data_3PG3 # _model_server_result.job_id 5aAQbbInSwLtCY5o4BJMbw _model_server_result.datetime_utc '2024-10-20 20:37:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3pg3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":362}' # _entry.id 3PG3 # _exptl.entry_id 3PG3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 490.62 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-[3-tert-butyl-1-(4-methylphenyl)-1H-pyrazol-5-yl]-3-{4-[2-(pyridin-3-ylmethoxy)ethyl]-1,3-thiazol-2-yl}urea _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3PG3 _cell.length_a 69.11 _cell.length_b 69.97 _cell.length_c 74.53 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3PG3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C26 H30 N6 O2 S' _chem_comp.formula_weight 490.62 _chem_comp.id DG7 _chem_comp.mon_nstd_flag . _chem_comp.name 1-[3-tert-butyl-1-(4-methylphenyl)-1H-pyrazol-5-yl]-3-{4-[2-(pyridin-3-ylmethoxy)ethyl]-1,3-thiazol-2-yl}urea _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 1-(3-tert-butyl-1-p-tolyl-1H-pyrazol-5-yl)-3-(4-(2-(pyridin-3-ylmethoxy)ethyl)thiazol-2-yl)urea # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAA CBA DG7 sing 131 n n CAA HAA DG7 sing 132 n n CAA HAAA DG7 sing 133 n n CAA HAAB DG7 sing 134 n n CBI CAB DG7 sing 135 n n CAB HAB DG7 sing 136 n n CAB HABA DG7 sing 137 n n CAB HABB DG7 sing 138 n n CAC CBI DG7 sing 139 n n CAC HAC DG7 sing 140 n n CAC HACA DG7 sing 141 n n CAC HACB DG7 sing 142 n n CBI CAD DG7 sing 143 n n CAD HAD DG7 sing 144 n n CAD HADA DG7 sing 145 n n CAD HADB DG7 sing 146 n n CAZ OAE DG7 doub 147 n n CAH CAF DG7 doub 148 n y CAF CAG DG7 sing 149 n y CAF HAF DG7 sing 150 n n CAG NAS DG7 doub 151 n y CAG HAG DG7 sing 152 n n CAH CBB DG7 sing 153 n y CAH HAH DG7 sing 154 n n CBA CAI DG7 doub 155 n y CAI CAK DG7 sing 156 n y CAI HAI DG7 sing 157 n n CBA CAJ DG7 sing 158 n y CAJ CAL DG7 doub 159 n y CAJ HAJ DG7 sing 160 n n CAK CBD DG7 doub 161 n y CAK HAK DG7 sing 162 n n CAL CBD DG7 sing 163 n y CAL HAL DG7 sing 164 n n CBB CAM DG7 doub 165 n y CAM NAS DG7 sing 166 n y CAM HAM DG7 sing 167 n n CBC CAN DG7 doub 168 n y SAY CAN DG7 sing 169 n y CAN HAN DG7 sing 170 n n CBE CAO DG7 doub 171 n y CBF CAO DG7 sing 172 n y CAO HAO DG7 sing 173 n n CAP CAQ DG7 sing 174 n n CAP OAX DG7 sing 175 n n CAP HAP DG7 sing 176 n n CAP HAPA DG7 sing 177 n n CBC CAQ DG7 sing 178 n n CAQ HAQ DG7 sing 179 n n CAQ HAQA DG7 sing 180 n n OAX CAR DG7 sing 181 n n CAR CBB DG7 sing 182 n n CAR HAR DG7 sing 183 n n CAR HARA DG7 sing 184 n n CBG NAT DG7 doub 185 n y NAT CBC DG7 sing 186 n y NBH NAU DG7 sing 187 n y NAU CBF DG7 doub 188 n y CBE NAV DG7 sing 189 n n NAV CAZ DG7 sing 190 n n NAV HNAV DG7 sing 191 n n NAW CAZ DG7 sing 192 n n NAW CBG DG7 sing 193 n n NAW HNAW DG7 sing 194 n n CBG SAY DG7 sing 195 n y CBD NBH DG7 sing 196 n y NBH CBE DG7 sing 197 n y CBF CBI DG7 sing 198 n n # _atom_sites.entry_id 3PG3 _atom_sites.fract_transf_matrix[1][1] 0.01447 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014292 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013417 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 BOG A 1 361 1 BOG BOG . C 3 DG7 A 1 362 1 DG7 DG7 . D 4 HOH A 1 363 1 HOH HOH . D 4 HOH A 2 364 2 HOH HOH . D 4 HOH A 3 365 3 HOH HOH . D 4 HOH A 4 366 4 HOH HOH . D 4 HOH A 5 367 5 HOH HOH . D 4 HOH A 6 368 6 HOH HOH . D 4 HOH A 7 369 7 HOH HOH . D 4 HOH A 8 370 8 HOH HOH . D 4 HOH A 9 371 9 HOH HOH . D 4 HOH A 10 372 10 HOH HOH . D 4 HOH A 11 373 11 HOH HOH . D 4 HOH A 12 374 12 HOH HOH . D 4 HOH A 13 375 13 HOH HOH . D 4 HOH A 14 376 14 HOH HOH . D 4 HOH A 15 377 15 HOH HOH . D 4 HOH A 16 378 16 HOH HOH . D 4 HOH A 17 379 17 HOH HOH . D 4 HOH A 18 380 18 HOH HOH . D 4 HOH A 19 381 19 HOH HOH . D 4 HOH A 20 382 20 HOH HOH . D 4 HOH A 21 383 21 HOH HOH . D 4 HOH A 22 384 22 HOH HOH . D 4 HOH A 23 385 23 HOH HOH . D 4 HOH A 24 386 24 HOH HOH . D 4 HOH A 25 387 25 HOH HOH . D 4 HOH A 26 388 27 HOH HOH . D 4 HOH A 27 389 28 HOH HOH . D 4 HOH A 28 390 29 HOH HOH . D 4 HOH A 29 391 30 HOH HOH . D 4 HOH A 30 392 31 HOH HOH . D 4 HOH A 31 393 32 HOH HOH . D 4 HOH A 32 394 33 HOH HOH . D 4 HOH A 33 395 34 HOH HOH . D 4 HOH A 34 396 35 HOH HOH . D 4 HOH A 35 397 36 HOH HOH . D 4 HOH A 36 398 37 HOH HOH . D 4 HOH A 37 399 38 HOH HOH . D 4 HOH A 38 400 39 HOH HOH . D 4 HOH A 39 401 40 HOH HOH . D 4 HOH A 40 402 41 HOH HOH . D 4 HOH A 41 403 42 HOH HOH . D 4 HOH A 42 404 43 HOH HOH . D 4 HOH A 43 405 44 HOH HOH . D 4 HOH A 44 406 45 HOH HOH . D 4 HOH A 45 407 46 HOH HOH . D 4 HOH A 46 408 47 HOH HOH . D 4 HOH A 47 409 48 HOH HOH . D 4 HOH A 48 410 49 HOH HOH . D 4 HOH A 49 411 50 HOH HOH . D 4 HOH A 50 412 51 HOH HOH . D 4 HOH A 51 413 52 HOH HOH . D 4 HOH A 52 414 53 HOH HOH . D 4 HOH A 53 415 54 HOH HOH . D 4 HOH A 54 416 55 HOH HOH . D 4 HOH A 55 417 56 HOH HOH . D 4 HOH A 56 418 57 HOH HOH . D 4 HOH A 57 419 58 HOH HOH . D 4 HOH A 58 420 59 HOH HOH . D 4 HOH A 59 421 60 HOH HOH . D 4 HOH A 60 422 61 HOH HOH . D 4 HOH A 61 423 62 HOH HOH . D 4 HOH A 62 424 63 HOH HOH . D 4 HOH A 63 425 64 HOH HOH . D 4 HOH A 64 426 65 HOH HOH . D 4 HOH A 65 427 66 HOH HOH . D 4 HOH A 66 428 67 HOH HOH . D 4 HOH A 67 429 69 HOH HOH . D 4 HOH A 68 430 70 HOH HOH . D 4 HOH A 69 431 71 HOH HOH . D 4 HOH A 70 432 72 HOH HOH . D 4 HOH A 71 433 73 HOH HOH . D 4 HOH A 72 434 74 HOH HOH . D 4 HOH A 73 435 76 HOH HOH . D 4 HOH A 74 436 77 HOH HOH . D 4 HOH A 75 437 78 HOH HOH . D 4 HOH A 76 438 79 HOH HOH . D 4 HOH A 77 439 80 HOH HOH . D 4 HOH A 78 440 81 HOH HOH . D 4 HOH A 79 441 82 HOH HOH . D 4 HOH A 80 442 83 HOH HOH . D 4 HOH A 81 443 84 HOH HOH . D 4 HOH A 82 444 86 HOH HOH . D 4 HOH A 83 445 87 HOH HOH . D 4 HOH A 84 446 88 HOH HOH . D 4 HOH A 85 447 89 HOH HOH . D 4 HOH A 86 448 90 HOH HOH . D 4 HOH A 87 449 91 HOH HOH . D 4 HOH A 88 450 92 HOH HOH . D 4 HOH A 89 451 93 HOH HOH . D 4 HOH A 90 452 94 HOH HOH . D 4 HOH A 91 453 95 HOH HOH . D 4 HOH A 92 454 96 HOH HOH . D 4 HOH A 93 455 97 HOH HOH . D 4 HOH A 94 456 98 HOH HOH . D 4 HOH A 95 457 99 HOH HOH . D 4 HOH A 96 458 100 HOH HOH . D 4 HOH A 97 459 101 HOH HOH . D 4 HOH A 98 460 102 HOH HOH . D 4 HOH A 99 461 103 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAA DG7 . . . C 3 -19.969 -7.01 10.742 1 25.88 ? CAA DG7 362 A 1 HETATM 2 C CAB DG7 . . . C 3 -15.198 -9.667 18.844 1 23.92 ? CAB DG7 362 A 1 HETATM 3 C CAC DG7 . . . C 3 -13.816 -9.322 16.809 1 22.4 ? CAC DG7 362 A 1 HETATM 4 C CAD DG7 . . . C 3 -13.791 -7.616 18.604 1 24.62 ? CAD DG7 362 A 1 HETATM 5 O OAE DG7 . . . C 3 -18.257 -4.895 18.881 1 19.11 ? OAE DG7 362 A 1 HETATM 6 C CAF DG7 . . . C 3 -21.994 3.782 23.155 1 33.83 ? CAF DG7 362 A 1 HETATM 7 C CAG DG7 . . . C 3 -21.961 3.566 24.534 1 33.67 ? CAG DG7 362 A 1 HETATM 8 C CAH DG7 . . . C 3 -22.462 2.762 22.322 1 33.33 ? CAH DG7 362 A 1 HETATM 9 C CAI DG7 . . . C 3 -18.9 -8.344 12.625 1 24.69 ? CAI DG7 362 A 1 HETATM 10 C CAJ DG7 . . . C 3 -18.905 -5.938 12.779 1 24.37 ? CAJ DG7 362 A 1 HETATM 11 C CAK DG7 . . . C 3 -18.235 -8.424 13.854 1 22.98 ? CAK DG7 362 A 1 HETATM 12 C CAL DG7 . . . C 3 -18.236 -6.016 14.004 1 22.88 ? CAL DG7 362 A 1 HETATM 13 C CAM DG7 . . . C 3 -22.808 1.416 24.287 1 33.13 ? CAM DG7 362 A 1 HETATM 14 C CAN DG7 . . . C 3 -21.298 -2.39 20.836 1 26.91 ? CAN DG7 362 A 1 HETATM 15 C CAO DG7 . . . C 3 -16.802 -7.16 17.836 1 20.78 ? CAO DG7 362 A 1 HETATM 16 C CAP DG7 . . . C 3 -23.644 -0.38 19.872 1 30.03 ? CAP DG7 362 A 1 HETATM 17 C CAQ DG7 . . . C 3 -23.673 -1.887 20.145 1 27.46 ? CAQ DG7 362 A 1 HETATM 18 C CAR DG7 . . . C 3 -23.35 0.515 22.093 1 32.39 ? CAR DG7 362 A 1 HETATM 19 N NAS DG7 . . . C 3 -22.36 2.407 25.054 1 33.62 ? NAS DG7 362 A 1 HETATM 20 N NAT DG7 . . . C 3 -21.996 -3.299 18.872 1 25.36 ? NAT DG7 362 A 1 HETATM 21 N NAU DG7 . . . C 3 -16.247 -8.028 15.914 1 18.51 ? NAU DG7 362 A 1 HETATM 22 N NAV DG7 . . . C 3 -18.775 -6.037 17.013 1 21.27 ? NAV DG7 362 A 1 HETATM 23 N NAW DG7 . . . C 3 -20.259 -4.589 17.91 1 22.55 ? NAW DG7 362 A 1 HETATM 24 O OAX DG7 . . . C 3 -22.786 0.319 20.795 1 29.95 ? OAX DG7 362 A 1 HETATM 25 S SAY DG7 . . . C 3 -19.971 -3.266 20.268 1 26.05 ? SAY DG7 362 A 1 HETATM 26 C CAZ DG7 . . . C 3 -19.059 -5.176 17.994 1 21.18 ? CAZ DG7 362 A 1 HETATM 27 C CBA DG7 . . . C 3 -19.235 -7.1 12.087 1 24.07 ? CBA DG7 362 A 1 HETATM 28 C CBB DG7 . . . C 3 -22.872 1.56 22.898 1 33.36 ? CBB DG7 362 A 1 HETATM 29 C CBC DG7 . . . C 3 -22.3 -2.532 19.946 1 27.14 ? CBC DG7 362 A 1 HETATM 30 C CBD DG7 . . . C 3 -17.902 -7.254 14.549 1 21.73 ? CBD DG7 362 A 1 HETATM 31 C CBE DG7 . . . C 3 -17.663 -6.784 16.869 1 21.54 ? CBE DG7 362 A 1 HETATM 32 C CBF DG7 . . . C 3 -15.902 -7.922 17.202 1 20.98 ? CBF DG7 362 A 1 HETATM 33 C CBG DG7 . . . C 3 -20.746 -3.772 18.848 1 24.41 ? CBG DG7 362 A 1 HETATM 34 N NBH DG7 . . . C 3 -17.273 -7.358 15.727 1 20.95 ? NBH DG7 362 A 1 HETATM 35 C CBI DG7 . . . C 3 -14.667 -8.615 17.853 1 22.27 ? CBI DG7 362 A 1 # _model_server_stats.io_time_ms 51 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 258 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 35 #