data_3PF1 # _model_server_result.job_id fDr6czRtwIv-2cPNZCrHsA _model_server_result.datetime_utc '2025-02-27 10:28:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3pf1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":506}' # _entry.id 3PF1 # _exptl.entry_id 3PF1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 306.438 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3PF1 _cell.length_a 62.88 _cell.length_b 145.97 _cell.length_c 151.24 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3PF1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,N 1 1 B,I,J,K,L,M,O 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N ? 2 I N N ? 2 K N N ? 2 L N N ? 2 M N N # _chem_comp.formula 'C16 H34 O5' _chem_comp.formula_weight 306.438 _chem_comp.id C8E _chem_comp.mon_nstd_flag . _chem_comp.name (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 C8E sing 70 n n C1 H11 C8E sing 71 n n C1 H12 C8E sing 72 n n C1 H13 C8E sing 73 n n C2 C3 C8E sing 74 n n C2 H21 C8E sing 75 n n C2 H22 C8E sing 76 n n C3 C4 C8E sing 77 n n C3 H31 C8E sing 78 n n C3 H32 C8E sing 79 n n C4 C5 C8E sing 80 n n C4 H41 C8E sing 81 n n C4 H42 C8E sing 82 n n C5 C6 C8E sing 83 n n C5 H51 C8E sing 84 n n C5 H52 C8E sing 85 n n C6 C7 C8E sing 86 n n C6 H61 C8E sing 87 n n C6 H62 C8E sing 88 n n C7 C8 C8E sing 89 n n C7 H71 C8E sing 90 n n C7 H72 C8E sing 91 n n C8 O9 C8E sing 92 n n C8 H81 C8E sing 93 n n C8 H82 C8E sing 94 n n O9 C10 C8E sing 95 n n C10 C11 C8E sing 96 n n C10 H101 C8E sing 97 n n C10 H102 C8E sing 98 n n C11 O12 C8E sing 99 n n C11 H111 C8E sing 100 n n C11 H112 C8E sing 101 n n O12 C13 C8E sing 102 n n C13 C14 C8E sing 103 n n C13 H131 C8E sing 104 n n C13 H132 C8E sing 105 n n C14 O15 C8E sing 106 n n C14 H141 C8E sing 107 n n C14 H142 C8E sing 108 n n O15 C16 C8E sing 109 n n C16 C17 C8E sing 110 n n C16 H161 C8E sing 111 n n C16 H162 C8E sing 112 n n C17 O18 C8E sing 113 n n C17 H171 C8E sing 114 n n C17 H172 C8E sing 115 n n O18 C19 C8E sing 116 n n C19 C20 C8E sing 117 n n C19 H191 C8E sing 118 n n C19 H192 C8E sing 119 n n C20 O21 C8E sing 120 n n C20 H201 C8E sing 121 n n C20 H202 C8E sing 122 n n O21 HO2 C8E sing 123 n n # _atom_sites.entry_id 3PF1 _atom_sites.fract_transf_matrix[1][1] 0.015903 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006851 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006612 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 C8E A 1 505 505 C8E C8E . D 2 C8E A 1 507 507 C8E C8E . E 2 C8E A 1 508 508 C8E C8E . F 2 C8E A 1 509 509 C8E C8E . G 3 LDA A 1 515 515 LDA LDA . H 3 LDA A 1 525 525 LDA LDA . I 2 C8E B 1 506 506 C8E C8E . J 3 LDA B 1 510 510 LDA LDA . K 2 C8E B 1 520 520 C8E C8E . L 2 C8E B 1 530 530 C8E C8E . M 2 C8E B 1 535 535 C8E C8E . N 4 HOH A 1 425 425 HOH HOH . N 4 HOH A 2 426 426 HOH HOH . N 4 HOH A 3 427 427 HOH HOH . N 4 HOH A 4 428 428 HOH HOH . N 4 HOH A 5 429 429 HOH HOH . N 4 HOH A 6 430 430 HOH HOH . N 4 HOH A 7 431 431 HOH HOH . N 4 HOH A 8 432 432 HOH HOH . N 4 HOH A 9 433 433 HOH HOH . N 4 HOH A 10 434 434 HOH HOH . N 4 HOH A 11 435 435 HOH HOH . N 4 HOH A 12 436 436 HOH HOH . N 4 HOH A 13 437 437 HOH HOH . N 4 HOH A 14 438 438 HOH HOH . N 4 HOH A 15 439 439 HOH HOH . N 4 HOH A 16 440 440 HOH HOH . N 4 HOH A 17 441 441 HOH HOH . N 4 HOH A 18 442 442 HOH HOH . N 4 HOH A 19 443 443 HOH HOH . N 4 HOH A 20 444 444 HOH HOH . N 4 HOH A 21 445 445 HOH HOH . N 4 HOH A 22 446 446 HOH HOH . N 4 HOH A 23 447 447 HOH HOH . N 4 HOH A 24 448 448 HOH HOH . N 4 HOH A 25 449 449 HOH HOH . N 4 HOH A 26 450 450 HOH HOH . N 4 HOH A 27 451 451 HOH HOH . N 4 HOH A 28 452 452 HOH HOH . N 4 HOH A 29 453 453 HOH HOH . N 4 HOH A 30 454 454 HOH HOH . N 4 HOH A 31 455 455 HOH HOH . N 4 HOH A 32 456 456 HOH HOH . N 4 HOH A 33 457 457 HOH HOH . N 4 HOH A 34 458 458 HOH HOH . N 4 HOH A 35 459 459 HOH HOH . N 4 HOH A 36 460 460 HOH HOH . N 4 HOH A 37 461 461 HOH HOH . N 4 HOH A 38 462 462 HOH HOH . N 4 HOH A 39 463 463 HOH HOH . N 4 HOH A 40 464 464 HOH HOH . N 4 HOH A 41 465 465 HOH HOH . N 4 HOH A 42 466 466 HOH HOH . N 4 HOH A 43 467 467 HOH HOH . N 4 HOH A 44 468 468 HOH HOH . N 4 HOH A 45 469 469 HOH HOH . N 4 HOH A 46 470 470 HOH HOH . N 4 HOH A 47 471 471 HOH HOH . N 4 HOH A 48 472 472 HOH HOH . N 4 HOH A 49 473 473 HOH HOH . O 4 HOH B 1 425 425 HOH HOH . O 4 HOH B 2 426 426 HOH HOH . O 4 HOH B 3 427 427 HOH HOH . O 4 HOH B 4 428 428 HOH HOH . O 4 HOH B 5 429 429 HOH HOH . O 4 HOH B 6 430 430 HOH HOH . O 4 HOH B 7 431 431 HOH HOH . O 4 HOH B 8 432 432 HOH HOH . O 4 HOH B 9 433 433 HOH HOH . O 4 HOH B 10 434 434 HOH HOH . O 4 HOH B 11 435 435 HOH HOH . O 4 HOH B 12 436 436 HOH HOH . O 4 HOH B 13 437 437 HOH HOH . O 4 HOH B 14 438 438 HOH HOH . O 4 HOH B 15 439 439 HOH HOH . O 4 HOH B 16 440 440 HOH HOH . O 4 HOH B 17 441 441 HOH HOH . O 4 HOH B 18 442 442 HOH HOH . O 4 HOH B 19 443 443 HOH HOH . O 4 HOH B 20 444 444 HOH HOH . O 4 HOH B 21 445 445 HOH HOH . O 4 HOH B 22 446 446 HOH HOH . O 4 HOH B 23 447 447 HOH HOH . O 4 HOH B 24 448 448 HOH HOH . O 4 HOH B 25 449 449 HOH HOH . O 4 HOH B 26 450 450 HOH HOH . O 4 HOH B 27 451 451 HOH HOH . O 4 HOH B 28 452 452 HOH HOH . O 4 HOH B 29 453 453 HOH HOH . O 4 HOH B 30 454 454 HOH HOH . O 4 HOH B 31 455 455 HOH HOH . O 4 HOH B 32 456 456 HOH HOH . O 4 HOH B 33 457 457 HOH HOH . O 4 HOH B 34 458 458 HOH HOH . O 4 HOH B 35 459 459 HOH HOH . O 4 HOH B 36 460 460 HOH HOH . O 4 HOH B 37 461 461 HOH HOH . O 4 HOH B 38 462 462 HOH HOH . O 4 HOH B 39 463 463 HOH HOH . O 4 HOH B 40 464 464 HOH HOH . O 4 HOH B 41 465 465 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 C8E . . . I 2 -42.301 -26.498 -22.155 1 27.67 ? C1 C8E 506 B 1 HETATM 2 C C2 C8E . . . I 2 -42.642 -25.637 -23.368 1 28.86 ? C2 C8E 506 B 1 HETATM 3 C C3 C8E . . . I 2 -42.28 -24.174 -23.133 1 24.85 ? C3 C8E 506 B 1 HETATM 4 C C4 C8E . . . I 2 -40.808 -23.934 -23.434 1 29.85 ? C4 C8E 506 B 1 HETATM 5 C C5 C8E . . . I 2 -40.492 -22.455 -23.613 1 36.45 ? C5 C8E 506 B 1 HETATM 6 C C6 C8E . . . I 2 -39.31 -21.994 -22.76 1 30.7 ? C6 C8E 506 B 1 HETATM 7 C C7 C8E . . . I 2 -39.616 -20.692 -22.008 1 27.53 ? C7 C8E 506 B 1 HETATM 8 C C8 C8E . . . I 2 -38.3 -20.018 -21.596 1 33.52 ? C8 C8E 506 B 1 HETATM 9 O O9 C8E . . . I 2 -38.341 -18.604 -21.727 1 32.96 ? O9 C8E 506 B 1 HETATM 10 C C10 C8E . . . I 2 -37.99 -17.894 -20.555 1 32.59 ? C10 C8E 506 B 1 HETATM 11 C C11 C8E . . . I 2 -36.934 -16.838 -20.877 1 37.81 ? C11 C8E 506 B 1 HETATM 12 O O12 C8E . . . I 2 -36.519 -16.135 -19.717 1 44.81 ? O12 C8E 506 B 1 HETATM 13 C C13 C8E . . . I 2 -35.293 -16.588 -19.173 1 47.5 ? C13 C8E 506 B 1 HETATM 14 C C14 C8E . . . I 2 -35.397 -16.716 -17.649 1 49.39 ? C14 C8E 506 B 1 HETATM 15 O O15 C8E . . . I 2 -34.17 -16.447 -16.983 1 41.81 ? O15 C8E 506 B 1 HETATM 16 C C16 C8E . . . I 2 -33.632 -17.598 -16.372 1 18.63 ? C16 C8E 506 B 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 23 _model_server_stats.query_time_ms 338 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 16 #