data_3PFY # _model_server_result.job_id rh4qiReG5S_guZ2GpQNx8Q _model_server_result.datetime_utc '2024-11-26 10:07:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3pfy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":402}' # _entry.id 3PFY # _exptl.entry_id 3PFY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 194.226 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'TETRAETHYLENE GLYCOL' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3PFY _cell.length_a 80.605 _cell.length_b 80.605 _cell.length_c 52.263 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3PFY _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C MSE 37 A MSE 191 1_555 A N ASP 38 A ASP 192 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale2 A C GLN 63 A GLN 217 1_555 A N MSE 64 A MSE 218 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale3 A C MSE 64 A MSE 218 1_555 A N LYS 65 A LYS 219 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale4 A C ASP 84 A ASP 238 1_555 A N MSE 85 A MSE 239 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.335 ? covale ? covale5 A C ASP 84 A ASP 238 1_555 A N MSE 85 A MSE 239 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.327 ? covale ? covale6 A C MSE 85 A MSE 239 1_555 A N HIS 86 A HIS 240 1_555 ? A ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale7 A C MSE 85 A MSE 239 1_555 A N HIS 86 A HIS 240 1_555 ? B ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale8 A C CYS 93 A CYS 247 1_555 A N MSE 94 A MSE 248 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.344 ? covale ? covale9 A C MSE 94 A MSE 248 1_555 A N ASP 95 A ASP 249 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.341 ? covale ? covale10 A C LEU 97 A LEU 251 1_555 A N MSE 98 A MSE 252 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.334 ? covale ? covale11 A C LEU 97 A LEU 251 1_555 A N MSE 98 A MSE 252 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.335 ? covale ? covale12 A C MSE 98 A MSE 252 1_555 A N LYS 99 A LYS 253 1_555 ? A ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale13 A C MSE 98 A MSE 252 1_555 A N LYS 99 A LYS 253 1_555 ? B ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale14 A C GLU 130 A GLU 284 1_555 A N MSE 131 A MSE 285 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale15 A C MSE 131 A MSE 285 1_555 A N GLN 132 A GLN 286 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.349 ? covale ? covale16 A C ALA 133 A ALA 287 1_555 A N MSE 134 A MSE 288 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale17 A C MSE 134 A MSE 288 1_555 A N ALA 135 A ALA 289 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale18 A C GLU 136 A GLU 290 1_555 A N MSE 137 A MSE 291 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale19 A C MSE 137 A MSE 291 1_555 A N TYR 138 A TYR 292 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? # _chem_comp.formula 'C8 H18 O5' _chem_comp.formula_weight 194.226 _chem_comp.id PG4 _chem_comp.mon_nstd_flag . _chem_comp.name 'TETRAETHYLENE GLYCOL' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C1 PG4 sing 253 n n O1 HO1 PG4 sing 254 n n C1 C2 PG4 sing 255 n n C1 H11 PG4 sing 256 n n C1 H12 PG4 sing 257 n n C2 O2 PG4 sing 258 n n C2 H21 PG4 sing 259 n n C2 H22 PG4 sing 260 n n O2 C3 PG4 sing 261 n n C3 C4 PG4 sing 262 n n C3 H31 PG4 sing 263 n n C3 H32 PG4 sing 264 n n C4 O3 PG4 sing 265 n n C4 H41 PG4 sing 266 n n C4 H42 PG4 sing 267 n n O3 C5 PG4 sing 268 n n C5 C6 PG4 sing 269 n n C5 H51 PG4 sing 270 n n C5 H52 PG4 sing 271 n n C6 O4 PG4 sing 272 n n C6 H61 PG4 sing 273 n n C6 H62 PG4 sing 274 n n O4 C7 PG4 sing 275 n n C7 C8 PG4 sing 276 n n C7 H71 PG4 sing 277 n n C7 H72 PG4 sing 278 n n C8 O5 PG4 sing 279 n n C8 H81 PG4 sing 280 n n C8 H82 PG4 sing 281 n n O5 HO5 PG4 sing 282 n n # _atom_sites.entry_id 3PFY _atom_sites.fract_transf_matrix[1][1] 0.012406 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012406 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019134 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PEG A 1 400 400 PEG PEG . C 2 PEG A 1 401 401 PEG PEG . D 3 PG4 A 1 402 402 PG4 PG4 . E 4 SO4 A 1 403 403 SO4 SO4 . F 5 UNX A 1 508 508 UNX UNX . G 6 HOH A 1 404 404 HOH HOH . G 6 HOH A 2 405 405 HOH HOH . G 6 HOH A 3 406 406 HOH HOH . G 6 HOH A 4 407 407 HOH HOH . G 6 HOH A 5 408 408 HOH HOH . G 6 HOH A 6 409 409 HOH HOH . G 6 HOH A 7 410 410 HOH HOH . G 6 HOH A 8 411 411 HOH HOH . G 6 HOH A 9 412 412 HOH HOH . G 6 HOH A 10 413 413 HOH HOH . G 6 HOH A 11 414 414 HOH HOH . G 6 HOH A 12 415 415 HOH HOH . G 6 HOH A 13 416 416 HOH HOH . G 6 HOH A 14 417 417 HOH HOH . G 6 HOH A 15 418 418 HOH HOH . G 6 HOH A 16 419 419 HOH HOH . G 6 HOH A 17 420 420 HOH HOH . G 6 HOH A 18 421 421 HOH HOH . G 6 HOH A 19 422 422 HOH HOH . G 6 HOH A 20 423 423 HOH HOH . G 6 HOH A 21 424 424 HOH HOH . G 6 HOH A 22 425 425 HOH HOH . G 6 HOH A 23 426 426 HOH HOH . G 6 HOH A 24 427 427 HOH HOH . G 6 HOH A 25 428 428 HOH HOH . G 6 HOH A 26 429 429 HOH HOH . G 6 HOH A 27 430 430 HOH HOH . G 6 HOH A 28 431 431 HOH HOH . G 6 HOH A 29 432 432 HOH HOH . G 6 HOH A 30 433 433 HOH HOH . G 6 HOH A 31 434 434 HOH HOH . G 6 HOH A 32 435 435 HOH HOH . G 6 HOH A 33 436 436 HOH HOH . G 6 HOH A 34 437 437 HOH HOH . G 6 HOH A 35 438 438 HOH HOH . G 6 HOH A 36 439 439 HOH HOH . G 6 HOH A 37 440 440 HOH HOH . G 6 HOH A 38 441 441 HOH HOH . G 6 HOH A 39 442 442 HOH HOH . G 6 HOH A 40 443 443 HOH HOH . G 6 HOH A 41 444 444 HOH HOH . G 6 HOH A 42 445 445 HOH HOH . G 6 HOH A 43 446 446 HOH HOH . G 6 HOH A 44 447 447 HOH HOH . G 6 HOH A 45 448 448 HOH HOH . G 6 HOH A 46 449 449 HOH HOH . G 6 HOH A 47 450 450 HOH HOH . G 6 HOH A 48 451 451 HOH HOH . G 6 HOH A 49 452 452 HOH HOH . G 6 HOH A 50 453 453 HOH HOH . G 6 HOH A 51 454 454 HOH HOH . G 6 HOH A 52 455 455 HOH HOH . G 6 HOH A 53 456 456 HOH HOH . G 6 HOH A 54 457 457 HOH HOH . G 6 HOH A 55 458 458 HOH HOH . G 6 HOH A 56 459 459 HOH HOH . G 6 HOH A 57 460 460 HOH HOH . G 6 HOH A 58 461 461 HOH HOH . G 6 HOH A 59 462 462 HOH HOH . G 6 HOH A 60 463 463 HOH HOH . G 6 HOH A 61 464 464 HOH HOH . G 6 HOH A 62 465 465 HOH HOH . G 6 HOH A 63 466 466 HOH HOH . G 6 HOH A 64 467 467 HOH HOH . G 6 HOH A 65 468 468 HOH HOH . G 6 HOH A 66 469 469 HOH HOH . G 6 HOH A 67 470 470 HOH HOH . G 6 HOH A 68 471 471 HOH HOH . G 6 HOH A 69 472 472 HOH HOH . G 6 HOH A 70 473 473 HOH HOH . G 6 HOH A 71 474 474 HOH HOH . G 6 HOH A 72 475 475 HOH HOH . G 6 HOH A 73 476 476 HOH HOH . G 6 HOH A 74 477 477 HOH HOH . G 6 HOH A 75 478 478 HOH HOH . G 6 HOH A 76 479 479 HOH HOH . G 6 HOH A 77 480 480 HOH HOH . G 6 HOH A 78 481 481 HOH HOH . G 6 HOH A 79 482 482 HOH HOH . G 6 HOH A 80 483 483 HOH HOH . G 6 HOH A 81 484 484 HOH HOH . G 6 HOH A 82 485 485 HOH HOH . G 6 HOH A 83 486 486 HOH HOH . G 6 HOH A 84 487 487 HOH HOH . G 6 HOH A 85 488 488 HOH HOH . G 6 HOH A 86 489 489 HOH HOH . G 6 HOH A 87 490 490 HOH HOH . G 6 HOH A 88 491 491 HOH HOH . G 6 HOH A 89 492 492 HOH HOH . G 6 HOH A 90 493 493 HOH HOH . G 6 HOH A 91 494 494 HOH HOH . G 6 HOH A 92 495 495 HOH HOH . G 6 HOH A 93 496 496 HOH HOH . G 6 HOH A 94 497 497 HOH HOH . G 6 HOH A 95 498 498 HOH HOH . G 6 HOH A 96 499 499 HOH HOH . G 6 HOH A 97 500 500 HOH HOH . G 6 HOH A 98 501 501 HOH HOH . G 6 HOH A 99 502 502 HOH HOH . G 6 HOH A 100 503 503 HOH HOH . G 6 HOH A 101 504 504 HOH HOH . G 6 HOH A 102 505 505 HOH HOH . G 6 HOH A 103 506 506 HOH HOH . G 6 HOH A 104 507 507 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 PG4 . . . D 3 4.896 34.682 -3.393 1 62.6 ? O1 PG4 402 A 1 HETATM 2 C C1 PG4 . . . D 3 3.784 35.538 -3.113 1 62.91 ? C1 PG4 402 A 1 HETATM 3 C C2 PG4 . . . D 3 4.173 36.51 -2.001 1 63.95 ? C2 PG4 402 A 1 HETATM 4 O O2 PG4 . . . D 3 3.179 37.537 -1.751 1 64.61 ? O2 PG4 402 A 1 HETATM 5 C C3 PG4 . . . D 3 3.694 38.84 -2.089 1 64.62 ? C3 PG4 402 A 1 HETATM 6 C C4 PG4 . . . D 3 4.591 39.424 -0.997 1 64.66 ? C4 PG4 402 A 1 HETATM 7 O O3 PG4 . . . D 3 5.976 39.248 -1.359 1 64.85 ? O3 PG4 402 A 1 HETATM 8 C C5 PG4 . . . D 3 6.544 40.486 -1.838 1 64.16 ? C5 PG4 402 A 1 HETATM 9 C C6 PG4 . . . D 3 7.94 40.205 -2.379 1 63.83 ? C6 PG4 402 A 1 HETATM 10 O O4 PG4 . . . D 3 7.888 39.651 -3.704 1 64.04 ? O4 PG4 402 A 1 HETATM 11 C C7 PG4 . . . D 3 8.916 38.654 -3.842 1 62.9 ? C7 PG4 402 A 1 HETATM 12 C C8 PG4 . . . D 3 8.695 37.786 -5.084 1 62.89 ? C8 PG4 402 A 1 HETATM 13 O O5 PG4 . . . D 3 9.607 36.69 -5.033 1 62.13 ? O5 PG4 402 A 1 # _model_server_stats.io_time_ms 61 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 284 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 13 #