data_3PG7
#
_model_server_result.job_id            E2uHrJFSPg02iXtAqdf2kg 
_model_server_result.datetime_utc      '2024-11-28 04:35:19' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3pg7 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":601}' 
#
_entry.id    3PG7 
#
_exptl.entry_id    3PG7 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              175.959 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PYROPHOSPHATE 2-' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3PG7 
_cell.length_a            113.44 
_cell.length_b            113.44 
_cell.length_c            124.49 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3PG7 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        92 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 41 21 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,G 1 1 
B,D,E,F,H 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 E N N 
? 3 F N N 
#
_struct_conn.conn_type_id                   disulf 
_struct_conn.details                        ? 
_struct_conn.id                             disulf1 
_struct_conn.ptnr1_label_asym_id            B 
_struct_conn.ptnr1_label_atom_id            SG 
_struct_conn.ptnr1_label_comp_id            CYS 
_struct_conn.ptnr1_label_seq_id             211 
_struct_conn.ptnr1_auth_asym_id             B 
_struct_conn.ptnr1_auth_comp_id             CYS 
_struct_conn.ptnr1_auth_seq_id              1770 
_struct_conn.ptnr1_symmetry                 1_555 
_struct_conn.ptnr2_label_asym_id            B 
_struct_conn.ptnr2_label_atom_id            SG 
_struct_conn.ptnr2_label_comp_id            CYS 
_struct_conn.ptnr2_label_seq_id             211 
_struct_conn.ptnr2_auth_asym_id             B 
_struct_conn.ptnr2_auth_comp_id             CYS 
_struct_conn.ptnr2_auth_seq_id              1770 
_struct_conn.ptnr2_symmetry                 7_555 
_struct_conn.pdbx_ptnr1_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr1_label_alt_id        ? 
_struct_conn.pdbx_ptnr1_standard_comp_id    ? 
_struct_conn.pdbx_ptnr2_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr2_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr3_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_label_asym_id       ? 
_struct_conn.pdbx_ptnr3_label_atom_id       ? 
_struct_conn.pdbx_ptnr3_label_comp_id       ? 
_struct_conn.pdbx_ptnr3_label_seq_id        ? 
_struct_conn.pdbx_PDB_id                    ? 
_struct_conn.pdbx_dist_value                2.039 
_struct_conn.pdbx_value_order               ? 
#
_chem_comp.formula           'H2 O7 P2 -2' 
_chem_comp.formula_weight    175.959 
_chem_comp.id                POP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PYROPHOSPHATE 2-' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
P1 O1 POP doub 260 n n 
P1 O2 POP sing 261 n n 
P1 O3 POP sing 262 n n 
P1 O POP sing 263 n n 
O2 HO2 POP sing 264 n n 
O P2 POP sing 265 n n 
P2 O4 POP doub 266 n n 
P2 O5 POP sing 267 n n 
P2 O6 POP sing 268 n n 
O5 HO5 POP sing 269 n n 
#
_atom_sites.entry_id                     3PG7 
_atom_sites.fract_transf_matrix[1][1]    0.008815 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008815 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008033 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 PTY A 1 400 400 PTY PTY . 
D 2 PTY B 1 500 500 PTY PTY . 
E 3 POP B 1 601 601 POP POP . 
F 3 POP B 1 602 602 POP POP . 
G 4 HOH A 1 6 6 HOH HOH . 
G 4 HOH A 2 8 8 HOH HOH . 
G 4 HOH A 3 9 9 HOH HOH . 
G 4 HOH A 4 10 10 HOH HOH . 
G 4 HOH A 5 12 12 HOH HOH . 
G 4 HOH A 6 14 14 HOH HOH . 
G 4 HOH A 7 15 15 HOH HOH . 
G 4 HOH A 8 16 16 HOH HOH . 
G 4 HOH A 9 21 21 HOH HOH . 
G 4 HOH A 10 22 22 HOH HOH . 
G 4 HOH A 11 26 26 HOH HOH . 
G 4 HOH A 12 27 27 HOH HOH . 
G 4 HOH A 13 29 29 HOH HOH . 
G 4 HOH A 14 30 30 HOH HOH . 
G 4 HOH A 15 31 31 HOH HOH . 
G 4 HOH A 16 38 38 HOH HOH . 
G 4 HOH A 17 40 40 HOH HOH . 
G 4 HOH A 18 42 42 HOH HOH . 
G 4 HOH A 19 45 45 HOH HOH . 
G 4 HOH A 20 47 47 HOH HOH . 
G 4 HOH A 21 48 48 HOH HOH . 
G 4 HOH A 22 51 51 HOH HOH . 
G 4 HOH A 23 53 53 HOH HOH . 
G 4 HOH A 24 55 55 HOH HOH . 
G 4 HOH A 25 59 59 HOH HOH . 
G 4 HOH A 26 64 64 HOH HOH . 
G 4 HOH A 27 65 65 HOH HOH . 
G 4 HOH A 28 70 70 HOH HOH . 
G 4 HOH A 29 73 73 HOH HOH . 
G 4 HOH A 30 74 74 HOH HOH . 
G 4 HOH A 31 76 76 HOH HOH . 
G 4 HOH A 32 82 82 HOH HOH . 
G 4 HOH A 33 83 83 HOH HOH . 
G 4 HOH A 34 86 86 HOH HOH . 
G 4 HOH A 35 88 88 HOH HOH . 
G 4 HOH A 36 89 89 HOH HOH . 
G 4 HOH A 37 94 94 HOH HOH . 
G 4 HOH A 38 96 96 HOH HOH . 
G 4 HOH A 39 97 97 HOH HOH . 
G 4 HOH A 40 98 98 HOH HOH . 
G 4 HOH A 41 100 100 HOH HOH . 
G 4 HOH A 42 102 102 HOH HOH . 
G 4 HOH A 43 103 103 HOH HOH . 
G 4 HOH A 44 104 104 HOH HOH . 
G 4 HOH A 45 105 105 HOH HOH . 
G 4 HOH A 46 108 108 HOH HOH . 
G 4 HOH A 47 121 121 HOH HOH . 
G 4 HOH A 48 123 123 HOH HOH . 
G 4 HOH A 49 125 125 HOH HOH . 
G 4 HOH A 50 126 126 HOH HOH . 
G 4 HOH A 51 128 128 HOH HOH . 
G 4 HOH A 52 135 135 HOH HOH . 
G 4 HOH A 53 138 138 HOH HOH . 
G 4 HOH A 54 139 139 HOH HOH . 
G 4 HOH A 55 142 142 HOH HOH . 
G 4 HOH A 56 144 144 HOH HOH . 
G 4 HOH A 57 146 146 HOH HOH . 
G 4 HOH A 58 147 147 HOH HOH . 
G 4 HOH A 59 149 149 HOH HOH . 
G 4 HOH A 60 150 150 HOH HOH . 
G 4 HOH A 61 151 151 HOH HOH . 
G 4 HOH A 62 152 152 HOH HOH . 
G 4 HOH A 63 154 154 HOH HOH . 
G 4 HOH A 64 158 158 HOH HOH . 
G 4 HOH A 65 168 168 HOH HOH . 
G 4 HOH A 66 171 171 HOH HOH . 
G 4 HOH A 67 179 179 HOH HOH . 
G 4 HOH A 68 180 180 HOH HOH . 
G 4 HOH A 69 182 182 HOH HOH . 
G 4 HOH A 70 189 189 HOH HOH . 
G 4 HOH A 71 191 191 HOH HOH . 
G 4 HOH A 72 192 192 HOH HOH . 
G 4 HOH A 73 194 194 HOH HOH . 
G 4 HOH A 74 195 195 HOH HOH . 
G 4 HOH A 75 196 196 HOH HOH . 
G 4 HOH A 76 197 197 HOH HOH . 
G 4 HOH A 77 198 198 HOH HOH . 
G 4 HOH A 78 199 199 HOH HOH . 
G 4 HOH A 79 203 203 HOH HOH . 
G 4 HOH A 80 204 204 HOH HOH . 
G 4 HOH A 81 205 205 HOH HOH . 
G 4 HOH A 82 206 206 HOH HOH . 
G 4 HOH A 83 208 208 HOH HOH . 
G 4 HOH A 84 211 211 HOH HOH . 
G 4 HOH A 85 213 213 HOH HOH . 
G 4 HOH A 86 214 214 HOH HOH . 
G 4 HOH A 87 215 215 HOH HOH . 
G 4 HOH A 88 216 216 HOH HOH . 
G 4 HOH A 89 218 218 HOH HOH . 
G 4 HOH A 90 220 220 HOH HOH . 
G 4 HOH A 91 221 221 HOH HOH . 
G 4 HOH A 92 223 223 HOH HOH . 
G 4 HOH A 93 227 227 HOH HOH . 
G 4 HOH A 94 228 228 HOH HOH . 
G 4 HOH A 95 229 229 HOH HOH . 
G 4 HOH A 96 230 230 HOH HOH . 
G 4 HOH A 97 235 235 HOH HOH . 
G 4 HOH A 98 241 241 HOH HOH . 
H 4 HOH B 1 1 1 HOH HOH . 
H 4 HOH B 2 2 2 HOH HOH . 
H 4 HOH B 3 3 3 HOH HOH . 
H 4 HOH B 4 4 4 HOH HOH . 
H 4 HOH B 5 5 5 HOH HOH . 
H 4 HOH B 6 7 7 HOH HOH . 
H 4 HOH B 7 11 11 HOH HOH . 
H 4 HOH B 8 13 13 HOH HOH . 
H 4 HOH B 9 17 17 HOH HOH . 
H 4 HOH B 10 18 18 HOH HOH . 
H 4 HOH B 11 19 19 HOH HOH . 
H 4 HOH B 12 20 20 HOH HOH . 
H 4 HOH B 13 23 23 HOH HOH . 
H 4 HOH B 14 24 24 HOH HOH . 
H 4 HOH B 15 25 25 HOH HOH . 
H 4 HOH B 16 28 28 HOH HOH . 
H 4 HOH B 17 32 32 HOH HOH . 
H 4 HOH B 18 33 33 HOH HOH . 
H 4 HOH B 19 34 34 HOH HOH . 
H 4 HOH B 20 35 35 HOH HOH . 
H 4 HOH B 21 36 36 HOH HOH . 
H 4 HOH B 22 37 37 HOH HOH . 
H 4 HOH B 23 39 39 HOH HOH . 
H 4 HOH B 24 41 41 HOH HOH . 
H 4 HOH B 25 43 43 HOH HOH . 
H 4 HOH B 26 44 44 HOH HOH . 
H 4 HOH B 27 46 46 HOH HOH . 
H 4 HOH B 28 49 49 HOH HOH . 
H 4 HOH B 29 50 50 HOH HOH . 
H 4 HOH B 30 52 52 HOH HOH . 
H 4 HOH B 31 54 54 HOH HOH . 
H 4 HOH B 32 56 56 HOH HOH . 
H 4 HOH B 33 57 57 HOH HOH . 
H 4 HOH B 34 58 58 HOH HOH . 
H 4 HOH B 35 60 60 HOH HOH . 
H 4 HOH B 36 61 61 HOH HOH . 
H 4 HOH B 37 62 62 HOH HOH . 
H 4 HOH B 38 63 63 HOH HOH . 
H 4 HOH B 39 66 66 HOH HOH . 
H 4 HOH B 40 67 67 HOH HOH . 
H 4 HOH B 41 68 68 HOH HOH . 
H 4 HOH B 42 69 69 HOH HOH . 
H 4 HOH B 43 71 71 HOH HOH . 
H 4 HOH B 44 72 72 HOH HOH . 
H 4 HOH B 45 75 75 HOH HOH . 
H 4 HOH B 46 77 77 HOH HOH . 
H 4 HOH B 47 78 78 HOH HOH . 
H 4 HOH B 48 79 79 HOH HOH . 
H 4 HOH B 49 80 80 HOH HOH . 
H 4 HOH B 50 81 81 HOH HOH . 
H 4 HOH B 51 84 84 HOH HOH . 
H 4 HOH B 52 85 85 HOH HOH . 
H 4 HOH B 53 87 87 HOH HOH . 
H 4 HOH B 54 90 90 HOH HOH . 
H 4 HOH B 55 91 91 HOH HOH . 
H 4 HOH B 56 92 92 HOH HOH . 
H 4 HOH B 57 93 93 HOH HOH . 
H 4 HOH B 58 95 95 HOH HOH . 
H 4 HOH B 59 99 99 HOH HOH . 
H 4 HOH B 60 101 101 HOH HOH . 
H 4 HOH B 61 106 106 HOH HOH . 
H 4 HOH B 62 107 107 HOH HOH . 
H 4 HOH B 63 109 109 HOH HOH . 
H 4 HOH B 64 110 110 HOH HOH . 
H 4 HOH B 65 111 111 HOH HOH . 
H 4 HOH B 66 112 112 HOH HOH . 
H 4 HOH B 67 113 113 HOH HOH . 
H 4 HOH B 68 114 114 HOH HOH . 
H 4 HOH B 69 115 115 HOH HOH . 
H 4 HOH B 70 116 116 HOH HOH . 
H 4 HOH B 71 117 117 HOH HOH . 
H 4 HOH B 72 118 118 HOH HOH . 
H 4 HOH B 73 119 119 HOH HOH . 
H 4 HOH B 74 120 120 HOH HOH . 
H 4 HOH B 75 122 122 HOH HOH . 
H 4 HOH B 76 124 124 HOH HOH . 
H 4 HOH B 77 127 127 HOH HOH . 
H 4 HOH B 78 129 129 HOH HOH . 
H 4 HOH B 79 130 130 HOH HOH . 
H 4 HOH B 80 131 131 HOH HOH . 
H 4 HOH B 81 132 132 HOH HOH . 
H 4 HOH B 82 133 133 HOH HOH . 
H 4 HOH B 83 134 134 HOH HOH . 
H 4 HOH B 84 136 136 HOH HOH . 
H 4 HOH B 85 137 137 HOH HOH . 
H 4 HOH B 86 140 140 HOH HOH . 
H 4 HOH B 87 141 141 HOH HOH . 
H 4 HOH B 88 143 143 HOH HOH . 
H 4 HOH B 89 145 145 HOH HOH . 
H 4 HOH B 90 148 148 HOH HOH . 
H 4 HOH B 91 153 153 HOH HOH . 
H 4 HOH B 92 155 155 HOH HOH . 
H 4 HOH B 93 156 156 HOH HOH . 
H 4 HOH B 94 157 157 HOH HOH . 
H 4 HOH B 95 159 159 HOH HOH . 
H 4 HOH B 96 160 160 HOH HOH . 
H 4 HOH B 97 161 161 HOH HOH . 
H 4 HOH B 98 162 162 HOH HOH . 
H 4 HOH B 99 163 163 HOH HOH . 
H 4 HOH B 100 164 164 HOH HOH . 
H 4 HOH B 101 165 165 HOH HOH . 
H 4 HOH B 102 166 166 HOH HOH . 
H 4 HOH B 103 167 167 HOH HOH . 
H 4 HOH B 104 169 169 HOH HOH . 
H 4 HOH B 105 170 170 HOH HOH . 
H 4 HOH B 106 172 172 HOH HOH . 
H 4 HOH B 107 173 173 HOH HOH . 
H 4 HOH B 108 174 174 HOH HOH . 
H 4 HOH B 109 175 175 HOH HOH . 
H 4 HOH B 110 176 176 HOH HOH . 
H 4 HOH B 111 177 177 HOH HOH . 
H 4 HOH B 112 178 178 HOH HOH . 
H 4 HOH B 113 181 181 HOH HOH . 
H 4 HOH B 114 183 183 HOH HOH . 
H 4 HOH B 115 184 184 HOH HOH . 
H 4 HOH B 116 185 185 HOH HOH . 
H 4 HOH B 117 186 186 HOH HOH . 
H 4 HOH B 118 187 187 HOH HOH . 
H 4 HOH B 119 188 188 HOH HOH . 
H 4 HOH B 120 190 190 HOH HOH . 
H 4 HOH B 121 193 193 HOH HOH . 
H 4 HOH B 122 200 200 HOH HOH . 
H 4 HOH B 123 201 201 HOH HOH . 
H 4 HOH B 124 202 202 HOH HOH . 
H 4 HOH B 125 207 207 HOH HOH . 
H 4 HOH B 126 209 209 HOH HOH . 
H 4 HOH B 127 210 210 HOH HOH . 
H 4 HOH B 128 212 212 HOH HOH . 
H 4 HOH B 129 217 217 HOH HOH . 
H 4 HOH B 130 219 219 HOH HOH . 
H 4 HOH B 131 222 222 HOH HOH . 
H 4 HOH B 132 224 224 HOH HOH . 
H 4 HOH B 133 225 225 HOH HOH . 
H 4 HOH B 134 226 226 HOH HOH . 
H 4 HOH B 135 231 231 HOH HOH . 
H 4 HOH B 136 232 232 HOH HOH . 
H 4 HOH B 137 233 233 HOH HOH . 
H 4 HOH B 138 234 234 HOH HOH . 
H 4 HOH B 139 236 236 HOH HOH . 
H 4 HOH B 140 237 237 HOH HOH . 
H 4 HOH B 141 238 238 HOH HOH . 
H 4 HOH B 142 239 239 HOH HOH . 
H 4 HOH B 143 240 240 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P P1 POP . . . E 3 -21.361 -26.619 -25.389 1 93.4 ? P1 POP 601 B 1 
HETATM 2 O O1 POP . . . E 3 -22.195 -26.493 -24.136 1 89.79 ? O1 POP 601 B 1 
HETATM 3 O O2 POP . . . E 3 -22.263 -26.633 -26.602 1 79.18 ? O2 POP 601 B 1 
HETATM 4 O O3 POP . . . E 3 -20.54 -27.886 -25.314 1 94.64 ? O3 POP 601 B 1 
HETATM 5 O O POP . . . E 3 -20.366 -25.353 -25.456 1 113.81 ? O POP 601 B 1 
HETATM 6 P P2 POP . . . E 3 -20.09 -24.46 -24.142 1 124.23 ? P2 POP 601 B 1 
HETATM 7 O O4 POP . . . E 3 -20.06 -25.378 -22.943 1 127.46 ? O4 POP 601 B 1 
HETATM 8 O O5 POP . . . E 3 -18.749 -23.78 -24.27 1 122.54 ? O5 POP 601 B 1 
HETATM 9 O O6 POP . . . E 3 -21.181 -23.429 -23.974 1 121.1 ? O6 POP 601 B 1 
#
_model_server_stats.io_time_ms              72 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           342 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           9 
#