data_3PGC # _model_server_result.job_id bssoYpM1R9OELUeqUzSZ2Q _model_server_result.datetime_utc '2025-02-05 04:06:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3pgc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":194}' # _entry.id 3PGC # _exptl.entry_id 3PGC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3PGC _cell.length_a 138.146 _cell.length_b 138.146 _cell.length_c 104.52 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3PGC _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA trimeric 3 author_and_software_defined_assembly 1 PISA trimeric 3 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,I,J,K 1 1 D,E,F,G,H,L,M,N 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id H _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 108 A CYS 107 1_555 A SG CYS 164 A CYS 163 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? disulf ? disulf2 B SG CYS 16 B CYS 15 1_555 B SG CYS 80 B CYS 79 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? disulf ? disulf3 B SG CYS 118 B CYS 117 1_555 B SG CYS 174 B CYS 173 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? disulf ? disulf4 D SG CYS 108 D CYS 107 1_555 D SG CYS 164 D CYS 163 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf5 E SG CYS 16 E CYS 15 1_555 E SG CYS 80 E CYS 79 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.078 ? disulf ? disulf6 E SG CYS 118 E CYS 117 1_555 E SG CYS 174 E CYS 173 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 3PGC _atom_sites.fract_transf_matrix[1][1] 0.007239 _atom_sites.fract_transf_matrix[1][2] 0.004179 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008359 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009568 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 4 PEG D 1 193 1 PEG PEG . H 5 GOL D 1 194 1 GOL GOL . I 6 HOH A 1 193 7 HOH HOH . I 6 HOH A 2 194 11 HOH HOH . I 6 HOH A 3 195 14 HOH HOH . I 6 HOH A 4 196 17 HOH HOH . I 6 HOH A 5 197 18 HOH HOH . I 6 HOH A 6 198 19 HOH HOH . I 6 HOH A 7 199 21 HOH HOH . I 6 HOH A 8 200 22 HOH HOH . I 6 HOH A 9 201 23 HOH HOH . I 6 HOH A 10 202 25 HOH HOH . I 6 HOH A 11 203 26 HOH HOH . I 6 HOH A 12 204 27 HOH HOH . I 6 HOH A 13 205 34 HOH HOH . I 6 HOH A 14 206 39 HOH HOH . I 6 HOH A 15 207 40 HOH HOH . I 6 HOH A 16 208 41 HOH HOH . I 6 HOH A 17 209 51 HOH HOH . I 6 HOH A 18 210 53 HOH HOH . I 6 HOH A 19 211 55 HOH HOH . I 6 HOH A 20 212 56 HOH HOH . I 6 HOH A 21 213 61 HOH HOH . I 6 HOH A 22 214 67 HOH HOH . I 6 HOH A 23 215 68 HOH HOH . I 6 HOH A 24 216 70 HOH HOH . I 6 HOH A 25 217 72 HOH HOH . I 6 HOH A 26 218 73 HOH HOH . I 6 HOH A 27 219 76 HOH HOH . I 6 HOH A 28 220 77 HOH HOH . I 6 HOH A 29 221 81 HOH HOH . I 6 HOH A 30 222 82 HOH HOH . I 6 HOH A 31 223 83 HOH HOH . I 6 HOH A 32 224 84 HOH HOH . I 6 HOH A 33 225 86 HOH HOH . I 6 HOH A 34 226 87 HOH HOH . I 6 HOH A 35 227 88 HOH HOH . I 6 HOH A 36 228 94 HOH HOH . I 6 HOH A 37 229 98 HOH HOH . I 6 HOH A 38 230 102 HOH HOH . I 6 HOH A 39 231 112 HOH HOH . J 6 HOH B 1 199 5 HOH HOH . J 6 HOH B 2 200 6 HOH HOH . J 6 HOH B 3 201 31 HOH HOH . J 6 HOH B 4 202 32 HOH HOH . J 6 HOH B 5 203 33 HOH HOH . J 6 HOH B 6 204 36 HOH HOH . J 6 HOH B 7 205 37 HOH HOH . J 6 HOH B 8 206 42 HOH HOH . J 6 HOH B 9 207 45 HOH HOH . J 6 HOH B 10 208 47 HOH HOH . J 6 HOH B 11 209 49 HOH HOH . J 6 HOH B 12 210 52 HOH HOH . J 6 HOH B 13 211 60 HOH HOH . J 6 HOH B 14 212 62 HOH HOH . J 6 HOH B 15 213 64 HOH HOH . J 6 HOH B 16 214 74 HOH HOH . J 6 HOH B 17 215 75 HOH HOH . J 6 HOH B 18 216 89 HOH HOH . J 6 HOH B 19 217 92 HOH HOH . J 6 HOH B 20 218 96 HOH HOH . J 6 HOH B 21 219 97 HOH HOH . J 6 HOH B 22 220 100 HOH HOH . J 6 HOH B 23 221 101 HOH HOH . J 6 HOH B 24 222 105 HOH HOH . J 6 HOH B 25 223 106 HOH HOH . J 6 HOH B 26 224 111 HOH HOH . J 6 HOH B 27 225 113 HOH HOH . J 6 HOH B 28 226 114 HOH HOH . J 6 HOH B 29 232 115 HOH HOH . K 6 HOH C 1 50 50 HOH HOH . L 6 HOH D 1 195 1 HOH HOH . L 6 HOH D 2 196 2 HOH HOH . L 6 HOH D 3 197 3 HOH HOH . L 6 HOH D 4 198 9 HOH HOH . L 6 HOH D 5 199 10 HOH HOH . L 6 HOH D 6 200 12 HOH HOH . L 6 HOH D 7 201 15 HOH HOH . L 6 HOH D 8 202 20 HOH HOH . L 6 HOH D 9 203 28 HOH HOH . L 6 HOH D 10 204 35 HOH HOH . L 6 HOH D 11 205 38 HOH HOH . L 6 HOH D 12 206 43 HOH HOH . L 6 HOH D 13 207 44 HOH HOH . L 6 HOH D 14 208 54 HOH HOH . L 6 HOH D 15 209 66 HOH HOH . L 6 HOH D 16 210 80 HOH HOH . L 6 HOH D 17 211 90 HOH HOH . L 6 HOH D 18 212 104 HOH HOH . L 6 HOH D 19 213 109 HOH HOH . M 6 HOH E 1 199 4 HOH HOH . M 6 HOH E 2 200 8 HOH HOH . M 6 HOH E 3 201 13 HOH HOH . M 6 HOH E 4 202 16 HOH HOH . M 6 HOH E 5 203 29 HOH HOH . M 6 HOH E 6 204 30 HOH HOH . M 6 HOH E 7 205 46 HOH HOH . M 6 HOH E 8 206 57 HOH HOH . M 6 HOH E 9 207 58 HOH HOH . M 6 HOH E 10 208 59 HOH HOH . M 6 HOH E 11 209 63 HOH HOH . M 6 HOH E 12 210 65 HOH HOH . M 6 HOH E 13 211 69 HOH HOH . M 6 HOH E 14 212 71 HOH HOH . M 6 HOH E 15 213 78 HOH HOH . M 6 HOH E 16 214 79 HOH HOH . M 6 HOH E 17 215 85 HOH HOH . M 6 HOH E 18 216 91 HOH HOH . M 6 HOH E 19 217 93 HOH HOH . M 6 HOH E 20 218 99 HOH HOH . M 6 HOH E 21 219 103 HOH HOH . M 6 HOH E 22 220 107 HOH HOH . M 6 HOH E 23 221 108 HOH HOH . M 6 HOH E 24 222 110 HOH HOH . N 6 HOH F 1 24 24 HOH HOH . N 6 HOH F 2 48 48 HOH HOH . N 6 HOH F 3 95 95 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . H 5 71.356 -9.766 -3.013 1 54.8 ? C1 GOL 194 D 1 HETATM 2 O O1 GOL . . . H 5 72.497 -10.583 -3.202 1 57.28 ? O1 GOL 194 D 1 HETATM 3 C C2 GOL . . . H 5 71.643 -8.559 -2.099 1 51.92 ? C2 GOL 194 D 1 HETATM 4 O O2 GOL . . . H 5 70.958 -7.452 -2.628 1 47.39 ? O2 GOL 194 D 1 HETATM 5 C C3 GOL . . . H 5 71.12 -8.785 -0.669 1 57.47 ? C3 GOL 194 D 1 HETATM 6 O O3 GOL . . . H 5 71.3 -7.632 0.142 1 53.84 ? O3 GOL 194 D 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 319 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 6 #