data_3PFV # _model_server_result.job_id DQ3YULds8W40Gce0NhmNGA _model_server_result.datetime_utc '2024-11-17 03:30:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3pfv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":352}' # _entry.id 3PFV # _exptl.entry_id 3PFV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 96.063 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SULFATE ION' _entity.pdbx_number_of_molecules 7 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 110.63 _cell.angle_gamma 90 _cell.entry_id 3PFV _cell.length_a 60.063 _cell.length_b 98.934 _cell.length_c 61.978 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3PFV _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 software_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E,F,G,H,I,J,K,L,M,N,T,V 1 1 B,D,O,P,Q,R,S,U,W 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 H N N ? 5 I N N ? 5 J N N ? 5 K N N ? 5 P N N ? 5 Q N N ? 5 R N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 C C ARG 3 C ARG 1068 1_555 C N PTR 4 C PTR 1069 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale2 C C PTR 4 C PTR 1069 1_555 C N SER 5 C SER 1070 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale3 D C ARG 3 D ARG 1068 1_555 D N PTR 4 D PTR 1069 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale4 D C PTR 4 D PTR 1069 1_555 D N SER 5 D SER 1070 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? metalc ? metalc1 E NA NA . A NA 1 1_555 A OD1 ASP 185 A ASP 221 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.488 ? metalc ? metalc2 E NA NA . A NA 1 1_555 A OG1 THR 187 A THR 223 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.608 ? metalc ? metalc3 E NA NA . A NA 1 1_555 A OD1 ASN 189 A ASN 225 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.453 ? metalc ? metalc4 E NA NA . A NA 1 1_555 A O TYR 191 A TYR 227 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.349 ? metalc ? metalc5 E NA NA . A NA 1 1_555 A OE1 GLU 196 A GLU 232 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.367 ? metalc ? metalc6 E NA NA . A NA 1 1_555 T O HOH . A HOH 432 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.906 ? metalc ? metalc7 O NA NA . B NA 2 1_555 B OD1 ASP 185 B ASP 221 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.425 ? metalc ? metalc8 O NA NA . B NA 2 1_555 B OG1 THR 187 B THR 223 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.682 ? metalc ? metalc9 O NA NA . B NA 2 1_555 B OD1 ASN 189 B ASN 225 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.379 ? metalc ? metalc10 O NA NA . B NA 2 1_555 B O TYR 191 B TYR 227 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.197 ? metalc ? metalc11 O NA NA . B NA 2 1_555 B OE2 GLU 196 B GLU 232 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.367 ? metalc ? metalc12 O NA NA . B NA 2 1_555 U O HOH . B HOH 388 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.886 ? # _chem_comp.formula 'O4 S -2' _chem_comp.formula_weight 96.063 _chem_comp.id SO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'SULFATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O1 SO4 doub 358 n n S O2 SO4 doub 359 n n S O3 SO4 sing 360 n n S O4 SO4 sing 361 n n # _atom_sites.entry_id 3PFV _atom_sites.fract_transf_matrix[1][1] 0.016649 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.006269 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010108 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017241 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 NA A 1 1 1 NA NA . F 4 CL A 1 3 3 CL CL . G 4 CL A 1 4 4 CL CL . H 5 SO4 A 1 2 2 SO4 SO4 . I 5 SO4 A 1 352 4 SO4 SO4 . J 5 SO4 A 1 6 6 SO4 SO4 . K 5 SO4 A 1 7 7 SO4 SO4 . L 6 EDO A 1 8 8 EDO EDO . M 6 EDO A 1 9 9 EDO EDO . N 6 EDO A 1 10 10 EDO EDO . O 3 NA B 1 2 2 NA NA . P 5 SO4 B 1 1 1 SO4 SO4 . Q 5 SO4 B 1 3 3 SO4 SO4 . R 5 SO4 B 1 5 5 SO4 SO4 . S 7 PG4 B 1 11 11 PG4 PG4 . T 8 HOH A 1 5 5 HOH HOH . T 8 HOH A 2 12 12 HOH HOH . T 8 HOH A 3 13 13 HOH HOH . T 8 HOH A 4 15 15 HOH HOH . T 8 HOH A 5 16 16 HOH HOH . T 8 HOH A 6 20 20 HOH HOH . T 8 HOH A 7 22 22 HOH HOH . T 8 HOH A 8 23 23 HOH HOH . T 8 HOH A 9 24 24 HOH HOH . T 8 HOH A 10 29 29 HOH HOH . T 8 HOH A 11 33 33 HOH HOH . T 8 HOH A 12 35 35 HOH HOH . T 8 HOH A 13 353 1 HOH HOH . T 8 HOH A 14 354 4 HOH HOH . T 8 HOH A 15 355 38 HOH HOH . T 8 HOH A 16 356 40 HOH HOH . T 8 HOH A 17 357 42 HOH HOH . T 8 HOH A 18 358 43 HOH HOH . T 8 HOH A 19 359 45 HOH HOH . T 8 HOH A 20 360 46 HOH HOH . T 8 HOH A 21 361 48 HOH HOH . T 8 HOH A 22 362 49 HOH HOH . T 8 HOH A 23 363 52 HOH HOH . T 8 HOH A 24 364 53 HOH HOH . T 8 HOH A 25 365 55 HOH HOH . T 8 HOH A 26 366 69 HOH HOH . T 8 HOH A 27 367 70 HOH HOH . T 8 HOH A 28 368 72 HOH HOH . T 8 HOH A 29 369 75 HOH HOH . T 8 HOH A 30 370 78 HOH HOH . T 8 HOH A 31 371 80 HOH HOH . T 8 HOH A 32 372 81 HOH HOH . T 8 HOH A 33 373 82 HOH HOH . T 8 HOH A 34 374 83 HOH HOH . T 8 HOH A 35 375 85 HOH HOH . T 8 HOH A 36 376 86 HOH HOH . T 8 HOH A 37 377 87 HOH HOH . T 8 HOH A 38 378 92 HOH HOH . T 8 HOH A 39 379 99 HOH HOH . T 8 HOH A 40 380 100 HOH HOH . T 8 HOH A 41 381 101 HOH HOH . T 8 HOH A 42 382 102 HOH HOH . T 8 HOH A 43 383 108 HOH HOH . T 8 HOH A 44 384 109 HOH HOH . T 8 HOH A 45 385 110 HOH HOH . T 8 HOH A 46 386 111 HOH HOH . T 8 HOH A 47 387 114 HOH HOH . T 8 HOH A 48 388 118 HOH HOH . T 8 HOH A 49 389 124 HOH HOH . T 8 HOH A 50 390 125 HOH HOH . T 8 HOH A 51 391 127 HOH HOH . T 8 HOH A 52 392 128 HOH HOH . T 8 HOH A 53 393 129 HOH HOH . T 8 HOH A 54 394 130 HOH HOH . T 8 HOH A 55 395 131 HOH HOH . T 8 HOH A 56 396 136 HOH HOH . T 8 HOH A 57 397 137 HOH HOH . T 8 HOH A 58 398 138 HOH HOH . T 8 HOH A 59 399 142 HOH HOH . T 8 HOH A 60 400 143 HOH HOH . T 8 HOH A 61 401 145 HOH HOH . T 8 HOH A 62 402 146 HOH HOH . T 8 HOH A 63 403 153 HOH HOH . T 8 HOH A 64 404 155 HOH HOH . T 8 HOH A 65 405 157 HOH HOH . T 8 HOH A 66 406 159 HOH HOH . T 8 HOH A 67 407 160 HOH HOH . T 8 HOH A 68 408 161 HOH HOH . T 8 HOH A 69 409 162 HOH HOH . T 8 HOH A 70 410 163 HOH HOH . T 8 HOH A 71 411 164 HOH HOH . T 8 HOH A 72 412 168 HOH HOH . T 8 HOH A 73 413 169 HOH HOH . T 8 HOH A 74 414 172 HOH HOH . T 8 HOH A 75 415 176 HOH HOH . T 8 HOH A 76 416 177 HOH HOH . T 8 HOH A 77 417 178 HOH HOH . T 8 HOH A 78 418 179 HOH HOH . T 8 HOH A 79 419 180 HOH HOH . T 8 HOH A 80 420 182 HOH HOH . T 8 HOH A 81 421 183 HOH HOH . T 8 HOH A 82 422 184 HOH HOH . T 8 HOH A 83 423 185 HOH HOH . T 8 HOH A 84 424 186 HOH HOH . T 8 HOH A 85 425 187 HOH HOH . T 8 HOH A 86 426 188 HOH HOH . T 8 HOH A 87 427 113 HOH HOH . T 8 HOH A 88 428 190 HOH HOH . T 8 HOH A 89 429 191 HOH HOH . T 8 HOH A 90 430 194 HOH HOH . T 8 HOH A 91 431 196 HOH HOH . T 8 HOH A 92 432 197 HOH HOH . T 8 HOH A 93 433 198 HOH HOH . T 8 HOH A 94 434 199 HOH HOH . T 8 HOH A 95 435 200 HOH HOH . T 8 HOH A 96 436 225 HOH HOH . T 8 HOH A 97 437 226 HOH HOH . T 8 HOH A 98 438 227 HOH HOH . T 8 HOH A 99 439 230 HOH HOH . T 8 HOH A 100 440 232 HOH HOH . T 8 HOH A 101 441 233 HOH HOH . T 8 HOH A 102 442 237 HOH HOH . T 8 HOH A 103 443 238 HOH HOH . T 8 HOH A 104 444 241 HOH HOH . T 8 HOH A 105 445 242 HOH HOH . T 8 HOH A 106 446 244 HOH HOH . T 8 HOH A 107 447 245 HOH HOH . U 8 HOH B 1 6 6 HOH HOH . U 8 HOH B 2 7 7 HOH HOH . U 8 HOH B 3 8 8 HOH HOH . U 8 HOH B 4 9 9 HOH HOH . U 8 HOH B 5 10 10 HOH HOH . U 8 HOH B 6 14 14 HOH HOH . U 8 HOH B 7 17 17 HOH HOH . U 8 HOH B 8 19 19 HOH HOH . U 8 HOH B 9 25 25 HOH HOH . U 8 HOH B 10 26 26 HOH HOH . U 8 HOH B 11 27 27 HOH HOH . U 8 HOH B 12 28 28 HOH HOH . U 8 HOH B 13 30 30 HOH HOH . U 8 HOH B 14 31 31 HOH HOH . U 8 HOH B 15 32 32 HOH HOH . U 8 HOH B 16 36 36 HOH HOH . U 8 HOH B 17 352 3 HOH HOH . U 8 HOH B 18 353 37 HOH HOH . U 8 HOH B 19 354 44 HOH HOH . U 8 HOH B 20 355 47 HOH HOH . U 8 HOH B 21 356 50 HOH HOH . U 8 HOH B 22 357 51 HOH HOH . U 8 HOH B 23 358 54 HOH HOH . U 8 HOH B 24 359 56 HOH HOH . U 8 HOH B 25 360 57 HOH HOH . U 8 HOH B 26 361 61 HOH HOH . U 8 HOH B 27 362 62 HOH HOH . U 8 HOH B 28 363 63 HOH HOH . U 8 HOH B 29 364 64 HOH HOH . U 8 HOH B 30 365 65 HOH HOH . U 8 HOH B 31 366 66 HOH HOH . U 8 HOH B 32 367 67 HOH HOH . U 8 HOH B 33 368 68 HOH HOH . U 8 HOH B 34 369 73 HOH HOH . U 8 HOH B 35 370 74 HOH HOH . U 8 HOH B 36 371 76 HOH HOH . U 8 HOH B 37 372 77 HOH HOH . U 8 HOH B 38 373 79 HOH HOH . U 8 HOH B 39 374 84 HOH HOH . U 8 HOH B 40 375 88 HOH HOH . U 8 HOH B 41 376 89 HOH HOH . U 8 HOH B 42 377 90 HOH HOH . U 8 HOH B 43 378 95 HOH HOH . U 8 HOH B 44 379 96 HOH HOH . U 8 HOH B 45 380 103 HOH HOH . U 8 HOH B 46 381 107 HOH HOH . U 8 HOH B 47 382 112 HOH HOH . U 8 HOH B 48 383 115 HOH HOH . U 8 HOH B 49 384 116 HOH HOH . U 8 HOH B 50 385 117 HOH HOH . U 8 HOH B 51 386 119 HOH HOH . U 8 HOH B 52 387 120 HOH HOH . U 8 HOH B 53 388 121 HOH HOH . U 8 HOH B 54 389 122 HOH HOH . U 8 HOH B 55 390 123 HOH HOH . U 8 HOH B 56 391 133 HOH HOH . U 8 HOH B 57 392 134 HOH HOH . U 8 HOH B 58 393 135 HOH HOH . U 8 HOH B 59 394 141 HOH HOH . U 8 HOH B 60 395 144 HOH HOH . U 8 HOH B 61 396 147 HOH HOH . U 8 HOH B 62 397 151 HOH HOH . U 8 HOH B 63 398 152 HOH HOH . U 8 HOH B 64 399 156 HOH HOH . U 8 HOH B 65 400 158 HOH HOH . U 8 HOH B 66 401 165 HOH HOH . U 8 HOH B 67 402 170 HOH HOH . U 8 HOH B 68 403 171 HOH HOH . U 8 HOH B 69 404 173 HOH HOH . U 8 HOH B 70 405 174 HOH HOH . U 8 HOH B 71 406 192 HOH HOH . U 8 HOH B 72 407 193 HOH HOH . U 8 HOH B 73 408 195 HOH HOH . U 8 HOH B 74 409 201 HOH HOH . U 8 HOH B 75 410 202 HOH HOH . U 8 HOH B 76 411 203 HOH HOH . U 8 HOH B 77 412 204 HOH HOH . U 8 HOH B 78 413 205 HOH HOH . U 8 HOH B 79 414 206 HOH HOH . U 8 HOH B 80 415 207 HOH HOH . U 8 HOH B 81 416 208 HOH HOH . U 8 HOH B 82 417 209 HOH HOH . U 8 HOH B 83 418 210 HOH HOH . U 8 HOH B 84 419 211 HOH HOH . U 8 HOH B 85 420 212 HOH HOH . U 8 HOH B 86 421 213 HOH HOH . U 8 HOH B 87 422 214 HOH HOH . U 8 HOH B 88 423 215 HOH HOH . U 8 HOH B 89 424 216 HOH HOH . U 8 HOH B 90 425 217 HOH HOH . U 8 HOH B 91 426 218 HOH HOH . U 8 HOH B 92 427 189 HOH HOH . U 8 HOH B 93 428 220 HOH HOH . U 8 HOH B 94 429 229 HOH HOH . U 8 HOH B 95 430 231 HOH HOH . U 8 HOH B 96 431 234 HOH HOH . U 8 HOH B 97 432 239 HOH HOH . U 8 HOH B 98 433 243 HOH HOH . U 8 HOH B 99 434 246 HOH HOH . U 8 HOH B 100 435 219 HOH HOH . V 8 HOH C 1 34 34 HOH HOH . V 8 HOH C 2 41 41 HOH HOH . V 8 HOH C 3 71 71 HOH HOH . V 8 HOH C 4 175 175 HOH HOH . V 8 HOH C 5 228 228 HOH HOH . W 8 HOH D 1 11 11 HOH HOH . W 8 HOH D 2 21 21 HOH HOH . W 8 HOH D 3 132 132 HOH HOH . W 8 HOH D 4 221 221 HOH HOH . W 8 HOH D 5 222 222 HOH HOH . W 8 HOH D 6 223 223 HOH HOH . W 8 HOH D 7 224 224 HOH HOH . W 8 HOH D 8 240 240 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S SO4 . . . I 5 2.611 29.167 1.581 1 61.72 ? S SO4 352 A 1 HETATM 2 O O1 SO4 . . . I 5 3.935 29.351 2.166 1 57.07 ? O1 SO4 352 A 1 HETATM 3 O O2 SO4 . . . I 5 2.645 29.59 0.192 1 62.17 ? O2 SO4 352 A 1 HETATM 4 O O3 SO4 . . . I 5 2.217 27.76 1.605 1 59.5 ? O3 SO4 352 A 1 HETATM 5 O O4 SO4 . . . I 5 1.652 29.937 2.391 1 47.77 ? O4 SO4 352 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 303 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 5 #