data_3PFW # _model_server_result.job_id DovlYH-1pk6dHcAntwd4Eg _model_server_result.datetime_utc '2024-11-21 17:55:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3pfw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":415}' # _entry.id 3PFW # _exptl.entry_id 3PFW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 123.32 _cell.angle_gamma 90 _cell.entry_id 3PFW _cell.length_a 143.61 _cell.length_b 71.86 _cell.length_c 81.1 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3PFW _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N ? 3 F N N ? 3 H N N ? 3 I N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 3PFW _atom_sites.fract_transf_matrix[1][1] 0.006963 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004578 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013916 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014756 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NAD O 1 2 2 NAD NAD . D 3 GOL O 1 1 1 GOL GOL . E 3 GOL O 1 415 415 GOL GOL . F 3 GOL O 1 416 416 GOL GOL . G 2 NAD P 1 1 1 NAD NAD . H 3 GOL P 1 415 415 GOL GOL . I 3 GOL P 1 416 416 GOL GOL . J 4 HOH O 1 3 3 HOH HOH . J 4 HOH O 2 4 4 HOH HOH . J 4 HOH O 3 5 5 HOH HOH . J 4 HOH O 4 6 6 HOH HOH . J 4 HOH O 5 7 7 HOH HOH . J 4 HOH O 6 8 8 HOH HOH . J 4 HOH O 7 9 9 HOH HOH . J 4 HOH O 8 10 10 HOH HOH . J 4 HOH O 9 11 11 HOH HOH . J 4 HOH O 10 12 12 HOH HOH . J 4 HOH O 11 13 13 HOH HOH . J 4 HOH O 12 14 14 HOH HOH . J 4 HOH O 13 16 16 HOH HOH . J 4 HOH O 14 17 17 HOH HOH . J 4 HOH O 15 18 18 HOH HOH . J 4 HOH O 16 19 19 HOH HOH . J 4 HOH O 17 20 20 HOH HOH . J 4 HOH O 18 21 21 HOH HOH . J 4 HOH O 19 22 22 HOH HOH . J 4 HOH O 20 23 23 HOH HOH . J 4 HOH O 21 24 24 HOH HOH . J 4 HOH O 22 25 25 HOH HOH . J 4 HOH O 23 26 26 HOH HOH . J 4 HOH O 24 27 27 HOH HOH . J 4 HOH O 25 28 28 HOH HOH . J 4 HOH O 26 29 29 HOH HOH . J 4 HOH O 27 30 30 HOH HOH . J 4 HOH O 28 31 31 HOH HOH . J 4 HOH O 29 32 32 HOH HOH . J 4 HOH O 30 33 33 HOH HOH . J 4 HOH O 31 35 35 HOH HOH . J 4 HOH O 32 36 36 HOH HOH . J 4 HOH O 33 37 37 HOH HOH . J 4 HOH O 34 38 38 HOH HOH . J 4 HOH O 35 39 39 HOH HOH . J 4 HOH O 36 40 40 HOH HOH . J 4 HOH O 37 41 41 HOH HOH . J 4 HOH O 38 42 42 HOH HOH . J 4 HOH O 39 43 43 HOH HOH . J 4 HOH O 40 44 44 HOH HOH . J 4 HOH O 41 45 45 HOH HOH . J 4 HOH O 42 46 46 HOH HOH . J 4 HOH O 43 47 47 HOH HOH . J 4 HOH O 44 48 48 HOH HOH . J 4 HOH O 45 49 49 HOH HOH . J 4 HOH O 46 50 50 HOH HOH . J 4 HOH O 47 51 51 HOH HOH . J 4 HOH O 48 52 52 HOH HOH . J 4 HOH O 49 53 53 HOH HOH . J 4 HOH O 50 54 54 HOH HOH . J 4 HOH O 51 55 55 HOH HOH . J 4 HOH O 52 56 56 HOH HOH . J 4 HOH O 53 57 57 HOH HOH . J 4 HOH O 54 58 58 HOH HOH . J 4 HOH O 55 59 59 HOH HOH . J 4 HOH O 56 60 60 HOH HOH . J 4 HOH O 57 61 61 HOH HOH . J 4 HOH O 58 62 62 HOH HOH . J 4 HOH O 59 63 63 HOH HOH . J 4 HOH O 60 64 64 HOH HOH . J 4 HOH O 61 65 65 HOH HOH . J 4 HOH O 62 66 66 HOH HOH . J 4 HOH O 63 67 67 HOH HOH . J 4 HOH O 64 68 68 HOH HOH . J 4 HOH O 65 417 417 HOH HOH . J 4 HOH O 66 418 418 HOH HOH . J 4 HOH O 67 419 419 HOH HOH . J 4 HOH O 68 420 420 HOH HOH . J 4 HOH O 69 421 421 HOH HOH . J 4 HOH O 70 422 422 HOH HOH . J 4 HOH O 71 423 423 HOH HOH . J 4 HOH O 72 424 424 HOH HOH . J 4 HOH O 73 425 425 HOH HOH . J 4 HOH O 74 426 426 HOH HOH . J 4 HOH O 75 427 427 HOH HOH . J 4 HOH O 76 428 428 HOH HOH . J 4 HOH O 77 429 429 HOH HOH . J 4 HOH O 78 430 430 HOH HOH . J 4 HOH O 79 431 431 HOH HOH . J 4 HOH O 80 432 432 HOH HOH . J 4 HOH O 81 433 433 HOH HOH . J 4 HOH O 82 434 434 HOH HOH . J 4 HOH O 83 435 435 HOH HOH . J 4 HOH O 84 436 436 HOH HOH . J 4 HOH O 85 437 437 HOH HOH . J 4 HOH O 86 438 438 HOH HOH . J 4 HOH O 87 439 439 HOH HOH . J 4 HOH O 88 440 440 HOH HOH . J 4 HOH O 89 441 441 HOH HOH . J 4 HOH O 90 442 442 HOH HOH . J 4 HOH O 91 443 443 HOH HOH . J 4 HOH O 92 444 444 HOH HOH . J 4 HOH O 93 445 445 HOH HOH . J 4 HOH O 94 446 446 HOH HOH . J 4 HOH O 95 447 447 HOH HOH . J 4 HOH O 96 448 448 HOH HOH . J 4 HOH O 97 449 449 HOH HOH . J 4 HOH O 98 450 450 HOH HOH . J 4 HOH O 99 451 451 HOH HOH . J 4 HOH O 100 452 452 HOH HOH . J 4 HOH O 101 453 453 HOH HOH . J 4 HOH O 102 454 454 HOH HOH . J 4 HOH O 103 455 455 HOH HOH . J 4 HOH O 104 456 456 HOH HOH . J 4 HOH O 105 457 457 HOH HOH . J 4 HOH O 106 458 458 HOH HOH . J 4 HOH O 107 459 459 HOH HOH . J 4 HOH O 108 460 460 HOH HOH . J 4 HOH O 109 461 461 HOH HOH . J 4 HOH O 110 462 462 HOH HOH . J 4 HOH O 111 463 463 HOH HOH . J 4 HOH O 112 464 464 HOH HOH . J 4 HOH O 113 465 465 HOH HOH . J 4 HOH O 114 466 466 HOH HOH . J 4 HOH O 115 467 467 HOH HOH . J 4 HOH O 116 468 468 HOH HOH . J 4 HOH O 117 469 469 HOH HOH . J 4 HOH O 118 470 470 HOH HOH . J 4 HOH O 119 471 471 HOH HOH . J 4 HOH O 120 472 472 HOH HOH . J 4 HOH O 121 473 473 HOH HOH . J 4 HOH O 122 474 474 HOH HOH . J 4 HOH O 123 475 475 HOH HOH . J 4 HOH O 124 476 476 HOH HOH . J 4 HOH O 125 477 477 HOH HOH . J 4 HOH O 126 478 478 HOH HOH . J 4 HOH O 127 479 479 HOH HOH . J 4 HOH O 128 480 480 HOH HOH . J 4 HOH O 129 481 481 HOH HOH . J 4 HOH O 130 482 482 HOH HOH . J 4 HOH O 131 483 483 HOH HOH . J 4 HOH O 132 484 484 HOH HOH . J 4 HOH O 133 485 485 HOH HOH . J 4 HOH O 134 486 486 HOH HOH . J 4 HOH O 135 487 487 HOH HOH . J 4 HOH O 136 488 488 HOH HOH . J 4 HOH O 137 489 489 HOH HOH . J 4 HOH O 138 490 490 HOH HOH . J 4 HOH O 139 491 491 HOH HOH . J 4 HOH O 140 492 492 HOH HOH . J 4 HOH O 141 493 493 HOH HOH . J 4 HOH O 142 494 494 HOH HOH . J 4 HOH O 143 495 495 HOH HOH . J 4 HOH O 144 496 496 HOH HOH . J 4 HOH O 145 497 497 HOH HOH . J 4 HOH O 146 498 498 HOH HOH . J 4 HOH O 147 499 499 HOH HOH . J 4 HOH O 148 500 500 HOH HOH . J 4 HOH O 149 501 501 HOH HOH . K 4 HOH P 1 15 15 HOH HOH . K 4 HOH P 2 34 34 HOH HOH . K 4 HOH P 3 417 417 HOH HOH . K 4 HOH P 4 418 418 HOH HOH . K 4 HOH P 5 419 419 HOH HOH . K 4 HOH P 6 420 420 HOH HOH . K 4 HOH P 7 421 421 HOH HOH . K 4 HOH P 8 422 422 HOH HOH . K 4 HOH P 9 423 423 HOH HOH . K 4 HOH P 10 424 424 HOH HOH . K 4 HOH P 11 425 425 HOH HOH . K 4 HOH P 12 426 426 HOH HOH . K 4 HOH P 13 427 427 HOH HOH . K 4 HOH P 14 428 428 HOH HOH . K 4 HOH P 15 429 429 HOH HOH . K 4 HOH P 16 430 430 HOH HOH . K 4 HOH P 17 431 431 HOH HOH . K 4 HOH P 18 432 432 HOH HOH . K 4 HOH P 19 433 433 HOH HOH . K 4 HOH P 20 434 434 HOH HOH . K 4 HOH P 21 435 435 HOH HOH . K 4 HOH P 22 436 436 HOH HOH . K 4 HOH P 23 437 437 HOH HOH . K 4 HOH P 24 438 438 HOH HOH . K 4 HOH P 25 439 439 HOH HOH . K 4 HOH P 26 440 440 HOH HOH . K 4 HOH P 27 441 441 HOH HOH . K 4 HOH P 28 442 442 HOH HOH . K 4 HOH P 29 443 443 HOH HOH . K 4 HOH P 30 444 444 HOH HOH . K 4 HOH P 31 445 445 HOH HOH . K 4 HOH P 32 446 446 HOH HOH . K 4 HOH P 33 447 447 HOH HOH . K 4 HOH P 34 448 448 HOH HOH . K 4 HOH P 35 449 449 HOH HOH . K 4 HOH P 36 451 451 HOH HOH . K 4 HOH P 37 452 452 HOH HOH . K 4 HOH P 38 453 453 HOH HOH . K 4 HOH P 39 454 454 HOH HOH . K 4 HOH P 40 455 455 HOH HOH . K 4 HOH P 41 456 456 HOH HOH . K 4 HOH P 42 457 457 HOH HOH . K 4 HOH P 43 458 458 HOH HOH . K 4 HOH P 44 459 459 HOH HOH . K 4 HOH P 45 460 460 HOH HOH . K 4 HOH P 46 461 461 HOH HOH . K 4 HOH P 47 462 462 HOH HOH . K 4 HOH P 48 463 463 HOH HOH . K 4 HOH P 49 464 464 HOH HOH . K 4 HOH P 50 465 465 HOH HOH . K 4 HOH P 51 466 466 HOH HOH . K 4 HOH P 52 467 467 HOH HOH . K 4 HOH P 53 468 468 HOH HOH . K 4 HOH P 54 469 469 HOH HOH . K 4 HOH P 55 470 470 HOH HOH . K 4 HOH P 56 471 471 HOH HOH . K 4 HOH P 57 472 472 HOH HOH . K 4 HOH P 58 473 473 HOH HOH . K 4 HOH P 59 474 474 HOH HOH . K 4 HOH P 60 475 475 HOH HOH . K 4 HOH P 61 476 476 HOH HOH . K 4 HOH P 62 477 477 HOH HOH . K 4 HOH P 63 478 478 HOH HOH . K 4 HOH P 64 479 479 HOH HOH . K 4 HOH P 65 480 480 HOH HOH . K 4 HOH P 66 481 481 HOH HOH . K 4 HOH P 67 482 482 HOH HOH . K 4 HOH P 68 483 483 HOH HOH . K 4 HOH P 69 484 484 HOH HOH . K 4 HOH P 70 485 485 HOH HOH . K 4 HOH P 71 486 486 HOH HOH . K 4 HOH P 72 487 487 HOH HOH . K 4 HOH P 73 488 488 HOH HOH . K 4 HOH P 74 489 489 HOH HOH . K 4 HOH P 75 490 490 HOH HOH . K 4 HOH P 76 491 491 HOH HOH . K 4 HOH P 77 492 492 HOH HOH . K 4 HOH P 78 493 493 HOH HOH . K 4 HOH P 79 494 494 HOH HOH . K 4 HOH P 80 495 495 HOH HOH . K 4 HOH P 81 496 496 HOH HOH . K 4 HOH P 82 497 497 HOH HOH . K 4 HOH P 83 498 498 HOH HOH . K 4 HOH P 84 499 499 HOH HOH . K 4 HOH P 85 500 500 HOH HOH . K 4 HOH P 86 501 501 HOH HOH . K 4 HOH P 87 502 502 HOH HOH . K 4 HOH P 88 503 503 HOH HOH . K 4 HOH P 89 504 504 HOH HOH . K 4 HOH P 90 505 505 HOH HOH . K 4 HOH P 91 506 506 HOH HOH . K 4 HOH P 92 507 507 HOH HOH . K 4 HOH P 93 508 508 HOH HOH . K 4 HOH P 94 509 509 HOH HOH . K 4 HOH P 95 510 510 HOH HOH . K 4 HOH P 96 511 511 HOH HOH . K 4 HOH P 97 512 512 HOH HOH . K 4 HOH P 98 513 513 HOH HOH . K 4 HOH P 99 514 514 HOH HOH . K 4 HOH P 100 515 515 HOH HOH . K 4 HOH P 101 516 516 HOH HOH . K 4 HOH P 102 517 517 HOH HOH . K 4 HOH P 103 518 518 HOH HOH . K 4 HOH P 104 519 519 HOH HOH . K 4 HOH P 105 520 520 HOH HOH . K 4 HOH P 106 521 521 HOH HOH . K 4 HOH P 107 522 522 HOH HOH . K 4 HOH P 108 523 523 HOH HOH . K 4 HOH P 109 524 524 HOH HOH . K 4 HOH P 110 525 525 HOH HOH . K 4 HOH P 111 526 526 HOH HOH . K 4 HOH P 112 527 527 HOH HOH . K 4 HOH P 113 528 528 HOH HOH . K 4 HOH P 114 529 529 HOH HOH . K 4 HOH P 115 530 530 HOH HOH . K 4 HOH P 116 531 531 HOH HOH . K 4 HOH P 117 532 532 HOH HOH . K 4 HOH P 118 533 533 HOH HOH . K 4 HOH P 119 534 534 HOH HOH . K 4 HOH P 120 535 535 HOH HOH . K 4 HOH P 121 536 536 HOH HOH . K 4 HOH P 122 537 537 HOH HOH . K 4 HOH P 123 538 538 HOH HOH . K 4 HOH P 124 539 539 HOH HOH . K 4 HOH P 125 540 540 HOH HOH . K 4 HOH P 126 541 541 HOH HOH . K 4 HOH P 127 542 542 HOH HOH . K 4 HOH P 128 543 543 HOH HOH . K 4 HOH P 129 544 544 HOH HOH . K 4 HOH P 130 545 545 HOH HOH . K 4 HOH P 131 546 546 HOH HOH . K 4 HOH P 132 547 547 HOH HOH . K 4 HOH P 133 548 548 HOH HOH . K 4 HOH P 134 549 549 HOH HOH . K 4 HOH P 135 550 550 HOH HOH . K 4 HOH P 136 551 551 HOH HOH . K 4 HOH P 137 552 552 HOH HOH . K 4 HOH P 138 553 553 HOH HOH . K 4 HOH P 139 554 554 HOH HOH . K 4 HOH P 140 555 555 HOH HOH . K 4 HOH P 141 556 556 HOH HOH . K 4 HOH P 142 557 557 HOH HOH . K 4 HOH P 143 558 558 HOH HOH . K 4 HOH P 144 559 559 HOH HOH . K 4 HOH P 145 560 560 HOH HOH . K 4 HOH P 146 561 561 HOH HOH . K 4 HOH P 147 562 562 HOH HOH . K 4 HOH P 148 563 563 HOH HOH . K 4 HOH P 149 564 564 HOH HOH . K 4 HOH P 150 565 565 HOH HOH . K 4 HOH P 151 566 566 HOH HOH . K 4 HOH P 152 567 567 HOH HOH . K 4 HOH P 153 568 568 HOH HOH . K 4 HOH P 154 569 569 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . A . H 3 3 49.296 -16.284 0.5 36.63 ? C1 GOL 415 P 1 HETATM 2 C C1 GOL . B . H 3 3.358 49.745 -16.303 0.5 51.7 ? C1 GOL 415 P 1 HETATM 3 O O1 GOL . A . H 3 2.014 48.972 -15.286 0.5 23.09 ? O1 GOL 415 P 1 HETATM 4 O O1 GOL . B . H 3 3.749 49.356 -17.628 0.5 37.66 ? O1 GOL 415 P 1 HETATM 5 C C2 GOL . A . H 3 3.75 50.607 -15.993 0.5 45.51 ? C2 GOL 415 P 1 HETATM 6 C C2 GOL . B . H 3 4.115 51.011 -15.908 0.5 53.52 ? C2 GOL 415 P 1 HETATM 7 O O2 GOL . A . H 3 4.747 50.434 -14.972 0.5 44.54 ? O2 GOL 415 P 1 HETATM 8 O O2 GOL . B . H 3 5.04 50.74 -14.846 0.5 48.78 ? O2 GOL 415 P 1 HETATM 9 C C3 GOL . A . H 3 4.443 51.1 -17.262 0.5 43.64 ? C3 GOL 415 P 1 HETATM 10 C C3 GOL . B . H 3 4.863 51.517 -17.131 0.5 51.38 ? C3 GOL 415 P 1 HETATM 11 O O3 GOL . A . H 3 3.742 52.24 -17.783 0.5 53.74 ? O3 GOL 415 P 1 HETATM 12 O O3 GOL . B . H 3 3.988 52.323 -17.935 0.5 63.16 ? O3 GOL 415 P 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 330 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 12 #