001 1001 SO4 SO4 . D 4 GOL A 1 1002 1002 GOL GOL . E 5 IHP B 1 1003 1003 IHP IHP . F 4 GOL B 1 1004 1004 GOL GOL . G 4 GOL B 1 1005 1005 GOL GOL . H 6 HOH A 1 1006 1006 HOH HOH . H 6 HOH A 2 1007 1007 HOH HOH . H 6 HOH A 3 1008 1008 HOH HOH . H 6 HOH A 4 1009 1009 HOH HOH . H 6 HOH A 5 1010 1010 HOH HOH . H 6 HOH A 6 1011 1011 HOH HOH . H 6 HOH A 7 1012 1012 HOH HOH . H 6 HOH A 8 1013 1013 HOH HOH . H 6 HOH A 9 1014 1014 HOH HOH . H 6 HOH A 10 1015 1015 HOH HOH . H 6 HOH A 11 1016 1016 HOH HOH . H 6 HOH A 12 1017 1017 HOH HOH . H 6 HOH A 13 1018 1018 HOH HOH . H 6 HOH A 14 1019 1019 HOH HOH . H 6 HOH A 15 1020 1020 HOH HOH . H 6 HOH A 16 1021 1021 HOH HOH . H 6 HOH A 17 1022 1022 HOH HOH . H 6 HOH A 18 1023 1023 HOH HOH . I 6 HOH B 1 1024 1024 HOH HOH . I 6 HOH B 2 1025 1025 HOH HOH . I 6 HOH B 3 1026 1026 HOH HOH . I 6 HOH B 4 1027 1027 HOH HOH . I 6 HOH B 5 1028 1028 HOH HOH . I 6 HOH B 6 1029 1029 HOH HOH . I 6 HOH B 7 1030 1030 HOH HOH . I 6 HOH B 8 1031 1031 HOH HOH . I 6 HOH B 9 1032 1032 HOH HOH . I 6 HOH B 10 1033 1033 HOH HOH . I 6 HOH B 11 1034 1034 HOH HOH . I 6 HOH B 12 1035 1035 HOH HOH . I 6 HOH B 13 1036 1036 HOH HOH . I 6 HOH B 14 1037 1037 HOH HOH . I 6 HOH B 15 1038 1038 HOH HOH . I 6 HOH B 16 1039 1039 HOH HOH . I 6 HOH B 17 1040 1040 HOH HOH . I 6 HOH B 18 1041 1041 HOH HOH . I 6 HOH B 19 1042 1042 HOH HOH . I 6 HOH B 20 1043 1043 HOH HOH . I 6 HOH B 21 1044 1044 HOH HOH . I 6 HOH B 22 1045 1045 HOH HOH . I 6 HOH B 23 1046 1046 HOH HOH . I 6 HOH B 24 1047 1047 HOH HOH . I 6 HOH B 25 1048 1048 HOH HOH . I 6 HOH B 26 1049 1049 HOH HOH . I 6 HOH B 27 1050 1050 HOH HOH . I 6 HOH B 28 1051 1051 HOH HOH . I 6 HOH B 29 1052 1052 HOH HOH . I 6 HOH B 30 1053 1053 HOH HOH . I 6 HOH B 31 1054 1054 HOH HOH . I 6 HOH B 32 1055 1055 HOH HOH . I 6 HOH B 33 1056 1056 HOH HOH . I 6 HOH B 34 1057 1057 HOH HOH . I 6 HOH B 35 1058 1058 HOH HOH . I 6 HOH B 36 1059 1059 HOH HOH . I 6 HOH B 37 1060 1060 HOH HOH . I 6 HOH B 38 1061 1061 HOH HOH . I 6 HOH B 39 1062 1062 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . G 4 61.419 55.673 88.803 1 60.64 ? C1 GOL 1005 B 1 HETATM 2 O O1 GOL . . . G 4 60.241 55.681 88.031 1 56.39 ? O1 GOL 1005 B 1 HETATM 3 C C2 GOL . . . G 4 61.174 55.018 90.158 1 53.55 ? C2 GOL 1005 B 1 HETATM 4 O O2 GOL . . . G 4 61.222 56.001 91.167 1 45.19 ? O2 GOL 1005 B 1 HETATM 5 C C3 GOL . . . G 4 62.276 53.997 90.414 1 62.2 ? C3 GOL 1005 B 1 HETATM 6 O O3 GOL . . . G 4 62.157 53.488 91.723 1 71.83 ? O3 GOL 1005 B 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 336 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 6 #