data_3PGL # _model_server_result.job_id wOwmnDOINdo7SE9S7ECe3A _model_server_result.datetime_utc '2024-11-26 08:43:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3pgl # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1}' # _entry.id 3PGL # _exptl.entry_id 3PGL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 111.93 _cell.angle_gamma 90 _cell.entry_id 3PGL _cell.length_a 125.525 _cell.length_b 78.26 _cell.length_c 62.682 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3PGL _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,F 1 1 B,E,G 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 C MG MG . A MG 1 1_555 F O HOH . A HOH 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.876 ? metalc ? metalc2 C MG MG . A MG 1 1_555 F O HOH . A HOH 32 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.273 ? metalc ? metalc3 C MG MG . A MG 1 1_555 A OD2 ASP 20 A ASP 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.985 ? metalc ? metalc4 C MG MG . A MG 1 1_555 A O ASP 22 A ASP 98 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.105 ? metalc ? metalc5 C MG MG . A MG 1 1_555 A OD1 ASN 131 A ASN 207 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.119 ? metalc ? metalc6 C MG MG . A MG 1 1_555 F O HOH . A HOH 258 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.887 ? metalc ? metalc7 E MG MG . B MG 1 1_555 G O HOH . B HOH 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.266 ? metalc ? metalc8 E MG MG . B MG 1 1_555 G O HOH . B HOH 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.924 ? metalc ? metalc9 E MG MG . B MG 1 1_555 B OD2 ASP 20 B ASP 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.272 ? metalc ? metalc10 E MG MG . B MG 1 1_555 B O ASP 22 B ASP 98 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.166 ? metalc ? metalc11 E MG MG . B MG 1 1_555 B OD1 ASN 131 B ASN 207 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.223 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3PGL _atom_sites.fract_transf_matrix[1][1] 0.007967 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003207 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012778 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017198 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MG A 1 1 1 MG MG . D 3 RZX A 1 257 1 RZX RZX . E 2 MG B 1 1 1 MG MG . F 4 HOH A 1 2 2 HOH HOH . F 4 HOH A 2 3 3 HOH HOH . F 4 HOH A 3 7 7 HOH HOH . F 4 HOH A 4 8 8 HOH HOH . F 4 HOH A 5 9 9 HOH HOH . F 4 HOH A 6 12 12 HOH HOH . F 4 HOH A 7 13 13 HOH HOH . F 4 HOH A 8 14 14 HOH HOH . F 4 HOH A 9 16 16 HOH HOH . F 4 HOH A 10 17 17 HOH HOH . F 4 HOH A 11 19 19 HOH HOH . F 4 HOH A 12 20 20 HOH HOH . F 4 HOH A 13 21 21 HOH HOH . F 4 HOH A 14 22 22 HOH HOH . F 4 HOH A 15 23 23 HOH HOH . F 4 HOH A 16 24 24 HOH HOH . F 4 HOH A 17 26 26 HOH HOH . F 4 HOH A 18 29 29 HOH HOH . F 4 HOH A 19 30 30 HOH HOH . F 4 HOH A 20 31 31 HOH HOH . F 4 HOH A 21 32 32 HOH HOH . F 4 HOH A 22 34 34 HOH HOH . F 4 HOH A 23 35 35 HOH HOH . F 4 HOH A 24 36 36 HOH HOH . F 4 HOH A 25 37 37 HOH HOH . F 4 HOH A 26 39 39 HOH HOH . F 4 HOH A 27 40 40 HOH HOH . F 4 HOH A 28 41 41 HOH HOH . F 4 HOH A 29 43 43 HOH HOH . F 4 HOH A 30 44 44 HOH HOH . F 4 HOH A 31 45 45 HOH HOH . F 4 HOH A 32 46 46 HOH HOH . F 4 HOH A 33 47 47 HOH HOH . F 4 HOH A 34 48 48 HOH HOH . F 4 HOH A 35 51 51 HOH HOH . F 4 HOH A 36 52 52 HOH HOH . F 4 HOH A 37 53 53 HOH HOH . F 4 HOH A 38 55 55 HOH HOH . F 4 HOH A 39 60 60 HOH HOH . F 4 HOH A 40 61 61 HOH HOH . F 4 HOH A 41 63 63 HOH HOH . F 4 HOH A 42 64 64 HOH HOH . F 4 HOH A 43 65 65 HOH HOH . F 4 HOH A 44 74 74 HOH HOH . F 4 HOH A 45 258 1 HOH HOH . F 4 HOH A 46 259 1 HOH HOH . F 4 HOH A 47 260 2 HOH HOH . F 4 HOH A 48 261 77 HOH HOH . F 4 HOH A 49 262 78 HOH HOH . F 4 HOH A 50 263 80 HOH HOH . F 4 HOH A 51 264 85 HOH HOH . F 4 HOH A 52 265 88 HOH HOH . F 4 HOH A 53 266 90 HOH HOH . F 4 HOH A 54 267 91 HOH HOH . F 4 HOH A 55 268 92 HOH HOH . F 4 HOH A 56 269 93 HOH HOH . F 4 HOH A 57 270 94 HOH HOH . F 4 HOH A 58 271 95 HOH HOH . F 4 HOH A 59 272 96 HOH HOH . F 4 HOH A 60 273 97 HOH HOH . F 4 HOH A 61 274 98 HOH HOH . F 4 HOH A 62 275 100 HOH HOH . F 4 HOH A 63 276 101 HOH HOH . F 4 HOH A 64 277 104 HOH HOH . F 4 HOH A 65 278 107 HOH HOH . F 4 HOH A 66 279 109 HOH HOH . G 4 HOH B 1 2 2 HOH HOH . G 4 HOH B 2 4 4 HOH HOH . G 4 HOH B 3 5 5 HOH HOH . G 4 HOH B 4 6 6 HOH HOH . G 4 HOH B 5 10 10 HOH HOH . G 4 HOH B 6 11 11 HOH HOH . G 4 HOH B 7 15 15 HOH HOH . G 4 HOH B 8 18 18 HOH HOH . G 4 HOH B 9 25 25 HOH HOH . G 4 HOH B 10 27 27 HOH HOH . G 4 HOH B 11 28 28 HOH HOH . G 4 HOH B 12 33 33 HOH HOH . G 4 HOH B 13 38 38 HOH HOH . G 4 HOH B 14 42 42 HOH HOH . G 4 HOH B 15 49 49 HOH HOH . G 4 HOH B 16 50 50 HOH HOH . G 4 HOH B 17 54 54 HOH HOH . G 4 HOH B 18 56 56 HOH HOH . G 4 HOH B 19 57 57 HOH HOH . G 4 HOH B 20 58 58 HOH HOH . G 4 HOH B 21 59 59 HOH HOH . G 4 HOH B 22 62 62 HOH HOH . G 4 HOH B 23 66 66 HOH HOH . G 4 HOH B 24 67 67 HOH HOH . G 4 HOH B 25 68 68 HOH HOH . G 4 HOH B 26 69 69 HOH HOH . G 4 HOH B 27 71 71 HOH HOH . G 4 HOH B 28 72 72 HOH HOH . G 4 HOH B 29 73 73 HOH HOH . G 4 HOH B 30 75 75 HOH HOH . G 4 HOH B 31 76 76 HOH HOH . G 4 HOH B 32 257 1 HOH HOH . G 4 HOH B 33 258 79 HOH HOH . G 4 HOH B 34 259 81 HOH HOH . G 4 HOH B 35 260 82 HOH HOH . G 4 HOH B 36 261 83 HOH HOH . G 4 HOH B 37 262 84 HOH HOH . G 4 HOH B 38 263 86 HOH HOH . G 4 HOH B 39 264 87 HOH HOH . G 4 HOH B 40 265 89 HOH HOH . G 4 HOH B 41 266 99 HOH HOH . G 4 HOH B 42 267 102 HOH HOH . G 4 HOH B 43 268 103 HOH HOH . G 4 HOH B 44 269 105 HOH HOH . G 4 HOH B 45 270 106 HOH HOH . G 4 HOH B 46 271 108 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 2 _atom_site.Cartn_x 9.534 _atom_site.Cartn_y 18.115 _atom_site.Cartn_z -6.739 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 25.42 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 1 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 28 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 339 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 1 #