data_3PFQ # _model_server_result.job_id F2f5SjJ3pUrkFVep0VEPVA _model_server_result.datetime_utc '2024-11-19 17:36:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3pfq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":750}' # _entry.id 3PFQ # _exptl.entry_id 3PFQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3PFQ _cell.length_a 114.27 _cell.length_b 114.27 _cell.length_c 170.84 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3PFQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C LYS 500 A LYS 499 1_555 A N TPO 501 A TPO 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale2 A C TPO 501 A TPO 500 1_555 A N PHE 502 A PHE 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale3 A C LEU 641 A LEU 640 1_555 A N TPO 642 A TPO 641 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale4 A C TPO 642 A TPO 641 1_555 A N PRO 643 A PRO 642 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.343 ? covale ? covale5 A C PHE 660 A PHE 659 1_555 A N SEP 661 A SEP 660 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale6 A C SEP 661 A SEP 660 1_555 A N PHE 662 A PHE 661 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? metalc ? metalc1 A SG CYS 116 A CYS 115 1_555 F ZN ZN . A ZN 751 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.772 ? metalc ? metalc2 A SG CYS 136 A CYS 135 1_555 E ZN ZN . A ZN 750 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.661 ? metalc ? metalc3 A ND1 HIS 141 A HIS 140 1_555 F ZN ZN . A ZN 751 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.575 ? metalc ? metalc4 A O MET 187 A MET 186 1_555 C CA CA . A CA 675 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.952 ? metalc ? metalc5 A OD2 ASP 188 A ASP 187 1_555 B CA CA . A CA 674 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.96 ? metalc ? metalc6 A OD1 ASP 188 A ASP 187 1_555 B CA CA . A CA 674 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.149 ? metalc ? metalc7 A OD1 ASP 194 A ASP 193 1_555 B CA CA . A CA 674 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.07 ? metalc ? metalc8 A OD2 ASP 247 A ASP 246 1_555 B CA CA . A CA 674 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.137 ? metalc ? metalc9 A OD2 ASP 247 A ASP 246 1_555 C CA CA . A CA 675 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.872 ? metalc ? metalc10 A O TRP 248 A TRP 247 1_555 B CA CA . A CA 674 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.796 ? metalc ? metalc11 A OD2 ASP 249 A ASP 248 1_555 C CA CA . A CA 675 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.795 ? metalc ? metalc12 A OD1 ASP 249 A ASP 248 1_555 C CA CA . A CA 675 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.946 ? metalc ? metalc13 A OD2 ASP 249 A ASP 248 1_555 D CA CA . A CA 676 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.076 ? metalc ? metalc14 A OG SER 252 A SER 251 1_555 D CA CA . A CA 676 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.084 ? metalc ? metalc15 A O ARG 253 A ARG 252 1_555 D CA CA . A CA 676 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.846 ? metalc ? metalc16 A OD2 ASP 255 A ASP 254 1_555 C CA CA . A CA 675 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.946 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3PFQ _atom_sites.fract_transf_matrix[1][1] 0.008751 _atom_sites.fract_transf_matrix[1][2] 0.005053 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010105 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005853 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA A 1 674 293 CA CA . C 2 CA A 1 675 294 CA CA . D 2 CA A 1 676 295 CA CA . E 3 ZN A 1 750 750 ZN ZN . F 3 ZN A 1 751 751 ZN ZN . G 4 ANP A 1 800 800 ANP ANP . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 3 _atom_site.Cartn_x -67.754 _atom_site.Cartn_y 1.092 _atom_site.Cartn_z -18.748 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 113.3 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 750 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 314 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 1 #