data_3PFG
#
_model_server_result.job_id            -bIQLLBo3dQQCI7pP45-Cg 
_model_server_result.datetime_utc      '2024-11-25 09:49:10' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3pfg 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":265}' 
#
_entry.id    3PFG 
#
_exptl.entry_id    3PFG 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          121.21 
_cell.angle_gamma         90 
_cell.entry_id            3PFG 
_cell.length_a            88.079 
_cell.length_b            41.382 
_cell.length_c            86.637 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3PFG 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_556 -x,y,-z+1 -1 0 0 0 1 0 0 0 -1 -44.893239 0 74.098359 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 83 n n 
C1 C2 EDO sing 84 n n 
C1 H11 EDO sing 85 n n 
C1 H12 EDO sing 86 n n 
O1 HO1 EDO sing 87 n n 
C2 O2 EDO sing 88 n n 
C2 H21 EDO sing 89 n n 
C2 H22 EDO sing 90 n n 
O2 HO2 EDO sing 91 n n 
#
_atom_sites.entry_id                     3PFG 
_atom_sites.fract_transf_matrix[1][1]    0.011353 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.006879 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.024165 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.013496 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 SAM A 1 264 1 SAM SAM . 
C 3 EDO A 1 265 1 EDO EDO . 
D 4 TLO A 1 301 301 TLO TLO . 
E 5 HOH A 1 266 266 HOH HOH . 
E 5 HOH A 2 267 267 HOH HOH . 
E 5 HOH A 3 268 268 HOH HOH . 
E 5 HOH A 4 269 269 HOH HOH . 
E 5 HOH A 5 270 270 HOH HOH . 
E 5 HOH A 6 271 1 HOH HOH . 
E 5 HOH A 7 272 272 HOH HOH . 
E 5 HOH A 8 273 273 HOH HOH . 
E 5 HOH A 9 274 274 HOH HOH . 
E 5 HOH A 10 275 275 HOH HOH . 
E 5 HOH A 11 276 276 HOH HOH . 
E 5 HOH A 12 277 277 HOH HOH . 
E 5 HOH A 13 278 278 HOH HOH . 
E 5 HOH A 14 279 279 HOH HOH . 
E 5 HOH A 15 280 280 HOH HOH . 
E 5 HOH A 16 281 281 HOH HOH . 
E 5 HOH A 17 282 282 HOH HOH . 
E 5 HOH A 18 283 283 HOH HOH . 
E 5 HOH A 19 284 284 HOH HOH . 
E 5 HOH A 20 285 285 HOH HOH . 
E 5 HOH A 21 286 286 HOH HOH . 
E 5 HOH A 22 287 287 HOH HOH . 
E 5 HOH A 23 288 288 HOH HOH . 
E 5 HOH A 24 289 289 HOH HOH . 
E 5 HOH A 25 290 2 HOH HOH . 
E 5 HOH A 26 291 291 HOH HOH . 
E 5 HOH A 27 292 292 HOH HOH . 
E 5 HOH A 28 293 3 HOH HOH . 
E 5 HOH A 29 294 294 HOH HOH . 
E 5 HOH A 30 295 295 HOH HOH . 
E 5 HOH A 31 296 296 HOH HOH . 
E 5 HOH A 32 297 4 HOH HOH . 
E 5 HOH A 33 298 298 HOH HOH . 
E 5 HOH A 34 299 299 HOH HOH . 
E 5 HOH A 35 300 300 HOH HOH . 
E 5 HOH A 36 302 302 HOH HOH . 
E 5 HOH A 37 303 303 HOH HOH . 
E 5 HOH A 38 304 304 HOH HOH . 
E 5 HOH A 39 305 305 HOH HOH . 
E 5 HOH A 40 306 306 HOH HOH . 
E 5 HOH A 41 307 307 HOH HOH . 
E 5 HOH A 42 308 308 HOH HOH . 
E 5 HOH A 43 309 309 HOH HOH . 
E 5 HOH A 44 310 310 HOH HOH . 
E 5 HOH A 45 311 311 HOH HOH . 
E 5 HOH A 46 312 312 HOH HOH . 
E 5 HOH A 47 313 5 HOH HOH . 
E 5 HOH A 48 314 314 HOH HOH . 
E 5 HOH A 49 315 315 HOH HOH . 
E 5 HOH A 50 316 316 HOH HOH . 
E 5 HOH A 51 317 317 HOH HOH . 
E 5 HOH A 52 318 318 HOH HOH . 
E 5 HOH A 53 319 319 HOH HOH . 
E 5 HOH A 54 320 6 HOH HOH . 
E 5 HOH A 55 321 7 HOH HOH . 
E 5 HOH A 56 322 8 HOH HOH . 
E 5 HOH A 57 323 9 HOH HOH . 
E 5 HOH A 58 324 10 HOH HOH . 
E 5 HOH A 59 325 11 HOH HOH . 
E 5 HOH A 60 326 12 HOH HOH . 
E 5 HOH A 61 327 13 HOH HOH . 
E 5 HOH A 62 328 14 HOH HOH . 
E 5 HOH A 63 329 15 HOH HOH . 
E 5 HOH A 64 330 16 HOH HOH . 
E 5 HOH A 65 331 17 HOH HOH . 
E 5 HOH A 66 332 18 HOH HOH . 
E 5 HOH A 67 333 19 HOH HOH . 
E 5 HOH A 68 334 21 HOH HOH . 
E 5 HOH A 69 335 22 HOH HOH . 
E 5 HOH A 70 336 23 HOH HOH . 
E 5 HOH A 71 337 24 HOH HOH . 
E 5 HOH A 72 338 26 HOH HOH . 
E 5 HOH A 73 339 28 HOH HOH . 
E 5 HOH A 74 340 29 HOH HOH . 
E 5 HOH A 75 341 30 HOH HOH . 
E 5 HOH A 76 342 31 HOH HOH . 
E 5 HOH A 77 343 32 HOH HOH . 
E 5 HOH A 78 344 33 HOH HOH . 
E 5 HOH A 79 345 34 HOH HOH . 
E 5 HOH A 80 346 35 HOH HOH . 
E 5 HOH A 81 347 36 HOH HOH . 
E 5 HOH A 82 348 37 HOH HOH . 
E 5 HOH A 83 349 38 HOH HOH . 
E 5 HOH A 84 350 39 HOH HOH . 
E 5 HOH A 85 351 40 HOH HOH . 
E 5 HOH A 86 352 41 HOH HOH . 
E 5 HOH A 87 353 42 HOH HOH . 
E 5 HOH A 88 354 43 HOH HOH . 
E 5 HOH A 89 355 44 HOH HOH . 
E 5 HOH A 90 356 45 HOH HOH . 
E 5 HOH A 91 357 46 HOH HOH . 
E 5 HOH A 92 358 47 HOH HOH . 
E 5 HOH A 93 359 48 HOH HOH . 
E 5 HOH A 94 360 49 HOH HOH . 
E 5 HOH A 95 361 50 HOH HOH . 
E 5 HOH A 96 362 51 HOH HOH . 
E 5 HOH A 97 363 52 HOH HOH . 
E 5 HOH A 98 364 53 HOH HOH . 
E 5 HOH A 99 365 54 HOH HOH . 
E 5 HOH A 100 366 55 HOH HOH . 
E 5 HOH A 101 367 56 HOH HOH . 
E 5 HOH A 102 368 57 HOH HOH . 
E 5 HOH A 103 369 58 HOH HOH . 
E 5 HOH A 104 370 59 HOH HOH . 
E 5 HOH A 105 371 60 HOH HOH . 
E 5 HOH A 106 372 61 HOH HOH . 
E 5 HOH A 107 373 62 HOH HOH . 
E 5 HOH A 108 374 63 HOH HOH . 
E 5 HOH A 109 375 64 HOH HOH . 
E 5 HOH A 110 376 65 HOH HOH . 
E 5 HOH A 111 377 66 HOH HOH . 
E 5 HOH A 112 378 67 HOH HOH . 
E 5 HOH A 113 379 68 HOH HOH . 
E 5 HOH A 114 380 69 HOH HOH . 
E 5 HOH A 115 381 70 HOH HOH . 
E 5 HOH A 116 382 71 HOH HOH . 
E 5 HOH A 117 383 72 HOH HOH . 
E 5 HOH A 118 384 73 HOH HOH . 
E 5 HOH A 119 385 74 HOH HOH . 
E 5 HOH A 120 386 75 HOH HOH . 
E 5 HOH A 121 387 76 HOH HOH . 
E 5 HOH A 122 388 77 HOH HOH . 
E 5 HOH A 123 389 78 HOH HOH . 
E 5 HOH A 124 390 79 HOH HOH . 
E 5 HOH A 125 391 80 HOH HOH . 
E 5 HOH A 126 392 81 HOH HOH . 
E 5 HOH A 127 393 82 HOH HOH . 
E 5 HOH A 128 394 83 HOH HOH . 
E 5 HOH A 129 395 84 HOH HOH . 
E 5 HOH A 130 396 85 HOH HOH . 
E 5 HOH A 131 397 86 HOH HOH . 
E 5 HOH A 132 398 87 HOH HOH . 
E 5 HOH A 133 399 88 HOH HOH . 
E 5 HOH A 134 400 89 HOH HOH . 
E 5 HOH A 135 401 90 HOH HOH . 
E 5 HOH A 136 402 91 HOH HOH . 
E 5 HOH A 137 403 92 HOH HOH . 
E 5 HOH A 138 404 93 HOH HOH . 
E 5 HOH A 139 405 94 HOH HOH . 
E 5 HOH A 140 406 95 HOH HOH . 
E 5 HOH A 141 407 96 HOH HOH . 
E 5 HOH A 142 408 97 HOH HOH . 
E 5 HOH A 143 409 98 HOH HOH . 
E 5 HOH A 144 410 100 HOH HOH . 
E 5 HOH A 145 411 101 HOH HOH . 
E 5 HOH A 146 412 102 HOH HOH . 
E 5 HOH A 147 413 104 HOH HOH . 
E 5 HOH A 148 414 105 HOH HOH . 
E 5 HOH A 149 415 106 HOH HOH . 
E 5 HOH A 150 416 108 HOH HOH . 
E 5 HOH A 151 417 109 HOH HOH . 
E 5 HOH A 152 418 110 HOH HOH . 
E 5 HOH A 153 419 111 HOH HOH . 
E 5 HOH A 154 420 112 HOH HOH . 
E 5 HOH A 155 421 113 HOH HOH . 
E 5 HOH A 156 422 114 HOH HOH . 
E 5 HOH A 157 423 115 HOH HOH . 
E 5 HOH A 158 424 116 HOH HOH . 
E 5 HOH A 159 425 117 HOH HOH . 
E 5 HOH A 160 426 118 HOH HOH . 
E 5 HOH A 161 427 119 HOH HOH . 
E 5 HOH A 162 428 120 HOH HOH . 
E 5 HOH A 163 429 121 HOH HOH . 
E 5 HOH A 164 430 122 HOH HOH . 
E 5 HOH A 165 431 123 HOH HOH . 
E 5 HOH A 166 432 124 HOH HOH . 
E 5 HOH A 167 433 125 HOH HOH . 
E 5 HOH A 168 434 126 HOH HOH . 
E 5 HOH A 169 435 127 HOH HOH . 
E 5 HOH A 170 436 128 HOH HOH . 
E 5 HOH A 171 437 129 HOH HOH . 
E 5 HOH A 172 438 130 HOH HOH . 
E 5 HOH A 173 439 131 HOH HOH . 
E 5 HOH A 174 440 132 HOH HOH . 
E 5 HOH A 175 441 133 HOH HOH . 
E 5 HOH A 176 442 134 HOH HOH . 
E 5 HOH A 177 443 135 HOH HOH . 
E 5 HOH A 178 444 136 HOH HOH . 
E 5 HOH A 179 445 137 HOH HOH . 
E 5 HOH A 180 446 138 HOH HOH . 
E 5 HOH A 181 447 139 HOH HOH . 
E 5 HOH A 182 448 140 HOH HOH . 
E 5 HOH A 183 449 141 HOH HOH . 
E 5 HOH A 184 450 142 HOH HOH . 
E 5 HOH A 185 451 143 HOH HOH . 
E 5 HOH A 186 452 144 HOH HOH . 
E 5 HOH A 187 453 145 HOH HOH . 
E 5 HOH A 188 454 146 HOH HOH . 
E 5 HOH A 189 455 147 HOH HOH . 
E 5 HOH A 190 456 148 HOH HOH . 
E 5 HOH A 191 457 149 HOH HOH . 
E 5 HOH A 192 458 150 HOH HOH . 
E 5 HOH A 193 459 151 HOH HOH . 
E 5 HOH A 194 460 152 HOH HOH . 
E 5 HOH A 195 461 153 HOH HOH . 
E 5 HOH A 196 462 154 HOH HOH . 
E 5 HOH A 197 463 155 HOH HOH . 
E 5 HOH A 198 464 157 HOH HOH . 
E 5 HOH A 199 465 158 HOH HOH . 
E 5 HOH A 200 466 159 HOH HOH . 
E 5 HOH A 201 467 160 HOH HOH . 
E 5 HOH A 202 468 161 HOH HOH . 
E 5 HOH A 203 469 162 HOH HOH . 
E 5 HOH A 204 470 163 HOH HOH . 
E 5 HOH A 205 471 166 HOH HOH . 
E 5 HOH A 206 472 167 HOH HOH . 
E 5 HOH A 207 473 168 HOH HOH . 
E 5 HOH A 208 474 169 HOH HOH . 
E 5 HOH A 209 475 172 HOH HOH . 
E 5 HOH A 210 476 173 HOH HOH . 
E 5 HOH A 211 477 174 HOH HOH . 
E 5 HOH A 212 478 175 HOH HOH . 
E 5 HOH A 213 479 176 HOH HOH . 
E 5 HOH A 214 480 177 HOH HOH . 
E 5 HOH A 215 481 183 HOH HOH . 
E 5 HOH A 216 482 184 HOH HOH . 
E 5 HOH A 217 483 185 HOH HOH . 
E 5 HOH A 218 484 186 HOH HOH . 
E 5 HOH A 219 485 188 HOH HOH . 
E 5 HOH A 220 486 189 HOH HOH . 
E 5 HOH A 221 487 190 HOH HOH . 
E 5 HOH A 222 488 192 HOH HOH . 
E 5 HOH A 223 489 197 HOH HOH . 
E 5 HOH A 224 490 200 HOH HOH . 
E 5 HOH A 225 491 212 HOH HOH . 
E 5 HOH A 226 492 217 HOH HOH . 
E 5 HOH A 227 493 218 HOH HOH . 
E 5 HOH A 228 494 219 HOH HOH . 
E 5 HOH A 229 495 220 HOH HOH . 
E 5 HOH A 230 496 221 HOH HOH . 
E 5 HOH A 231 497 222 HOH HOH . 
E 5 HOH A 232 498 223 HOH HOH . 
E 5 HOH A 233 499 225 HOH HOH . 
E 5 HOH A 234 500 226 HOH HOH . 
E 5 HOH A 235 501 227 HOH HOH . 
E 5 HOH A 236 502 228 HOH HOH . 
E 5 HOH A 237 503 229 HOH HOH . 
E 5 HOH A 238 504 230 HOH HOH . 
E 5 HOH A 239 505 231 HOH HOH . 
E 5 HOH A 240 506 233 HOH HOH . 
E 5 HOH A 241 507 235 HOH HOH . 
E 5 HOH A 242 508 236 HOH HOH . 
E 5 HOH A 243 509 237 HOH HOH . 
E 5 HOH A 244 510 238 HOH HOH . 
E 5 HOH A 245 511 239 HOH HOH . 
E 5 HOH A 246 512 240 HOH HOH . 
E 5 HOH A 247 513 241 HOH HOH . 
E 5 HOH A 248 514 242 HOH HOH . 
E 5 HOH A 249 515 243 HOH HOH . 
E 5 HOH A 250 516 244 HOH HOH . 
E 5 HOH A 251 517 245 HOH HOH . 
E 5 HOH A 252 518 246 HOH HOH . 
E 5 HOH A 253 519 247 HOH HOH . 
E 5 HOH A 254 520 248 HOH HOH . 
E 5 HOH A 255 521 249 HOH HOH . 
E 5 HOH A 256 522 250 HOH HOH . 
E 5 HOH A 257 523 251 HOH HOH . 
E 5 HOH A 258 524 252 HOH HOH . 
E 5 HOH A 259 525 253 HOH HOH . 
E 5 HOH A 260 526 254 HOH HOH . 
E 5 HOH A 261 527 255 HOH HOH . 
E 5 HOH A 262 528 256 HOH HOH . 
E 5 HOH A 263 529 257 HOH HOH . 
E 5 HOH A 264 530 258 HOH HOH . 
E 5 HOH A 265 531 259 HOH HOH . 
E 5 HOH A 266 532 260 HOH HOH . 
E 5 HOH A 267 533 261 HOH HOH . 
E 5 HOH A 268 534 262 HOH HOH . 
E 5 HOH A 269 535 263 HOH HOH . 
E 5 HOH A 270 536 264 HOH HOH . 
E 5 HOH A 271 537 265 HOH HOH . 
E 5 HOH A 272 538 301 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . C 3 -9.627 -3.396 28.057 1 13.36 ? C1 EDO 265 A 1 
HETATM 2 O O1 EDO . . . C 3 -10.472 -3.331 29.219 1 13.18 ? O1 EDO 265 A 1 
HETATM 3 C C2 EDO . . . C 3 -9.708 -2.035 27.367 1 12.86 ? C2 EDO 265 A 1 
HETATM 4 O O2 EDO . . . C 3 -11.027 -1.894 26.834 1 11.76 ? O2 EDO 265 A 1 
#
_model_server_stats.io_time_ms              6 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    12 
_model_server_stats.query_time_ms           287 
_model_server_stats.encode_time_ms          8 
_model_server_stats.element_count           4 
#