data_3PG8
#
_model_server_result.job_id            z2j6eAoT4ar78c5l2CMFFg 
_model_server_result.datetime_utc      '2024-11-14 06:44:37' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3pg8 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":8}' 
#
_entry.id    3PG8 
#
_exptl.entry_id    3PG8 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3PG8 
_cell.length_a            53.51 
_cell.length_b            55.456 
_cell.length_c            166.935 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3PG8 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
? 2 F N N 
? 2 G N N 
? 2 H N N 
? 2 I N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C PRO 35 A PRO 101 1_555 A N CSD 36 A CSD 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? 
covale ? covale2 A C CSD 36 A CSD 102 1_555 A N SER 37 A SER 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? 
covale ? covale3 B C PRO 35 B PRO 101 1_555 B N CSD 36 B CSD 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale4 B C CSD 36 B CSD 102 1_555 B N SER 37 B SER 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 146 n n 
C1 C2 GOL sing 147 n n 
C1 H11 GOL sing 148 n n 
C1 H12 GOL sing 149 n n 
O1 HO1 GOL sing 150 n n 
C2 O2 GOL sing 151 n n 
C2 C3 GOL sing 152 n n 
C2 H2 GOL sing 153 n n 
O2 HO2 GOL sing 154 n n 
C3 O3 GOL sing 155 n n 
C3 H31 GOL sing 156 n n 
C3 H32 GOL sing 157 n n 
O3 HO3 GOL sing 158 n n 
#
_atom_sites.entry_id                     3PG8 
_atom_sites.fract_transf_matrix[1][1]    0.018688 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.018032 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00599 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 GOL A 1 1 1 GOL GOL . 
D 2 GOL A 1 3 3 GOL GOL . 
E 3 AZI A 1 6 6 AZI AZI . 
F 2 GOL A 1 7 7 GOL GOL . 
G 2 GOL B 1 2 2 GOL GOL . 
H 2 GOL B 1 5 5 GOL GOL . 
I 2 GOL B 1 8 8 GOL GOL . 
J 4 HOH A 1 2 2 HOH HOH . 
J 4 HOH A 2 4 4 HOH HOH . 
J 4 HOH A 3 9 9 HOH HOH . 
J 4 HOH A 4 11 11 HOH HOH . 
J 4 HOH A 5 17 17 HOH HOH . 
J 4 HOH A 6 19 19 HOH HOH . 
J 4 HOH A 7 20 20 HOH HOH . 
J 4 HOH A 8 22 22 HOH HOH . 
J 4 HOH A 9 23 23 HOH HOH . 
J 4 HOH A 10 24 24 HOH HOH . 
J 4 HOH A 11 25 25 HOH HOH . 
J 4 HOH A 12 27 27 HOH HOH . 
J 4 HOH A 13 28 28 HOH HOH . 
J 4 HOH A 14 29 29 HOH HOH . 
J 4 HOH A 15 30 30 HOH HOH . 
J 4 HOH A 16 31 31 HOH HOH . 
J 4 HOH A 17 35 35 HOH HOH . 
J 4 HOH A 18 36 36 HOH HOH . 
J 4 HOH A 19 37 37 HOH HOH . 
J 4 HOH A 20 39 39 HOH HOH . 
J 4 HOH A 21 41 41 HOH HOH . 
J 4 HOH A 22 42 42 HOH HOH . 
J 4 HOH A 23 43 43 HOH HOH . 
J 4 HOH A 24 45 45 HOH HOH . 
J 4 HOH A 25 46 46 HOH HOH . 
J 4 HOH A 26 47 47 HOH HOH . 
J 4 HOH A 27 48 48 HOH HOH . 
J 4 HOH A 28 50 50 HOH HOH . 
J 4 HOH A 29 52 52 HOH HOH . 
J 4 HOH A 30 54 54 HOH HOH . 
J 4 HOH A 31 55 55 HOH HOH . 
J 4 HOH A 32 56 56 HOH HOH . 
J 4 HOH A 33 60 60 HOH HOH . 
J 4 HOH A 34 61 61 HOH HOH . 
J 4 HOH A 35 62 62 HOH HOH . 
J 4 HOH A 36 65 65 HOH HOH . 
J 4 HOH A 37 339 7 HOH HOH . 
J 4 HOH A 38 340 68 HOH HOH . 
J 4 HOH A 39 341 71 HOH HOH . 
J 4 HOH A 40 342 72 HOH HOH . 
J 4 HOH A 41 343 73 HOH HOH . 
J 4 HOH A 42 344 79 HOH HOH . 
J 4 HOH A 43 345 82 HOH HOH . 
J 4 HOH A 44 346 85 HOH HOH . 
J 4 HOH A 45 347 86 HOH HOH . 
J 4 HOH A 46 348 87 HOH HOH . 
J 4 HOH A 47 349 91 HOH HOH . 
J 4 HOH A 48 350 92 HOH HOH . 
J 4 HOH A 49 351 94 HOH HOH . 
J 4 HOH A 50 352 98 HOH HOH . 
J 4 HOH A 51 353 99 HOH HOH . 
J 4 HOH A 52 354 101 HOH HOH . 
J 4 HOH A 53 355 109 HOH HOH . 
J 4 HOH A 54 356 113 HOH HOH . 
J 4 HOH A 55 357 114 HOH HOH . 
J 4 HOH A 56 358 115 HOH HOH . 
J 4 HOH A 57 359 117 HOH HOH . 
J 4 HOH A 58 360 119 HOH HOH . 
J 4 HOH A 59 361 120 HOH HOH . 
J 4 HOH A 60 362 127 HOH HOH . 
J 4 HOH A 61 363 128 HOH HOH . 
J 4 HOH A 62 364 135 HOH HOH . 
J 4 HOH A 63 365 139 HOH HOH . 
J 4 HOH A 64 366 145 HOH HOH . 
J 4 HOH A 65 367 148 HOH HOH . 
J 4 HOH A 66 368 149 HOH HOH . 
J 4 HOH A 67 369 152 HOH HOH . 
J 4 HOH A 68 370 153 HOH HOH . 
J 4 HOH A 69 371 155 HOH HOH . 
J 4 HOH A 70 372 156 HOH HOH . 
J 4 HOH A 71 373 158 HOH HOH . 
J 4 HOH A 72 374 160 HOH HOH . 
J 4 HOH A 73 375 164 HOH HOH . 
J 4 HOH A 74 376 167 HOH HOH . 
J 4 HOH A 75 377 169 HOH HOH . 
J 4 HOH A 76 378 170 HOH HOH . 
J 4 HOH A 77 379 172 HOH HOH . 
J 4 HOH A 78 380 173 HOH HOH . 
J 4 HOH A 79 381 178 HOH HOH . 
J 4 HOH A 80 382 180 HOH HOH . 
J 4 HOH A 81 383 181 HOH HOH . 
J 4 HOH A 82 384 182 HOH HOH . 
J 4 HOH A 83 385 183 HOH HOH . 
J 4 HOH A 84 386 184 HOH HOH . 
J 4 HOH A 85 387 185 HOH HOH . 
J 4 HOH A 86 388 187 HOH HOH . 
J 4 HOH A 87 389 188 HOH HOH . 
J 4 HOH A 88 390 190 HOH HOH . 
J 4 HOH A 89 392 198 HOH HOH . 
J 4 HOH A 90 393 199 HOH HOH . 
J 4 HOH A 91 394 200 HOH HOH . 
J 4 HOH A 92 395 201 HOH HOH . 
J 4 HOH A 93 396 206 HOH HOH . 
J 4 HOH A 94 397 208 HOH HOH . 
J 4 HOH A 95 398 209 HOH HOH . 
J 4 HOH A 96 399 211 HOH HOH . 
J 4 HOH A 97 400 212 HOH HOH . 
J 4 HOH A 98 401 219 HOH HOH . 
J 4 HOH A 99 402 220 HOH HOH . 
J 4 HOH A 100 403 221 HOH HOH . 
J 4 HOH A 101 404 223 HOH HOH . 
J 4 HOH A 102 405 226 HOH HOH . 
J 4 HOH A 103 406 227 HOH HOH . 
J 4 HOH A 104 407 228 HOH HOH . 
J 4 HOH A 105 408 229 HOH HOH . 
J 4 HOH A 106 409 230 HOH HOH . 
J 4 HOH A 107 410 231 HOH HOH . 
J 4 HOH A 108 411 233 HOH HOH . 
J 4 HOH A 109 412 237 HOH HOH . 
J 4 HOH A 110 413 242 HOH HOH . 
J 4 HOH A 111 414 243 HOH HOH . 
J 4 HOH A 112 415 249 HOH HOH . 
J 4 HOH A 113 416 250 HOH HOH . 
K 4 HOH B 1 1 1 HOH HOH . 
K 4 HOH B 2 3 3 HOH HOH . 
K 4 HOH B 3 6 6 HOH HOH . 
K 4 HOH B 4 10 10 HOH HOH . 
K 4 HOH B 5 12 12 HOH HOH . 
K 4 HOH B 6 13 13 HOH HOH . 
K 4 HOH B 7 14 14 HOH HOH . 
K 4 HOH B 8 15 15 HOH HOH . 
K 4 HOH B 9 16 16 HOH HOH . 
K 4 HOH B 10 18 18 HOH HOH . 
K 4 HOH B 11 21 21 HOH HOH . 
K 4 HOH B 12 26 26 HOH HOH . 
K 4 HOH B 13 32 32 HOH HOH . 
K 4 HOH B 14 33 33 HOH HOH . 
K 4 HOH B 15 34 34 HOH HOH . 
K 4 HOH B 16 38 38 HOH HOH . 
K 4 HOH B 17 40 40 HOH HOH . 
K 4 HOH B 18 44 44 HOH HOH . 
K 4 HOH B 19 49 49 HOH HOH . 
K 4 HOH B 20 51 51 HOH HOH . 
K 4 HOH B 21 53 53 HOH HOH . 
K 4 HOH B 22 57 57 HOH HOH . 
K 4 HOH B 23 58 58 HOH HOH . 
K 4 HOH B 24 59 59 HOH HOH . 
K 4 HOH B 25 63 63 HOH HOH . 
K 4 HOH B 26 64 64 HOH HOH . 
K 4 HOH B 27 66 66 HOH HOH . 
K 4 HOH B 28 339 5 HOH HOH . 
K 4 HOH B 29 340 8 HOH HOH . 
K 4 HOH B 30 341 67 HOH HOH . 
K 4 HOH B 31 342 70 HOH HOH . 
K 4 HOH B 32 343 75 HOH HOH . 
K 4 HOH B 33 344 76 HOH HOH . 
K 4 HOH B 34 345 77 HOH HOH . 
K 4 HOH B 35 346 78 HOH HOH . 
K 4 HOH B 36 347 80 HOH HOH . 
K 4 HOH B 37 348 81 HOH HOH . 
K 4 HOH B 38 349 83 HOH HOH . 
K 4 HOH B 39 350 84 HOH HOH . 
K 4 HOH B 40 351 88 HOH HOH . 
K 4 HOH B 41 352 89 HOH HOH . 
K 4 HOH B 42 353 90 HOH HOH . 
K 4 HOH B 43 354 93 HOH HOH . 
K 4 HOH B 44 355 95 HOH HOH . 
K 4 HOH B 45 356 96 HOH HOH . 
K 4 HOH B 46 357 97 HOH HOH . 
K 4 HOH B 47 358 103 HOH HOH . 
K 4 HOH B 48 359 105 HOH HOH . 
K 4 HOH B 49 360 106 HOH HOH . 
K 4 HOH B 50 361 107 HOH HOH . 
K 4 HOH B 51 362 108 HOH HOH . 
K 4 HOH B 52 363 110 HOH HOH . 
K 4 HOH B 53 364 111 HOH HOH . 
K 4 HOH B 54 365 112 HOH HOH . 
K 4 HOH B 55 366 116 HOH HOH . 
K 4 HOH B 56 367 118 HOH HOH . 
K 4 HOH B 57 368 121 HOH HOH . 
K 4 HOH B 58 369 122 HOH HOH . 
K 4 HOH B 59 370 124 HOH HOH . 
K 4 HOH B 60 371 125 HOH HOH . 
K 4 HOH B 61 372 126 HOH HOH . 
K 4 HOH B 62 373 129 HOH HOH . 
K 4 HOH B 63 374 130 HOH HOH . 
K 4 HOH B 64 375 131 HOH HOH . 
K 4 HOH B 65 376 132 HOH HOH . 
K 4 HOH B 66 377 133 HOH HOH . 
K 4 HOH B 67 378 134 HOH HOH . 
K 4 HOH B 68 379 136 HOH HOH . 
K 4 HOH B 69 380 137 HOH HOH . 
K 4 HOH B 70 381 138 HOH HOH . 
K 4 HOH B 71 382 140 HOH HOH . 
K 4 HOH B 72 383 141 HOH HOH . 
K 4 HOH B 73 384 142 HOH HOH . 
K 4 HOH B 74 385 143 HOH HOH . 
K 4 HOH B 75 386 144 HOH HOH . 
K 4 HOH B 76 387 146 HOH HOH . 
K 4 HOH B 77 388 147 HOH HOH . 
K 4 HOH B 78 389 150 HOH HOH . 
K 4 HOH B 79 390 151 HOH HOH . 
K 4 HOH B 80 391 197 HOH HOH . 
K 4 HOH B 81 392 157 HOH HOH . 
K 4 HOH B 82 393 159 HOH HOH . 
K 4 HOH B 83 394 161 HOH HOH . 
K 4 HOH B 84 395 162 HOH HOH . 
K 4 HOH B 85 396 163 HOH HOH . 
K 4 HOH B 86 397 165 HOH HOH . 
K 4 HOH B 87 398 166 HOH HOH . 
K 4 HOH B 88 399 168 HOH HOH . 
K 4 HOH B 89 400 171 HOH HOH . 
K 4 HOH B 90 401 174 HOH HOH . 
K 4 HOH B 91 402 175 HOH HOH . 
K 4 HOH B 92 403 176 HOH HOH . 
K 4 HOH B 93 404 177 HOH HOH . 
K 4 HOH B 94 405 191 HOH HOH . 
K 4 HOH B 95 406 192 HOH HOH . 
K 4 HOH B 96 407 193 HOH HOH . 
K 4 HOH B 97 408 195 HOH HOH . 
K 4 HOH B 98 409 196 HOH HOH . 
K 4 HOH B 99 410 202 HOH HOH . 
K 4 HOH B 100 411 203 HOH HOH . 
K 4 HOH B 101 412 204 HOH HOH . 
K 4 HOH B 102 413 205 HOH HOH . 
K 4 HOH B 103 414 207 HOH HOH . 
K 4 HOH B 104 415 213 HOH HOH . 
K 4 HOH B 105 416 214 HOH HOH . 
K 4 HOH B 106 417 215 HOH HOH . 
K 4 HOH B 107 418 216 HOH HOH . 
K 4 HOH B 108 419 217 HOH HOH . 
K 4 HOH B 109 420 218 HOH HOH . 
K 4 HOH B 110 421 222 HOH HOH . 
K 4 HOH B 111 422 224 HOH HOH . 
K 4 HOH B 112 423 225 HOH HOH . 
K 4 HOH B 113 424 234 HOH HOH . 
K 4 HOH B 114 425 235 HOH HOH . 
K 4 HOH B 115 426 236 HOH HOH . 
K 4 HOH B 116 427 238 HOH HOH . 
K 4 HOH B 117 428 239 HOH HOH . 
K 4 HOH B 118 429 240 HOH HOH . 
K 4 HOH B 119 430 241 HOH HOH . 
K 4 HOH B 120 431 244 HOH HOH . 
K 4 HOH B 121 432 245 HOH HOH . 
K 4 HOH B 122 433 246 HOH HOH . 
K 4 HOH B 123 434 247 HOH HOH . 
K 4 HOH B 124 435 248 HOH HOH . 
K 4 HOH B 125 436 154 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . I 2 35.218 -46.387 -14.219 1 55.34 ? C1 GOL 8 B 1 
HETATM 2 O O1 GOL . . . I 2 35.523 -47.759 -14.254 1 50.62 ? O1 GOL 8 B 1 
HETATM 3 C C2 GOL . . . I 2 36.498 -45.569 -14.104 1 64.45 ? C2 GOL 8 B 1 
HETATM 4 O O2 GOL . . . I 2 37.154 -45.864 -12.894 1 67.64 ? O2 GOL 8 B 1 
HETATM 5 C C3 GOL . . . I 2 36.151 -44.087 -14.133 1 71.36 ? C3 GOL 8 B 1 
HETATM 6 O O3 GOL . . . I 2 37.244 -43.349 -13.633 1 73.47 ? O3 GOL 8 B 1 
#
_model_server_stats.io_time_ms              70 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    17 
_model_server_stats.query_time_ms           295 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           6 
#