data_3PGQ
#
_model_server_result.job_id            hvRJCAxYVKmPaa8qhoOM-A 
_model_server_result.datetime_utc      '2024-11-15 11:33:57' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3pgq 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":2240}' 
#
_entry.id    3PGQ 
#
_exptl.entry_id    3PGQ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              314.379 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            8-(2-ethenyl-6-ethyl-4-methylphenyl)tetrahydro-7H-pyrazolo[1,2-d][1,4,5]oxadiazepine-7,9(8H)-dione 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          94.29 
_cell.angle_gamma         90 
_cell.entry_id            3PGQ 
_cell.length_a            247.18 
_cell.length_b            123.415 
_cell.length_c            145.711 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3PGQ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,D 1 1,2 
B,C,E,F 2 1 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 D N N 
? 2 E N N 
? 2 F N N 
#
_chem_comp.formula           'C18 H22 N2 O3' 
_chem_comp.formula_weight    314.379 
_chem_comp.id                GY3 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              8-(2-ethenyl-6-ethyl-4-methylphenyl)tetrahydro-7H-pyrazolo[1,2-d][1,4,5]oxadiazepine-7,9(8H)-dione 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C2 O1 GY3 sing 129 n n 
O1 C10 GY3 sing 130 n n 
C3 C2 GY3 sing 131 n n 
C2 H2 GY3 sing 132 n n 
C2 H2A GY3 sing 133 n n 
N4 C3 GY3 sing 134 n n 
C3 H3 GY3 sing 135 n n 
C3 H3A GY3 sing 136 n n 
C5 N4 GY3 sing 137 n n 
N4 N8 GY3 sing 138 n n 
O11 C5 GY3 doub 139 n n 
C6 C5 GY3 sing 140 n n 
C19 C6 GY3 sing 141 n n 
C6 C7 GY3 sing 142 n n 
C6 H6 GY3 sing 143 n n 
O12 C7 GY3 doub 144 n n 
C7 N8 GY3 sing 145 n n 
N8 C9 GY3 sing 146 n n 
C9 C10 GY3 sing 147 n n 
C9 H9 GY3 sing 148 n n 
C9 H9A GY3 sing 149 n n 
C10 H10 GY3 sing 150 n n 
C10 H10A GY3 sing 151 n n 
C24 C19 GY3 doub 152 n y 
C19 C20 GY3 sing 153 n y 
C21 C20 GY3 doub 154 n y 
C20 C28 GY3 sing 155 n n 
C22 C21 GY3 sing 156 n y 
C21 H21 GY3 sing 157 n n 
C27 C22 GY3 sing 158 n n 
C23 C22 GY3 doub 159 n y 
C23 C24 GY3 sing 160 n y 
C23 H23 GY3 sing 161 n n 
C25 C24 GY3 sing 162 n n 
C26 C25 GY3 doub 163 n n 
C25 H25 GY3 sing 164 n n 
C26 H26 GY3 sing 165 n n 
C26 H26A GY3 sing 166 n n 
C27 H27 GY3 sing 167 n n 
C27 H27A GY3 sing 168 n n 
C27 H27B GY3 sing 169 n n 
C28 C29 GY3 sing 170 n n 
C28 H28 GY3 sing 171 n n 
C28 H28A GY3 sing 172 n n 
C29 H29 GY3 sing 173 n n 
C29 H29A GY3 sing 174 n n 
C29 H29B GY3 sing 175 n n 
#
_atom_sites.entry_id                     3PGQ 
_atom_sites.fract_transf_matrix[1][1]    0.004046 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000303 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008103 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006882 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 2 GY3 A 1 3000 3000 GY3 GY3 . 
E 2 GY3 B 1 3000 3000 GY3 GY3 . 
F 2 GY3 B 1 2240 2196 GY3 GY3 . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O1 GY3 . . . F 2 45.149 -36.297 67.65 1 191.19 ? O1 GY3 2240 B 1 
HETATM 2 C C2 GY3 . . . F 2 44.446 -35.079 67.235 1 190.95 ? C2 GY3 2240 B 1 
HETATM 3 C C3 GY3 . . . F 2 44.24 -35.074 65.717 1 184.28 ? C3 GY3 2240 B 1 
HETATM 4 N N4 GY3 . . . F 2 45.531 -34.865 65.029 1 177.56 ? N4 GY3 2240 B 1 
HETATM 5 C C5 GY3 . . . F 2 45.566 -34.084 63.955 1 171.82 ? C5 GY3 2240 B 1 
HETATM 6 C C6 GY3 . . . F 2 46.875 -34.009 63.531 1 164.49 ? C6 GY3 2240 B 1 
HETATM 7 C C7 GY3 . . . F 2 47.55 -34.865 64.363 1 162.74 ? C7 GY3 2240 B 1 
HETATM 8 N N8 GY3 . . . F 2 46.677 -35.307 65.28 1 175.35 ? N8 GY3 2240 B 1 
HETATM 9 C C9 GY3 . . . F 2 47.129 -36.297 66.301 1 183.4 ? C9 GY3 2240 B 1 
HETATM 10 C C10 GY3 . . . F 2 46.56 -36.053 67.705 1 186.5 ? C10 GY3 2240 B 1 
HETATM 11 O O11 GY3 . . . F 2 44.617 -33.432 63.528 1 176.71 ? O11 GY3 2240 B 1 
HETATM 12 O O12 GY3 . . . F 2 48.894 -35.088 64.322 1 147.66 ? O12 GY3 2240 B 1 
HETATM 13 C C19 GY3 . . . F 2 47.388 -33.46 62.361 1 159.92 ? C19 GY3 2240 B 1 
HETATM 14 C C20 GY3 . . . F 2 48.482 -32.596 62.467 1 156.61 ? C20 GY3 2240 B 1 
HETATM 15 C C21 GY3 . . . F 2 49.079 -32.122 61.298 1 153.77 ? C21 GY3 2240 B 1 
HETATM 16 C C22 GY3 . . . F 2 48.609 -32.499 60.047 1 148.92 ? C22 GY3 2240 B 1 
HETATM 17 C C23 GY3 . . . F 2 47.55 -33.413 59.954 1 150.42 ? C23 GY3 2240 B 1 
HETATM 18 C C24 GY3 . . . F 2 46.918 -33.916 61.105 1 154.27 ? C24 GY3 2240 B 1 
HETATM 19 C C25 GY3 . . . F 2 45.736 -34.928 60.918 1 149.06 ? C25 GY3 2240 B 1 
HETATM 20 C C26 GY3 . . . F 2 44.531 -34.39 60.103 1 139.69 ? C26 GY3 2240 B 1 
HETATM 21 C C27 GY3 . . . F 2 49.275 -31.891 58.804 1 140.73 ? C27 GY3 2240 B 1 
HETATM 22 C C28 GY3 . . . F 2 49.052 -32.113 63.809 1 151.79 ? C28 GY3 2240 B 1 
HETATM 23 C C29 GY3 . . . F 2 48.123 -31.087 64.448 1 146.63 ? C29 GY3 2240 B 1 
#
_model_server_stats.io_time_ms              35 
_model_server_stats.parse_time_ms           19 
_model_server_stats.create_model_time_ms    56 
_model_server_stats.query_time_ms           324 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           23 
#