data_3PF3 # _model_server_result.job_id CzkA1te4e9cVGbz6e2cx6Q _model_server_result.datetime_utc '2024-12-26 23:46:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3pf3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":262}' # _entry.id 3PF3 # _exptl.entry_id 3PF3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3PF3 _cell.length_a 56.373 _cell.length_b 102.881 _cell.length_c 118.908 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3PF3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 F N N ? 4 G N N ? 4 H N N ? 4 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C LYS 13 A LYS 13 1_555 A N SCH 14 A SCH 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? covale ? covale2 A C SCH 14 A SCH 14 1_555 A N ASN 15 A ASN 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale3 A C ASN 221 A ASN 221 1_555 A N SCH 222 A SCH 222 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale4 A C SCH 222 A SCH 222 1_555 A N GLU 223 A GLU 223 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale5 A C GLN 227 A GLN 227 1_555 A N SCH 228 A SCH 228 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale6 A C SCH 228 A SCH 228 1_555 A N PRO 229 A PRO 229 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.342 ? metalc ? metalc1 A OE1 GLU 170 A GLU 170 1_555 D CA CA . A CA 260 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.955 ? metalc ? metalc2 D CA CA . A CA 260 1_555 J O HOH . A HOH 291 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.107 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 3PF3 _atom_sites.fract_transf_matrix[1][1] 0.017739 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00972 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00841 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 258 1 SO4 SO4 . C 2 SO4 A 1 259 2 SO4 SO4 . D 3 CA A 1 260 1 CA CA . E 4 GOL A 1 261 1 GOL GOL . F 4 GOL A 1 262 2 GOL GOL . G 4 GOL A 1 263 3 GOL GOL . H 4 GOL A 1 264 4 GOL GOL . I 4 GOL A 1 265 5 GOL GOL . J 5 HOH A 1 266 1 HOH HOH . J 5 HOH A 2 267 2 HOH HOH . J 5 HOH A 3 268 3 HOH HOH . J 5 HOH A 4 269 4 HOH HOH . J 5 HOH A 5 270 5 HOH HOH . J 5 HOH A 6 271 6 HOH HOH . J 5 HOH A 7 272 7 HOH HOH . J 5 HOH A 8 273 8 HOH HOH . J 5 HOH A 9 274 9 HOH HOH . J 5 HOH A 10 275 10 HOH HOH . J 5 HOH A 11 276 11 HOH HOH . J 5 HOH A 12 277 12 HOH HOH . J 5 HOH A 13 278 13 HOH HOH . J 5 HOH A 14 279 14 HOH HOH . J 5 HOH A 15 280 15 HOH HOH . J 5 HOH A 16 281 16 HOH HOH . J 5 HOH A 17 282 17 HOH HOH . J 5 HOH A 18 283 18 HOH HOH . J 5 HOH A 19 284 19 HOH HOH . J 5 HOH A 20 285 20 HOH HOH . J 5 HOH A 21 286 21 HOH HOH . J 5 HOH A 22 287 22 HOH HOH . J 5 HOH A 23 288 23 HOH HOH . J 5 HOH A 24 289 24 HOH HOH . J 5 HOH A 25 290 25 HOH HOH . J 5 HOH A 26 291 26 HOH HOH . J 5 HOH A 27 292 27 HOH HOH . J 5 HOH A 28 293 28 HOH HOH . J 5 HOH A 29 294 29 HOH HOH . J 5 HOH A 30 295 30 HOH HOH . J 5 HOH A 31 296 31 HOH HOH . J 5 HOH A 32 297 32 HOH HOH . J 5 HOH A 33 298 33 HOH HOH . J 5 HOH A 34 299 34 HOH HOH . J 5 HOH A 35 300 35 HOH HOH . J 5 HOH A 36 301 36 HOH HOH . J 5 HOH A 37 302 37 HOH HOH . J 5 HOH A 38 303 38 HOH HOH . J 5 HOH A 39 304 39 HOH HOH . J 5 HOH A 40 305 40 HOH HOH . J 5 HOH A 41 306 41 HOH HOH . J 5 HOH A 42 307 42 HOH HOH . J 5 HOH A 43 308 43 HOH HOH . J 5 HOH A 44 309 44 HOH HOH . J 5 HOH A 45 310 45 HOH HOH . J 5 HOH A 46 311 46 HOH HOH . J 5 HOH A 47 312 47 HOH HOH . J 5 HOH A 48 313 48 HOH HOH . J 5 HOH A 49 314 49 HOH HOH . J 5 HOH A 50 315 50 HOH HOH . J 5 HOH A 51 316 51 HOH HOH . J 5 HOH A 52 317 52 HOH HOH . J 5 HOH A 53 318 53 HOH HOH . J 5 HOH A 54 319 54 HOH HOH . J 5 HOH A 55 320 55 HOH HOH . J 5 HOH A 56 321 56 HOH HOH . J 5 HOH A 57 322 57 HOH HOH . J 5 HOH A 58 323 58 HOH HOH . J 5 HOH A 59 324 59 HOH HOH . J 5 HOH A 60 325 60 HOH HOH . J 5 HOH A 61 326 61 HOH HOH . J 5 HOH A 62 327 62 HOH HOH . J 5 HOH A 63 328 63 HOH HOH . J 5 HOH A 64 329 64 HOH HOH . J 5 HOH A 65 330 65 HOH HOH . J 5 HOH A 66 331 66 HOH HOH . J 5 HOH A 67 332 67 HOH HOH . J 5 HOH A 68 333 68 HOH HOH . J 5 HOH A 69 334 69 HOH HOH . J 5 HOH A 70 335 70 HOH HOH . J 5 HOH A 71 336 71 HOH HOH . J 5 HOH A 72 337 72 HOH HOH . J 5 HOH A 73 338 73 HOH HOH . J 5 HOH A 74 339 74 HOH HOH . J 5 HOH A 75 340 75 HOH HOH . J 5 HOH A 76 341 76 HOH HOH . J 5 HOH A 77 342 77 HOH HOH . J 5 HOH A 78 343 78 HOH HOH . J 5 HOH A 79 344 79 HOH HOH . J 5 HOH A 80 345 80 HOH HOH . J 5 HOH A 81 346 81 HOH HOH . J 5 HOH A 82 347 82 HOH HOH . J 5 HOH A 83 348 83 HOH HOH . J 5 HOH A 84 349 84 HOH HOH . J 5 HOH A 85 350 85 HOH HOH . J 5 HOH A 86 351 86 HOH HOH . J 5 HOH A 87 352 87 HOH HOH . J 5 HOH A 88 353 88 HOH HOH . J 5 HOH A 89 354 89 HOH HOH . J 5 HOH A 90 355 90 HOH HOH . J 5 HOH A 91 356 91 HOH HOH . J 5 HOH A 92 357 92 HOH HOH . J 5 HOH A 93 358 93 HOH HOH . J 5 HOH A 94 359 94 HOH HOH . J 5 HOH A 95 360 95 HOH HOH . J 5 HOH A 96 361 96 HOH HOH . J 5 HOH A 97 362 97 HOH HOH . J 5 HOH A 98 363 98 HOH HOH . J 5 HOH A 99 364 99 HOH HOH . J 5 HOH A 100 365 100 HOH HOH . J 5 HOH A 101 366 101 HOH HOH . J 5 HOH A 102 367 102 HOH HOH . J 5 HOH A 103 368 103 HOH HOH . J 5 HOH A 104 369 104 HOH HOH . J 5 HOH A 105 370 105 HOH HOH . J 5 HOH A 106 371 106 HOH HOH . J 5 HOH A 107 372 107 HOH HOH . J 5 HOH A 108 373 108 HOH HOH . J 5 HOH A 109 374 109 HOH HOH . J 5 HOH A 110 375 110 HOH HOH . J 5 HOH A 111 376 111 HOH HOH . J 5 HOH A 112 377 112 HOH HOH . J 5 HOH A 113 378 113 HOH HOH . J 5 HOH A 114 379 114 HOH HOH . J 5 HOH A 115 380 115 HOH HOH . J 5 HOH A 116 381 116 HOH HOH . J 5 HOH A 117 382 117 HOH HOH . J 5 HOH A 118 383 118 HOH HOH . J 5 HOH A 119 384 119 HOH HOH . J 5 HOH A 120 385 120 HOH HOH . J 5 HOH A 121 386 121 HOH HOH . J 5 HOH A 122 387 122 HOH HOH . J 5 HOH A 123 388 123 HOH HOH . J 5 HOH A 124 389 124 HOH HOH . J 5 HOH A 125 390 125 HOH HOH . J 5 HOH A 126 391 126 HOH HOH . J 5 HOH A 127 392 127 HOH HOH . J 5 HOH A 128 393 128 HOH HOH . J 5 HOH A 129 394 129 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . F 4 -8.22 30.173 20.612 1 54.44 ? C1 GOL 262 A 1 HETATM 2 O O1 GOL . . . F 4 -9.297 30.818 21.255 1 57.91 ? O1 GOL 262 A 1 HETATM 3 C C2 GOL . . . F 4 -8.687 28.834 20.058 1 48.67 ? C2 GOL 262 A 1 HETATM 4 O O2 GOL . . . F 4 -7.631 28.193 19.369 1 58.58 ? O2 GOL 262 A 1 HETATM 5 C C3 GOL . . . F 4 -9.9 29.021 19.152 0.9 53.93 ? C3 GOL 262 A 1 HETATM 6 O O3 GOL . . . F 4 -10.019 27.917 18.276 0.82 50.44 ? O3 GOL 262 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 305 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 6 #