data_3PF4 # _model_server_result.job_id O7vBuvnrU4lvvC0t1BEBjg _model_server_result.datetime_utc '2024-12-22 06:13:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3pf4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":68}' # _entry.id 3PF4 # _exptl.entry_id 3PF4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3PF4 _cell.length_a 49.275 _cell.length_b 50.512 _cell.length_c 57.802 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3PF4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,E,F 1 1 B,C,G,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O GLY 35 A GLY 35 1_555 D NA NA . A NA 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.079 ? metalc ? metalc2 A O GLY 37 A GLY 37 1_555 D NA NA . A NA 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.619 ? metalc ? metalc3 E MG MG . A MG 69 1_555 F O HOH . A HOH 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.177 ? metalc ? metalc4 E MG MG . A MG 69 1_555 F O HOH . A HOH 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.995 ? metalc ? metalc5 E MG MG . A MG 69 1_555 F O HOH . A HOH 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? metalc ? metalc6 E MG MG . A MG 69 1_555 F O HOH . A HOH 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? metalc ? metalc7 E MG MG . A MG 69 1_555 F O HOH . A HOH 131 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.18 ? metalc ? metalc8 E MG MG . A MG 69 1_555 F O HOH . A HOH 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.986 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3PF4 _atom_sites.fract_transf_matrix[1][1] 0.020294 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019797 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.0173 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 3 NA A 1 68 1 NA NA . E 4 MG A 1 69 1 MG MG . F 5 HOH A 1 70 70 HOH HOH . F 5 HOH A 2 71 1 HOH HOH . F 5 HOH A 3 72 72 HOH HOH . F 5 HOH A 4 73 3 HOH HOH . F 5 HOH A 5 74 74 HOH HOH . F 5 HOH A 6 75 8 HOH HOH . F 5 HOH A 7 76 14 HOH HOH . F 5 HOH A 8 77 15 HOH HOH . F 5 HOH A 9 78 78 HOH HOH . F 5 HOH A 10 79 16 HOH HOH . F 5 HOH A 11 80 80 HOH HOH . F 5 HOH A 12 81 81 HOH HOH . F 5 HOH A 13 82 23 HOH HOH . F 5 HOH A 14 83 25 HOH HOH . F 5 HOH A 15 84 84 HOH HOH . F 5 HOH A 16 85 85 HOH HOH . F 5 HOH A 17 86 30 HOH HOH . F 5 HOH A 18 87 33 HOH HOH . F 5 HOH A 19 88 88 HOH HOH . F 5 HOH A 20 89 89 HOH HOH . F 5 HOH A 21 90 34 HOH HOH . F 5 HOH A 22 91 91 HOH HOH . F 5 HOH A 23 92 92 HOH HOH . F 5 HOH A 24 93 93 HOH HOH . F 5 HOH A 25 94 94 HOH HOH . F 5 HOH A 26 95 35 HOH HOH . F 5 HOH A 27 96 96 HOH HOH . F 5 HOH A 28 97 36 HOH HOH . F 5 HOH A 29 98 37 HOH HOH . F 5 HOH A 30 99 99 HOH HOH . F 5 HOH A 31 100 100 HOH HOH . F 5 HOH A 32 101 38 HOH HOH . F 5 HOH A 33 102 102 HOH HOH . F 5 HOH A 34 103 43 HOH HOH . F 5 HOH A 35 104 45 HOH HOH . F 5 HOH A 36 105 47 HOH HOH . F 5 HOH A 37 106 106 HOH HOH . F 5 HOH A 38 107 51 HOH HOH . F 5 HOH A 39 108 52 HOH HOH . F 5 HOH A 40 109 55 HOH HOH . F 5 HOH A 41 110 110 HOH HOH . F 5 HOH A 42 111 57 HOH HOH . F 5 HOH A 43 112 59 HOH HOH . F 5 HOH A 44 113 65 HOH HOH . F 5 HOH A 45 114 68 HOH HOH . F 5 HOH A 46 115 115 HOH HOH . F 5 HOH A 47 117 117 HOH HOH . F 5 HOH A 48 121 121 HOH HOH . F 5 HOH A 49 122 122 HOH HOH . F 5 HOH A 50 123 123 HOH HOH . F 5 HOH A 51 126 126 HOH HOH . F 5 HOH A 52 127 127 HOH HOH . F 5 HOH A 53 130 130 HOH HOH . F 5 HOH A 54 131 131 HOH HOH . F 5 HOH A 55 136 136 HOH HOH . F 5 HOH A 56 140 140 HOH HOH . F 5 HOH A 57 143 143 HOH HOH . F 5 HOH A 58 151 151 HOH HOH . F 5 HOH A 59 160 160 HOH HOH . F 5 HOH A 60 168 168 HOH HOH . F 5 HOH A 61 174 174 HOH HOH . F 5 HOH A 62 176 176 HOH HOH . F 5 HOH A 63 178 178 HOH HOH . F 5 HOH A 64 184 184 HOH HOH . F 5 HOH A 65 185 185 HOH HOH . F 5 HOH A 66 186 186 HOH HOH . F 5 HOH A 67 188 188 HOH HOH . F 5 HOH A 68 189 189 HOH HOH . F 5 HOH A 69 190 190 HOH HOH . F 5 HOH A 70 191 191 HOH HOH . F 5 HOH A 71 193 193 HOH HOH . F 5 HOH A 72 194 194 HOH HOH . F 5 HOH A 73 195 195 HOH HOH . F 5 HOH A 74 196 196 HOH HOH . F 5 HOH A 75 197 197 HOH HOH . F 5 HOH A 76 198 198 HOH HOH . F 5 HOH A 77 200 200 HOH HOH . F 5 HOH A 78 203 203 HOH HOH . F 5 HOH A 79 209 209 HOH HOH . F 5 HOH A 80 215 215 HOH HOH . F 5 HOH A 81 217 217 HOH HOH . F 5 HOH A 82 218 218 HOH HOH . F 5 HOH A 83 221 221 HOH HOH . F 5 HOH A 84 223 223 HOH HOH . F 5 HOH A 85 224 224 HOH HOH . F 5 HOH A 86 230 230 HOH HOH . F 5 HOH A 87 231 231 HOH HOH . F 5 HOH A 88 233 233 HOH HOH . F 5 HOH A 89 235 235 HOH HOH . F 5 HOH A 90 236 236 HOH HOH . F 5 HOH A 91 237 237 HOH HOH . F 5 HOH A 92 238 238 HOH HOH . F 5 HOH A 93 239 239 HOH HOH . F 5 HOH A 94 240 240 HOH HOH . F 5 HOH A 95 241 241 HOH HOH . F 5 HOH A 96 253 253 HOH HOH . F 5 HOH A 97 257 257 HOH HOH . F 5 HOH A 98 258 258 HOH HOH . F 5 HOH A 99 259 259 HOH HOH . F 5 HOH A 100 261 261 HOH HOH . F 5 HOH A 101 263 263 HOH HOH . F 5 HOH A 102 264 264 HOH HOH . F 5 HOH A 103 265 265 HOH HOH . G 5 HOH B 1 68 2 HOH HOH . G 5 HOH B 2 69 69 HOH HOH . G 5 HOH B 3 70 4 HOH HOH . G 5 HOH B 4 71 5 HOH HOH . G 5 HOH B 5 72 6 HOH HOH . G 5 HOH B 6 73 7 HOH HOH . G 5 HOH B 7 74 9 HOH HOH . G 5 HOH B 8 75 75 HOH HOH . G 5 HOH B 9 76 10 HOH HOH . G 5 HOH B 10 77 77 HOH HOH . G 5 HOH B 11 78 11 HOH HOH . G 5 HOH B 12 79 79 HOH HOH . G 5 HOH B 13 80 12 HOH HOH . G 5 HOH B 14 81 13 HOH HOH . G 5 HOH B 15 82 82 HOH HOH . G 5 HOH B 16 83 83 HOH HOH . G 5 HOH B 17 84 17 HOH HOH . G 5 HOH B 18 85 18 HOH HOH . G 5 HOH B 19 86 86 HOH HOH . G 5 HOH B 20 87 19 HOH HOH . G 5 HOH B 21 88 20 HOH HOH . G 5 HOH B 22 89 21 HOH HOH . G 5 HOH B 23 90 22 HOH HOH . G 5 HOH B 24 91 24 HOH HOH . G 5 HOH B 25 92 26 HOH HOH . G 5 HOH B 26 93 28 HOH HOH . G 5 HOH B 27 94 29 HOH HOH . G 5 HOH B 28 95 95 HOH HOH . G 5 HOH B 29 96 32 HOH HOH . G 5 HOH B 30 97 97 HOH HOH . G 5 HOH B 31 98 39 HOH HOH . G 5 HOH B 32 99 40 HOH HOH . G 5 HOH B 33 100 42 HOH HOH . G 5 HOH B 34 101 101 HOH HOH . G 5 HOH B 35 102 44 HOH HOH . G 5 HOH B 36 103 46 HOH HOH . G 5 HOH B 37 104 49 HOH HOH . G 5 HOH B 38 105 54 HOH HOH . G 5 HOH B 39 106 56 HOH HOH . G 5 HOH B 40 107 107 HOH HOH . G 5 HOH B 41 108 108 HOH HOH . G 5 HOH B 42 109 109 HOH HOH . G 5 HOH B 43 110 58 HOH HOH . G 5 HOH B 44 111 60 HOH HOH . G 5 HOH B 45 112 62 HOH HOH . G 5 HOH B 46 113 113 HOH HOH . G 5 HOH B 47 114 63 HOH HOH . G 5 HOH B 48 120 120 HOH HOH . G 5 HOH B 49 125 125 HOH HOH . G 5 HOH B 50 132 132 HOH HOH . G 5 HOH B 51 137 137 HOH HOH . G 5 HOH B 52 142 142 HOH HOH . G 5 HOH B 53 150 150 HOH HOH . G 5 HOH B 54 163 163 HOH HOH . G 5 HOH B 55 167 167 HOH HOH . G 5 HOH B 56 172 172 HOH HOH . G 5 HOH B 57 173 173 HOH HOH . G 5 HOH B 58 175 175 HOH HOH . G 5 HOH B 59 182 182 HOH HOH . G 5 HOH B 60 192 192 HOH HOH . G 5 HOH B 61 199 199 HOH HOH . G 5 HOH B 62 201 201 HOH HOH . G 5 HOH B 63 202 202 HOH HOH . G 5 HOH B 64 204 204 HOH HOH . G 5 HOH B 65 211 211 HOH HOH . G 5 HOH B 66 212 212 HOH HOH . G 5 HOH B 67 213 213 HOH HOH . G 5 HOH B 68 216 216 HOH HOH . G 5 HOH B 69 219 219 HOH HOH . G 5 HOH B 70 226 226 HOH HOH . G 5 HOH B 71 227 227 HOH HOH . G 5 HOH B 72 229 229 HOH HOH . G 5 HOH B 73 232 232 HOH HOH . G 5 HOH B 74 234 234 HOH HOH . G 5 HOH B 75 242 242 HOH HOH . G 5 HOH B 76 243 243 HOH HOH . G 5 HOH B 77 244 244 HOH HOH . G 5 HOH B 78 245 245 HOH HOH . G 5 HOH B 79 246 246 HOH HOH . G 5 HOH B 80 247 247 HOH HOH . G 5 HOH B 81 248 248 HOH HOH . G 5 HOH B 82 249 249 HOH HOH . G 5 HOH B 83 251 251 HOH HOH . G 5 HOH B 84 252 252 HOH HOH . G 5 HOH B 85 260 260 HOH HOH . G 5 HOH B 86 262 262 HOH HOH . H 5 HOH R 1 87 87 HOH HOH . H 5 HOH R 2 161 161 HOH HOH . H 5 HOH R 3 187 187 HOH HOH . H 5 HOH R 4 254 254 HOH HOH . H 5 HOH R 5 255 255 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 3 _atom_site.Cartn_x 5.948 _atom_site.Cartn_y 4.45 _atom_site.Cartn_z -1.124 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 38.69 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 68 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 272 _model_server_stats.encode_time_ms 19 _model_server_stats.element_count 1 #