data_3PGQ # _model_server_result.job_id jj9aAHlm1zm8kMHEg8k_7Q _model_server_result.datetime_utc '2024-11-15 11:31:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3pgq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":3000}' # _entry.id 3PGQ # _exptl.entry_id 3PGQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 314.379 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 8-(2-ethenyl-6-ethyl-4-methylphenyl)tetrahydro-7H-pyrazolo[1,2-d][1,4,5]oxadiazepine-7,9(8H)-dione _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 94.29 _cell.angle_gamma 90 _cell.entry_id 3PGQ _cell.length_a 247.18 _cell.length_b 123.415 _cell.length_c 145.711 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3PGQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D 1 1,2 B,C,E,F 2 1 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 D N N ? 2 E N N ? 2 F N N # _chem_comp.formula 'C18 H22 N2 O3' _chem_comp.formula_weight 314.379 _chem_comp.id GY3 _chem_comp.mon_nstd_flag . _chem_comp.name 8-(2-ethenyl-6-ethyl-4-methylphenyl)tetrahydro-7H-pyrazolo[1,2-d][1,4,5]oxadiazepine-7,9(8H)-dione _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C2 O1 GY3 sing 129 n n O1 C10 GY3 sing 130 n n C3 C2 GY3 sing 131 n n C2 H2 GY3 sing 132 n n C2 H2A GY3 sing 133 n n N4 C3 GY3 sing 134 n n C3 H3 GY3 sing 135 n n C3 H3A GY3 sing 136 n n C5 N4 GY3 sing 137 n n N4 N8 GY3 sing 138 n n O11 C5 GY3 doub 139 n n C6 C5 GY3 sing 140 n n C19 C6 GY3 sing 141 n n C6 C7 GY3 sing 142 n n C6 H6 GY3 sing 143 n n O12 C7 GY3 doub 144 n n C7 N8 GY3 sing 145 n n N8 C9 GY3 sing 146 n n C9 C10 GY3 sing 147 n n C9 H9 GY3 sing 148 n n C9 H9A GY3 sing 149 n n C10 H10 GY3 sing 150 n n C10 H10A GY3 sing 151 n n C24 C19 GY3 doub 152 n y C19 C20 GY3 sing 153 n y C21 C20 GY3 doub 154 n y C20 C28 GY3 sing 155 n n C22 C21 GY3 sing 156 n y C21 H21 GY3 sing 157 n n C27 C22 GY3 sing 158 n n C23 C22 GY3 doub 159 n y C23 C24 GY3 sing 160 n y C23 H23 GY3 sing 161 n n C25 C24 GY3 sing 162 n n C26 C25 GY3 doub 163 n n C25 H25 GY3 sing 164 n n C26 H26 GY3 sing 165 n n C26 H26A GY3 sing 166 n n C27 H27 GY3 sing 167 n n C27 H27A GY3 sing 168 n n C27 H27B GY3 sing 169 n n C28 C29 GY3 sing 170 n n C28 H28 GY3 sing 171 n n C28 H28A GY3 sing 172 n n C29 H29 GY3 sing 173 n n C29 H29A GY3 sing 174 n n C29 H29B GY3 sing 175 n n # _atom_sites.entry_id 3PGQ _atom_sites.fract_transf_matrix[1][1] 0.004046 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000303 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008103 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006882 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 GY3 A 1 3000 3000 GY3 GY3 . E 2 GY3 B 1 3000 3000 GY3 GY3 . F 2 GY3 B 1 2240 2196 GY3 GY3 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 GY3 . . . D 2 0.311 27.995 -25.802 1 86.52 ? O1 GY3 3000 A 1 HETATM 2 C C2 GY3 . . . D 2 -1.106 27.903 -25.456 1 85.29 ? C2 GY3 3000 A 1 HETATM 3 C C3 GY3 . . . D 2 -1.24 27.935 -23.937 1 78.97 ? C3 GY3 3000 A 1 HETATM 4 N N4 GY3 . . . D 2 -0.712 26.685 -23.363 1 78.4 ? N4 GY3 3000 A 1 HETATM 5 C C5 GY3 . . . D 2 -1.284 26.178 -22.259 1 75.74 ? C5 GY3 3000 A 1 HETATM 6 C C6 GY3 . . . D 2 -0.608 25.021 -21.906 1 70.98 ? C6 GY3 3000 A 1 HETATM 7 C C7 GY3 . . . D 2 0.417 24.963 -22.833 1 70.3 ? C7 GY3 3000 A 1 HETATM 8 N N8 GY3 . . . D 2 0.284 25.992 -23.692 1 76.32 ? N8 GY3 3000 A 1 HETATM 9 C C9 GY3 . . . D 2 1.326 26.167 -24.747 1 74.47 ? C9 GY3 3000 A 1 HETATM 10 C C10 GY3 . . . D 2 0.817 26.694 -26.078 1 79.12 ? C10 GY3 3000 A 1 HETATM 11 O O11 GY3 . . . D 2 -2.284 26.628 -21.701 1 79.22 ? O11 GY3 3000 A 1 HETATM 12 O O12 GY3 . . . D 2 1.325 23.946 -22.938 1 60.24 ? O12 GY3 3000 A 1 HETATM 13 C C19 GY3 . . . D 2 -0.749 24.23 -20.749 1 66.19 ? C19 GY3 3000 A 1 HETATM 14 C C20 GY3 . . . D 2 -0.815 22.825 -20.844 1 66.32 ? C20 GY3 3000 A 1 HETATM 15 C C21 GY3 . . . D 2 -0.936 22.065 -19.679 1 64.73 ? C21 GY3 3000 A 1 HETATM 16 C C22 GY3 . . . D 2 -0.932 22.693 -18.428 1 67.4 ? C22 GY3 3000 A 1 HETATM 17 C C23 GY3 . . . D 2 -0.767 24.085 -18.337 1 59.06 ? C23 GY3 3000 A 1 HETATM 18 C C24 GY3 . . . D 2 -0.697 24.862 -19.496 1 59.42 ? C24 GY3 3000 A 1 HETATM 19 C C25 GY3 . . . D 2 -0.616 26.393 -19.324 1 64.26 ? C25 GY3 3000 A 1 HETATM 20 C C26 GY3 . . . D 2 -1.577 26.919 -18.237 1 59.97 ? C26 GY3 3000 A 1 HETATM 21 C C27 GY3 . . . D 2 -1.032 21.825 -17.159 1 61.32 ? C27 GY3 3000 A 1 HETATM 22 C C28 GY3 . . . D 2 -0.861 22.068 -22.178 1 62.93 ? C28 GY3 3000 A 1 HETATM 23 C C29 GY3 . . . D 2 -2.232 22.226 -22.841 1 63.11 ? C29 GY3 3000 A 1 # _model_server_stats.io_time_ms 91 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 31 _model_server_stats.query_time_ms 314 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 23 #