data_3PG8 # _model_server_result.job_id 1nT3n-mjUi_OdYidbSnANA _model_server_result.datetime_utc '2024-11-14 06:49:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3pg8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":7}' # _entry.id 3PG8 # _exptl.entry_id 3PG8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3PG8 _cell.length_a 53.51 _cell.length_b 55.456 _cell.length_c 166.935 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3PG8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 F N N ? 2 G N N ? 2 H N N ? 2 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C PRO 35 A PRO 101 1_555 A N CSD 36 A CSD 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale2 A C CSD 36 A CSD 102 1_555 A N SER 37 A SER 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale3 B C PRO 35 B PRO 101 1_555 B N CSD 36 B CSD 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale4 B C CSD 36 B CSD 102 1_555 B N SER 37 B SER 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 146 n n C1 C2 GOL sing 147 n n C1 H11 GOL sing 148 n n C1 H12 GOL sing 149 n n O1 HO1 GOL sing 150 n n C2 O2 GOL sing 151 n n C2 C3 GOL sing 152 n n C2 H2 GOL sing 153 n n O2 HO2 GOL sing 154 n n C3 O3 GOL sing 155 n n C3 H31 GOL sing 156 n n C3 H32 GOL sing 157 n n O3 HO3 GOL sing 158 n n # _atom_sites.entry_id 3PG8 _atom_sites.fract_transf_matrix[1][1] 0.018688 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018032 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00599 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GOL A 1 1 1 GOL GOL . D 2 GOL A 1 3 3 GOL GOL . E 3 AZI A 1 6 6 AZI AZI . F 2 GOL A 1 7 7 GOL GOL . G 2 GOL B 1 2 2 GOL GOL . H 2 GOL B 1 5 5 GOL GOL . I 2 GOL B 1 8 8 GOL GOL . J 4 HOH A 1 2 2 HOH HOH . J 4 HOH A 2 4 4 HOH HOH . J 4 HOH A 3 9 9 HOH HOH . J 4 HOH A 4 11 11 HOH HOH . J 4 HOH A 5 17 17 HOH HOH . J 4 HOH A 6 19 19 HOH HOH . J 4 HOH A 7 20 20 HOH HOH . J 4 HOH A 8 22 22 HOH HOH . J 4 HOH A 9 23 23 HOH HOH . J 4 HOH A 10 24 24 HOH HOH . J 4 HOH A 11 25 25 HOH HOH . J 4 HOH A 12 27 27 HOH HOH . J 4 HOH A 13 28 28 HOH HOH . J 4 HOH A 14 29 29 HOH HOH . J 4 HOH A 15 30 30 HOH HOH . J 4 HOH A 16 31 31 HOH HOH . J 4 HOH A 17 35 35 HOH HOH . J 4 HOH A 18 36 36 HOH HOH . J 4 HOH A 19 37 37 HOH HOH . J 4 HOH A 20 39 39 HOH HOH . J 4 HOH A 21 41 41 HOH HOH . J 4 HOH A 22 42 42 HOH HOH . J 4 HOH A 23 43 43 HOH HOH . J 4 HOH A 24 45 45 HOH HOH . J 4 HOH A 25 46 46 HOH HOH . J 4 HOH A 26 47 47 HOH HOH . J 4 HOH A 27 48 48 HOH HOH . J 4 HOH A 28 50 50 HOH HOH . J 4 HOH A 29 52 52 HOH HOH . J 4 HOH A 30 54 54 HOH HOH . J 4 HOH A 31 55 55 HOH HOH . J 4 HOH A 32 56 56 HOH HOH . J 4 HOH A 33 60 60 HOH HOH . J 4 HOH A 34 61 61 HOH HOH . J 4 HOH A 35 62 62 HOH HOH . J 4 HOH A 36 65 65 HOH HOH . J 4 HOH A 37 339 7 HOH HOH . J 4 HOH A 38 340 68 HOH HOH . J 4 HOH A 39 341 71 HOH HOH . J 4 HOH A 40 342 72 HOH HOH . J 4 HOH A 41 343 73 HOH HOH . J 4 HOH A 42 344 79 HOH HOH . J 4 HOH A 43 345 82 HOH HOH . J 4 HOH A 44 346 85 HOH HOH . J 4 HOH A 45 347 86 HOH HOH . J 4 HOH A 46 348 87 HOH HOH . J 4 HOH A 47 349 91 HOH HOH . J 4 HOH A 48 350 92 HOH HOH . J 4 HOH A 49 351 94 HOH HOH . J 4 HOH A 50 352 98 HOH HOH . J 4 HOH A 51 353 99 HOH HOH . J 4 HOH A 52 354 101 HOH HOH . J 4 HOH A 53 355 109 HOH HOH . J 4 HOH A 54 356 113 HOH HOH . J 4 HOH A 55 357 114 HOH HOH . J 4 HOH A 56 358 115 HOH HOH . J 4 HOH A 57 359 117 HOH HOH . J 4 HOH A 58 360 119 HOH HOH . J 4 HOH A 59 361 120 HOH HOH . J 4 HOH A 60 362 127 HOH HOH . J 4 HOH A 61 363 128 HOH HOH . J 4 HOH A 62 364 135 HOH HOH . J 4 HOH A 63 365 139 HOH HOH . J 4 HOH A 64 366 145 HOH HOH . J 4 HOH A 65 367 148 HOH HOH . J 4 HOH A 66 368 149 HOH HOH . J 4 HOH A 67 369 152 HOH HOH . J 4 HOH A 68 370 153 HOH HOH . J 4 HOH A 69 371 155 HOH HOH . J 4 HOH A 70 372 156 HOH HOH . J 4 HOH A 71 373 158 HOH HOH . J 4 HOH A 72 374 160 HOH HOH . J 4 HOH A 73 375 164 HOH HOH . J 4 HOH A 74 376 167 HOH HOH . J 4 HOH A 75 377 169 HOH HOH . J 4 HOH A 76 378 170 HOH HOH . J 4 HOH A 77 379 172 HOH HOH . J 4 HOH A 78 380 173 HOH HOH . J 4 HOH A 79 381 178 HOH HOH . J 4 HOH A 80 382 180 HOH HOH . J 4 HOH A 81 383 181 HOH HOH . J 4 HOH A 82 384 182 HOH HOH . J 4 HOH A 83 385 183 HOH HOH . J 4 HOH A 84 386 184 HOH HOH . J 4 HOH A 85 387 185 HOH HOH . J 4 HOH A 86 388 187 HOH HOH . J 4 HOH A 87 389 188 HOH HOH . J 4 HOH A 88 390 190 HOH HOH . J 4 HOH A 89 392 198 HOH HOH . J 4 HOH A 90 393 199 HOH HOH . J 4 HOH A 91 394 200 HOH HOH . J 4 HOH A 92 395 201 HOH HOH . J 4 HOH A 93 396 206 HOH HOH . J 4 HOH A 94 397 208 HOH HOH . J 4 HOH A 95 398 209 HOH HOH . J 4 HOH A 96 399 211 HOH HOH . J 4 HOH A 97 400 212 HOH HOH . J 4 HOH A 98 401 219 HOH HOH . J 4 HOH A 99 402 220 HOH HOH . J 4 HOH A 100 403 221 HOH HOH . J 4 HOH A 101 404 223 HOH HOH . J 4 HOH A 102 405 226 HOH HOH . J 4 HOH A 103 406 227 HOH HOH . J 4 HOH A 104 407 228 HOH HOH . J 4 HOH A 105 408 229 HOH HOH . J 4 HOH A 106 409 230 HOH HOH . J 4 HOH A 107 410 231 HOH HOH . J 4 HOH A 108 411 233 HOH HOH . J 4 HOH A 109 412 237 HOH HOH . J 4 HOH A 110 413 242 HOH HOH . J 4 HOH A 111 414 243 HOH HOH . J 4 HOH A 112 415 249 HOH HOH . J 4 HOH A 113 416 250 HOH HOH . K 4 HOH B 1 1 1 HOH HOH . K 4 HOH B 2 3 3 HOH HOH . K 4 HOH B 3 6 6 HOH HOH . K 4 HOH B 4 10 10 HOH HOH . K 4 HOH B 5 12 12 HOH HOH . K 4 HOH B 6 13 13 HOH HOH . K 4 HOH B 7 14 14 HOH HOH . K 4 HOH B 8 15 15 HOH HOH . K 4 HOH B 9 16 16 HOH HOH . K 4 HOH B 10 18 18 HOH HOH . K 4 HOH B 11 21 21 HOH HOH . K 4 HOH B 12 26 26 HOH HOH . K 4 HOH B 13 32 32 HOH HOH . K 4 HOH B 14 33 33 HOH HOH . K 4 HOH B 15 34 34 HOH HOH . K 4 HOH B 16 38 38 HOH HOH . K 4 HOH B 17 40 40 HOH HOH . K 4 HOH B 18 44 44 HOH HOH . K 4 HOH B 19 49 49 HOH HOH . K 4 HOH B 20 51 51 HOH HOH . K 4 HOH B 21 53 53 HOH HOH . K 4 HOH B 22 57 57 HOH HOH . K 4 HOH B 23 58 58 HOH HOH . K 4 HOH B 24 59 59 HOH HOH . K 4 HOH B 25 63 63 HOH HOH . K 4 HOH B 26 64 64 HOH HOH . K 4 HOH B 27 66 66 HOH HOH . K 4 HOH B 28 339 5 HOH HOH . K 4 HOH B 29 340 8 HOH HOH . K 4 HOH B 30 341 67 HOH HOH . K 4 HOH B 31 342 70 HOH HOH . K 4 HOH B 32 343 75 HOH HOH . K 4 HOH B 33 344 76 HOH HOH . K 4 HOH B 34 345 77 HOH HOH . K 4 HOH B 35 346 78 HOH HOH . K 4 HOH B 36 347 80 HOH HOH . K 4 HOH B 37 348 81 HOH HOH . K 4 HOH B 38 349 83 HOH HOH . K 4 HOH B 39 350 84 HOH HOH . K 4 HOH B 40 351 88 HOH HOH . K 4 HOH B 41 352 89 HOH HOH . K 4 HOH B 42 353 90 HOH HOH . K 4 HOH B 43 354 93 HOH HOH . K 4 HOH B 44 355 95 HOH HOH . K 4 HOH B 45 356 96 HOH HOH . K 4 HOH B 46 357 97 HOH HOH . K 4 HOH B 47 358 103 HOH HOH . K 4 HOH B 48 359 105 HOH HOH . K 4 HOH B 49 360 106 HOH HOH . K 4 HOH B 50 361 107 HOH HOH . K 4 HOH B 51 362 108 HOH HOH . K 4 HOH B 52 363 110 HOH HOH . K 4 HOH B 53 364 111 HOH HOH . K 4 HOH B 54 365 112 HOH HOH . K 4 HOH B 55 366 116 HOH HOH . K 4 HOH B 56 367 118 HOH HOH . K 4 HOH B 57 368 121 HOH HOH . K 4 HOH B 58 369 122 HOH HOH . K 4 HOH B 59 370 124 HOH HOH . K 4 HOH B 60 371 125 HOH HOH . K 4 HOH B 61 372 126 HOH HOH . K 4 HOH B 62 373 129 HOH HOH . K 4 HOH B 63 374 130 HOH HOH . K 4 HOH B 64 375 131 HOH HOH . K 4 HOH B 65 376 132 HOH HOH . K 4 HOH B 66 377 133 HOH HOH . K 4 HOH B 67 378 134 HOH HOH . K 4 HOH B 68 379 136 HOH HOH . K 4 HOH B 69 380 137 HOH HOH . K 4 HOH B 70 381 138 HOH HOH . K 4 HOH B 71 382 140 HOH HOH . K 4 HOH B 72 383 141 HOH HOH . K 4 HOH B 73 384 142 HOH HOH . K 4 HOH B 74 385 143 HOH HOH . K 4 HOH B 75 386 144 HOH HOH . K 4 HOH B 76 387 146 HOH HOH . K 4 HOH B 77 388 147 HOH HOH . K 4 HOH B 78 389 150 HOH HOH . K 4 HOH B 79 390 151 HOH HOH . K 4 HOH B 80 391 197 HOH HOH . K 4 HOH B 81 392 157 HOH HOH . K 4 HOH B 82 393 159 HOH HOH . K 4 HOH B 83 394 161 HOH HOH . K 4 HOH B 84 395 162 HOH HOH . K 4 HOH B 85 396 163 HOH HOH . K 4 HOH B 86 397 165 HOH HOH . K 4 HOH B 87 398 166 HOH HOH . K 4 HOH B 88 399 168 HOH HOH . K 4 HOH B 89 400 171 HOH HOH . K 4 HOH B 90 401 174 HOH HOH . K 4 HOH B 91 402 175 HOH HOH . K 4 HOH B 92 403 176 HOH HOH . K 4 HOH B 93 404 177 HOH HOH . K 4 HOH B 94 405 191 HOH HOH . K 4 HOH B 95 406 192 HOH HOH . K 4 HOH B 96 407 193 HOH HOH . K 4 HOH B 97 408 195 HOH HOH . K 4 HOH B 98 409 196 HOH HOH . K 4 HOH B 99 410 202 HOH HOH . K 4 HOH B 100 411 203 HOH HOH . K 4 HOH B 101 412 204 HOH HOH . K 4 HOH B 102 413 205 HOH HOH . K 4 HOH B 103 414 207 HOH HOH . K 4 HOH B 104 415 213 HOH HOH . K 4 HOH B 105 416 214 HOH HOH . K 4 HOH B 106 417 215 HOH HOH . K 4 HOH B 107 418 216 HOH HOH . K 4 HOH B 108 419 217 HOH HOH . K 4 HOH B 109 420 218 HOH HOH . K 4 HOH B 110 421 222 HOH HOH . K 4 HOH B 111 422 224 HOH HOH . K 4 HOH B 112 423 225 HOH HOH . K 4 HOH B 113 424 234 HOH HOH . K 4 HOH B 114 425 235 HOH HOH . K 4 HOH B 115 426 236 HOH HOH . K 4 HOH B 116 427 238 HOH HOH . K 4 HOH B 117 428 239 HOH HOH . K 4 HOH B 118 429 240 HOH HOH . K 4 HOH B 119 430 241 HOH HOH . K 4 HOH B 120 431 244 HOH HOH . K 4 HOH B 121 432 245 HOH HOH . K 4 HOH B 122 433 246 HOH HOH . K 4 HOH B 123 434 247 HOH HOH . K 4 HOH B 124 435 248 HOH HOH . K 4 HOH B 125 436 154 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . F 2 25.835 -20.061 -33.237 1 54.81 ? C1 GOL 7 A 1 HETATM 2 O O1 GOL . . . F 2 25.769 -21.439 -33.543 1 51.1 ? O1 GOL 7 A 1 HETATM 3 C C2 GOL . . . F 2 26.541 -19.826 -31.904 1 51.14 ? C2 GOL 7 A 1 HETATM 4 O O2 GOL . . . F 2 25.707 -19.008 -31.096 1 47.51 ? O2 GOL 7 A 1 HETATM 5 C C3 GOL . . . F 2 27.853 -19.093 -32.181 1 57.26 ? C3 GOL 7 A 1 HETATM 6 O O3 GOL . . . F 2 28.889 -19.567 -31.346 1 52.53 ? O3 GOL 7 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 272 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 6 #