data_3PGI # _model_server_result.job_id 5HDyWbFHFp8xM6j41uaCGA _model_server_result.datetime_utc '2024-11-08 03:31:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3pgi # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":3002}' # _entry.id 3PGI # _exptl.entry_id 3PGI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 109.62 _cell.angle_gamma 90 _cell.entry_id 3PGI _cell.length_a 45.34 _cell.length_b 72.81 _cell.length_c 52.82 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3PGI _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 255 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 255 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 290 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 290 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.014 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 168 n n C1 C2 GOL sing 169 n n C1 H11 GOL sing 170 n n C1 H12 GOL sing 171 n n O1 HO1 GOL sing 172 n n C2 O2 GOL sing 173 n n C2 C3 GOL sing 174 n n C2 H2 GOL sing 175 n n O2 HO2 GOL sing 176 n n C3 O3 GOL sing 177 n n C3 H31 GOL sing 178 n n C3 H32 GOL sing 179 n n O3 HO3 GOL sing 180 n n # _atom_sites.entry_id 3PGI _atom_sites.fract_transf_matrix[1][1] 0.022056 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.007862 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013734 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.020099 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 F41 A 1 2001 2001 F41 F41 . C 3 GOL A 1 3002 3002 GOL GOL . D 4 HOH A 1 5001 5001 HOH HOH . D 4 HOH A 2 5002 5002 HOH HOH . D 4 HOH A 3 5003 5003 HOH HOH . D 4 HOH A 4 5004 5004 HOH HOH . D 4 HOH A 5 5005 5005 HOH HOH . D 4 HOH A 6 5006 5006 HOH HOH . D 4 HOH A 7 5007 5007 HOH HOH . D 4 HOH A 8 5008 5008 HOH HOH . D 4 HOH A 9 5009 5009 HOH HOH . D 4 HOH A 10 5010 5010 HOH HOH . D 4 HOH A 11 5011 5011 HOH HOH . D 4 HOH A 12 5012 5012 HOH HOH . D 4 HOH A 13 5013 5013 HOH HOH . D 4 HOH A 14 5014 5014 HOH HOH . D 4 HOH A 15 5015 5015 HOH HOH . D 4 HOH A 16 5016 5016 HOH HOH . D 4 HOH A 17 5017 5017 HOH HOH . D 4 HOH A 18 5018 5018 HOH HOH . D 4 HOH A 19 5019 5019 HOH HOH . D 4 HOH A 20 5020 5020 HOH HOH . D 4 HOH A 21 5021 5021 HOH HOH . D 4 HOH A 22 5022 5022 HOH HOH . D 4 HOH A 23 5023 5023 HOH HOH . D 4 HOH A 24 5024 5024 HOH HOH . D 4 HOH A 25 5025 5025 HOH HOH . D 4 HOH A 26 5026 5026 HOH HOH . D 4 HOH A 27 5027 5027 HOH HOH . D 4 HOH A 28 5028 5028 HOH HOH . D 4 HOH A 29 5029 5029 HOH HOH . D 4 HOH A 30 5030 5030 HOH HOH . D 4 HOH A 31 5031 5031 HOH HOH . D 4 HOH A 32 5032 5032 HOH HOH . D 4 HOH A 33 5033 5033 HOH HOH . D 4 HOH A 34 5034 5034 HOH HOH . D 4 HOH A 35 5035 5035 HOH HOH . D 4 HOH A 36 5036 5036 HOH HOH . D 4 HOH A 37 5037 5037 HOH HOH . D 4 HOH A 38 5038 5038 HOH HOH . D 4 HOH A 39 5039 5039 HOH HOH . D 4 HOH A 40 5040 5040 HOH HOH . D 4 HOH A 41 5041 5041 HOH HOH . D 4 HOH A 42 5042 5042 HOH HOH . D 4 HOH A 43 5043 5043 HOH HOH . D 4 HOH A 44 5044 5044 HOH HOH . D 4 HOH A 45 5045 5045 HOH HOH . D 4 HOH A 46 5046 5046 HOH HOH . D 4 HOH A 47 5047 5047 HOH HOH . D 4 HOH A 48 5048 5048 HOH HOH . D 4 HOH A 49 5049 5049 HOH HOH . D 4 HOH A 50 5050 5050 HOH HOH . D 4 HOH A 51 5051 5051 HOH HOH . D 4 HOH A 52 5052 5052 HOH HOH . D 4 HOH A 53 5053 5053 HOH HOH . D 4 HOH A 54 5054 5054 HOH HOH . D 4 HOH A 55 5055 5055 HOH HOH . D 4 HOH A 56 5056 5056 HOH HOH . D 4 HOH A 57 5057 5057 HOH HOH . D 4 HOH A 58 5058 5058 HOH HOH . D 4 HOH A 59 5059 5059 HOH HOH . D 4 HOH A 60 5060 5060 HOH HOH . D 4 HOH A 61 5061 5061 HOH HOH . D 4 HOH A 62 5062 5062 HOH HOH . D 4 HOH A 63 5063 5063 HOH HOH . D 4 HOH A 64 5064 5064 HOH HOH . D 4 HOH A 65 5065 5065 HOH HOH . D 4 HOH A 66 5066 5066 HOH HOH . D 4 HOH A 67 5067 5067 HOH HOH . D 4 HOH A 68 5068 5068 HOH HOH . D 4 HOH A 69 5069 5069 HOH HOH . D 4 HOH A 70 5070 5070 HOH HOH . D 4 HOH A 71 5071 5071 HOH HOH . D 4 HOH A 72 5072 5072 HOH HOH . D 4 HOH A 73 5073 5073 HOH HOH . D 4 HOH A 74 5074 5074 HOH HOH . D 4 HOH A 75 5075 5075 HOH HOH . D 4 HOH A 76 5076 5076 HOH HOH . D 4 HOH A 77 5077 5077 HOH HOH . D 4 HOH A 78 5078 5078 HOH HOH . D 4 HOH A 79 5079 5079 HOH HOH . D 4 HOH A 80 5080 5080 HOH HOH . D 4 HOH A 81 5081 5081 HOH HOH . D 4 HOH A 82 5082 5082 HOH HOH . D 4 HOH A 83 5083 5083 HOH HOH . D 4 HOH A 84 5084 5084 HOH HOH . D 4 HOH A 85 5085 5085 HOH HOH . D 4 HOH A 86 5086 5086 HOH HOH . D 4 HOH A 87 5087 5087 HOH HOH . D 4 HOH A 88 5088 5088 HOH HOH . D 4 HOH A 89 5089 5089 HOH HOH . D 4 HOH A 90 5090 5090 HOH HOH . D 4 HOH A 91 5091 5091 HOH HOH . D 4 HOH A 92 5092 5092 HOH HOH . D 4 HOH A 93 5093 5093 HOH HOH . D 4 HOH A 94 5094 5094 HOH HOH . D 4 HOH A 95 5095 5095 HOH HOH . D 4 HOH A 96 5096 5096 HOH HOH . D 4 HOH A 97 5097 5097 HOH HOH . D 4 HOH A 98 5098 5098 HOH HOH . D 4 HOH A 99 5099 5099 HOH HOH . D 4 HOH A 100 5100 5100 HOH HOH . D 4 HOH A 101 5101 5101 HOH HOH . D 4 HOH A 102 5102 5102 HOH HOH . D 4 HOH A 103 5103 5103 HOH HOH . D 4 HOH A 104 5104 5104 HOH HOH . D 4 HOH A 105 5105 5105 HOH HOH . D 4 HOH A 106 5106 5106 HOH HOH . D 4 HOH A 107 5107 5107 HOH HOH . D 4 HOH A 108 5108 5108 HOH HOH . D 4 HOH A 109 5109 5109 HOH HOH . D 4 HOH A 110 5110 5110 HOH HOH . D 4 HOH A 111 5111 5111 HOH HOH . D 4 HOH A 112 5112 5112 HOH HOH . D 4 HOH A 113 5113 5113 HOH HOH . D 4 HOH A 114 5114 5114 HOH HOH . D 4 HOH A 115 5115 5115 HOH HOH . D 4 HOH A 116 5116 5116 HOH HOH . D 4 HOH A 117 5117 5117 HOH HOH . D 4 HOH A 118 5118 5118 HOH HOH . D 4 HOH A 119 5119 5119 HOH HOH . D 4 HOH A 120 5120 5120 HOH HOH . D 4 HOH A 121 5121 5121 HOH HOH . D 4 HOH A 122 5122 5122 HOH HOH . D 4 HOH A 123 5123 5123 HOH HOH . D 4 HOH A 124 5124 5124 HOH HOH . D 4 HOH A 125 5125 5125 HOH HOH . D 4 HOH A 126 5126 5126 HOH HOH . D 4 HOH A 127 5127 5127 HOH HOH . D 4 HOH A 128 5128 5128 HOH HOH . D 4 HOH A 129 5129 5129 HOH HOH . D 4 HOH A 130 5130 5130 HOH HOH . D 4 HOH A 131 5131 5131 HOH HOH . D 4 HOH A 132 5132 5132 HOH HOH . D 4 HOH A 133 5133 5133 HOH HOH . D 4 HOH A 134 5134 5134 HOH HOH . D 4 HOH A 135 5135 5135 HOH HOH . D 4 HOH A 136 5136 5136 HOH HOH . D 4 HOH A 137 5137 5137 HOH HOH . D 4 HOH A 138 5138 5138 HOH HOH . D 4 HOH A 139 5139 5139 HOH HOH . D 4 HOH A 140 5140 5140 HOH HOH . D 4 HOH A 141 5141 5141 HOH HOH . D 4 HOH A 142 5142 5142 HOH HOH . D 4 HOH A 143 5143 5143 HOH HOH . D 4 HOH A 144 5144 5144 HOH HOH . D 4 HOH A 145 5145 5145 HOH HOH . D 4 HOH A 146 5146 5146 HOH HOH . D 4 HOH A 147 5147 5147 HOH HOH . D 4 HOH A 148 5148 5148 HOH HOH . D 4 HOH A 149 5149 5149 HOH HOH . D 4 HOH A 150 5150 5150 HOH HOH . D 4 HOH A 151 5151 5151 HOH HOH . D 4 HOH A 152 5152 5152 HOH HOH . D 4 HOH A 153 5153 5153 HOH HOH . D 4 HOH A 154 5154 5154 HOH HOH . D 4 HOH A 155 5155 5155 HOH HOH . D 4 HOH A 156 5156 5156 HOH HOH . D 4 HOH A 157 5157 5157 HOH HOH . D 4 HOH A 158 5158 5158 HOH HOH . D 4 HOH A 159 5159 5159 HOH HOH . D 4 HOH A 160 5160 5160 HOH HOH . D 4 HOH A 161 5161 5161 HOH HOH . D 4 HOH A 162 5162 5162 HOH HOH . D 4 HOH A 163 5163 5163 HOH HOH . D 4 HOH A 164 5164 5164 HOH HOH . D 4 HOH A 165 5165 5165 HOH HOH . D 4 HOH A 166 5166 5166 HOH HOH . D 4 HOH A 167 5167 5167 HOH HOH . D 4 HOH A 168 5168 5168 HOH HOH . D 4 HOH A 169 5169 5169 HOH HOH . D 4 HOH A 170 5170 5170 HOH HOH . D 4 HOH A 171 5171 5171 HOH HOH . D 4 HOH A 172 5172 5172 HOH HOH . D 4 HOH A 173 5173 5173 HOH HOH . D 4 HOH A 174 5174 5174 HOH HOH . D 4 HOH A 175 5175 5175 HOH HOH . D 4 HOH A 176 5176 5176 HOH HOH . D 4 HOH A 177 5177 5177 HOH HOH . D 4 HOH A 178 5178 5178 HOH HOH . D 4 HOH A 179 5179 5179 HOH HOH . D 4 HOH A 180 5180 5180 HOH HOH . D 4 HOH A 181 5181 5181 HOH HOH . D 4 HOH A 182 5182 5182 HOH HOH . D 4 HOH A 183 5183 5183 HOH HOH . D 4 HOH A 184 5184 5184 HOH HOH . D 4 HOH A 185 5185 5185 HOH HOH . D 4 HOH A 186 5186 5186 HOH HOH . D 4 HOH A 187 5187 5187 HOH HOH . D 4 HOH A 188 5188 5188 HOH HOH . D 4 HOH A 189 5189 5189 HOH HOH . D 4 HOH A 190 5190 5190 HOH HOH . D 4 HOH A 191 5191 5191 HOH HOH . D 4 HOH A 192 5192 5192 HOH HOH . D 4 HOH A 193 5193 5193 HOH HOH . D 4 HOH A 194 5194 5194 HOH HOH . D 4 HOH A 195 5195 5195 HOH HOH . D 4 HOH A 196 5196 5196 HOH HOH . D 4 HOH A 197 5197 5197 HOH HOH . D 4 HOH A 198 5198 5198 HOH HOH . D 4 HOH A 199 5199 5199 HOH HOH . D 4 HOH A 200 5200 5200 HOH HOH . D 4 HOH A 201 5201 5201 HOH HOH . D 4 HOH A 202 5202 5202 HOH HOH . D 4 HOH A 203 5203 5203 HOH HOH . D 4 HOH A 204 5204 5204 HOH HOH . D 4 HOH A 205 5205 5205 HOH HOH . D 4 HOH A 206 5206 5206 HOH HOH . D 4 HOH A 207 5207 5207 HOH HOH . D 4 HOH A 208 5208 5208 HOH HOH . D 4 HOH A 209 5209 5209 HOH HOH . D 4 HOH A 210 5210 5210 HOH HOH . D 4 HOH A 211 5211 5211 HOH HOH . D 4 HOH A 212 5212 5212 HOH HOH . D 4 HOH A 213 5213 5213 HOH HOH . D 4 HOH A 214 5214 5214 HOH HOH . D 4 HOH A 215 5215 5215 HOH HOH . D 4 HOH A 216 5216 5216 HOH HOH . D 4 HOH A 217 5217 5217 HOH HOH . D 4 HOH A 218 5218 5218 HOH HOH . D 4 HOH A 219 5219 5219 HOH HOH . D 4 HOH A 220 5220 5220 HOH HOH . D 4 HOH A 221 5221 5221 HOH HOH . D 4 HOH A 222 5222 5222 HOH HOH . D 4 HOH A 223 5223 5223 HOH HOH . D 4 HOH A 224 5224 5224 HOH HOH . D 4 HOH A 225 5225 5225 HOH HOH . D 4 HOH A 226 5226 5226 HOH HOH . D 4 HOH A 227 5227 5227 HOH HOH . D 4 HOH A 228 5228 5228 HOH HOH . D 4 HOH A 229 5229 5229 HOH HOH . D 4 HOH A 230 5230 5230 HOH HOH . D 4 HOH A 231 5231 5231 HOH HOH . D 4 HOH A 232 5232 5232 HOH HOH . D 4 HOH A 233 5233 5233 HOH HOH . D 4 HOH A 234 5234 5234 HOH HOH . D 4 HOH A 235 5235 5235 HOH HOH . D 4 HOH A 236 5236 5236 HOH HOH . D 4 HOH A 237 5237 5237 HOH HOH . D 4 HOH A 238 5238 5238 HOH HOH . D 4 HOH A 239 5240 5240 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . C 3 8.426 -3.277 -11.739 1 47.55 ? C1 GOL 3002 A 1 HETATM 2 O O1 GOL . . . C 3 9.421 -2.505 -11.043 1 25.82 ? O1 GOL 3002 A 1 HETATM 3 C C2 GOL . . . C 3 7.058 -2.555 -11.569 1 47.42 ? C2 GOL 3002 A 1 HETATM 4 O O2 GOL . . . C 3 6.886 -1.612 -12.648 1 30 ? O2 GOL 3002 A 1 HETATM 5 C C3 GOL . . . C 3 5.902 -3.586 -11.69 1 46.49 ? C3 GOL 3002 A 1 HETATM 6 O O3 GOL . . . C 3 6.039 -4.185 -12.994 1 44.89 ? O3 GOL 3002 A 1 # _model_server_stats.io_time_ms 41 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 296 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #