data_3PH3
#
_model_server_result.job_id            J4Mxw-U_Ma25p8DmbaV-7A 
_model_server_result.datetime_utc      '2024-10-17 05:37:25' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3ph3 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":150}' 
#
_entry.id    3PH3 
#
_exptl.entry_id    3PH3 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              150.13 
_entity.id                          2 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            D-ribose 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            3PH3 
_cell.length_a            69.033 
_cell.length_b            69.033 
_cell.length_c            154.583 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3PH3 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        154 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 32 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
_chem_comp.formula           'C5 H10 O5' 
_chem_comp.formula_weight    150.13 
_chem_comp.id                RB5 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              D-ribose 
_chem_comp.type              d-saccharide 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C5 O5 RB5 sing 277 n n 
C5 C4 RB5 sing 278 n n 
C4 O4 RB5 sing 279 n n 
C4 C3 RB5 sing 280 n n 
C3 O3 RB5 sing 281 n n 
C3 C2 RB5 sing 282 n n 
C2 O2 RB5 sing 283 n n 
C2 C1 RB5 sing 284 n n 
C1 O1 RB5 doub 285 n n 
C5 H51 RB5 sing 286 n n 
C5 H52 RB5 sing 287 n n 
O5 HO5 RB5 sing 288 n n 
C4 H4 RB5 sing 289 n n 
O4 HO4 RB5 sing 290 n n 
C3 H3 RB5 sing 291 n n 
O3 HO3 RB5 sing 292 n n 
C2 H2 RB5 sing 293 n n 
O2 HO2 RB5 sing 294 n n 
C1 H1 RB5 sing 295 n n 
#
_atom_sites.entry_id                     3PH3 
_atom_sites.fract_transf_matrix[1][1]    0.014486 
_atom_sites.fract_transf_matrix[1][2]    0.008363 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.016727 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006469 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 RB5 A 1 150 1 RB5 RB5 . 
D 2 RB5 B 1 150 1 RB5 RB5 . 
E 3 HOH A 1 151 1 HOH HOH . 
E 3 HOH A 2 152 3 HOH HOH . 
E 3 HOH A 3 153 6 HOH HOH . 
E 3 HOH A 4 154 8 HOH HOH . 
E 3 HOH A 5 155 12 HOH HOH . 
E 3 HOH A 6 156 14 HOH HOH . 
E 3 HOH A 7 157 16 HOH HOH . 
E 3 HOH A 8 158 17 HOH HOH . 
E 3 HOH A 9 159 19 HOH HOH . 
E 3 HOH A 10 160 20 HOH HOH . 
E 3 HOH A 11 161 25 HOH HOH . 
E 3 HOH A 12 162 27 HOH HOH . 
E 3 HOH A 13 163 28 HOH HOH . 
E 3 HOH A 14 164 29 HOH HOH . 
E 3 HOH A 15 165 31 HOH HOH . 
E 3 HOH A 16 166 32 HOH HOH . 
E 3 HOH A 17 167 36 HOH HOH . 
E 3 HOH A 18 168 37 HOH HOH . 
E 3 HOH A 19 169 41 HOH HOH . 
E 3 HOH A 20 170 45 HOH HOH . 
E 3 HOH A 21 171 47 HOH HOH . 
E 3 HOH A 22 172 48 HOH HOH . 
E 3 HOH A 23 173 49 HOH HOH . 
E 3 HOH A 24 174 50 HOH HOH . 
E 3 HOH A 25 175 51 HOH HOH . 
E 3 HOH A 26 176 52 HOH HOH . 
E 3 HOH A 27 177 53 HOH HOH . 
E 3 HOH A 28 178 54 HOH HOH . 
E 3 HOH A 29 179 55 HOH HOH . 
E 3 HOH A 30 180 59 HOH HOH . 
E 3 HOH A 31 181 60 HOH HOH . 
E 3 HOH A 32 182 61 HOH HOH . 
E 3 HOH A 33 183 63 HOH HOH . 
E 3 HOH A 34 184 65 HOH HOH . 
E 3 HOH A 35 185 67 HOH HOH . 
E 3 HOH A 36 186 68 HOH HOH . 
E 3 HOH A 37 187 70 HOH HOH . 
E 3 HOH A 38 188 74 HOH HOH . 
E 3 HOH A 39 189 75 HOH HOH . 
E 3 HOH A 40 190 76 HOH HOH . 
E 3 HOH A 41 191 80 HOH HOH . 
E 3 HOH A 42 192 81 HOH HOH . 
E 3 HOH A 43 193 82 HOH HOH . 
E 3 HOH A 44 194 84 HOH HOH . 
E 3 HOH A 45 195 86 HOH HOH . 
E 3 HOH A 46 196 87 HOH HOH . 
E 3 HOH A 47 197 89 HOH HOH . 
E 3 HOH A 48 198 90 HOH HOH . 
E 3 HOH A 49 199 91 HOH HOH . 
E 3 HOH A 50 200 92 HOH HOH . 
E 3 HOH A 51 201 94 HOH HOH . 
E 3 HOH A 52 202 100 HOH HOH . 
E 3 HOH A 53 203 101 HOH HOH . 
E 3 HOH A 54 204 106 HOH HOH . 
E 3 HOH A 55 205 107 HOH HOH . 
E 3 HOH A 56 206 109 HOH HOH . 
E 3 HOH A 57 207 114 HOH HOH . 
E 3 HOH A 58 208 116 HOH HOH . 
E 3 HOH A 59 209 118 HOH HOH . 
E 3 HOH A 60 210 122 HOH HOH . 
E 3 HOH A 61 211 126 HOH HOH . 
E 3 HOH A 62 212 128 HOH HOH . 
E 3 HOH A 63 213 129 HOH HOH . 
E 3 HOH A 64 214 130 HOH HOH . 
E 3 HOH A 65 215 135 HOH HOH . 
E 3 HOH A 66 216 138 HOH HOH . 
E 3 HOH A 67 217 139 HOH HOH . 
E 3 HOH A 68 218 141 HOH HOH . 
E 3 HOH A 69 219 142 HOH HOH . 
E 3 HOH A 70 220 144 HOH HOH . 
E 3 HOH A 71 221 146 HOH HOH . 
E 3 HOH A 72 222 131 HOH HOH . 
F 3 HOH B 1 151 2 HOH HOH . 
F 3 HOH B 2 152 4 HOH HOH . 
F 3 HOH B 3 153 5 HOH HOH . 
F 3 HOH B 4 154 7 HOH HOH . 
F 3 HOH B 5 155 9 HOH HOH . 
F 3 HOH B 6 156 10 HOH HOH . 
F 3 HOH B 7 157 11 HOH HOH . 
F 3 HOH B 8 158 13 HOH HOH . 
F 3 HOH B 9 159 15 HOH HOH . 
F 3 HOH B 10 160 18 HOH HOH . 
F 3 HOH B 11 161 21 HOH HOH . 
F 3 HOH B 12 162 22 HOH HOH . 
F 3 HOH B 13 163 23 HOH HOH . 
F 3 HOH B 14 164 24 HOH HOH . 
F 3 HOH B 15 165 26 HOH HOH . 
F 3 HOH B 16 166 30 HOH HOH . 
F 3 HOH B 17 167 33 HOH HOH . 
F 3 HOH B 18 168 34 HOH HOH . 
F 3 HOH B 19 169 35 HOH HOH . 
F 3 HOH B 20 170 38 HOH HOH . 
F 3 HOH B 21 171 39 HOH HOH . 
F 3 HOH B 22 172 40 HOH HOH . 
F 3 HOH B 23 173 42 HOH HOH . 
F 3 HOH B 24 174 43 HOH HOH . 
F 3 HOH B 25 175 44 HOH HOH . 
F 3 HOH B 26 176 46 HOH HOH . 
F 3 HOH B 27 177 56 HOH HOH . 
F 3 HOH B 28 178 57 HOH HOH . 
F 3 HOH B 29 179 58 HOH HOH . 
F 3 HOH B 30 180 62 HOH HOH . 
F 3 HOH B 31 181 64 HOH HOH . 
F 3 HOH B 32 182 66 HOH HOH . 
F 3 HOH B 33 183 69 HOH HOH . 
F 3 HOH B 34 184 71 HOH HOH . 
F 3 HOH B 35 185 72 HOH HOH . 
F 3 HOH B 36 186 73 HOH HOH . 
F 3 HOH B 37 187 77 HOH HOH . 
F 3 HOH B 38 188 78 HOH HOH . 
F 3 HOH B 39 189 79 HOH HOH . 
F 3 HOH B 40 190 83 HOH HOH . 
F 3 HOH B 41 191 85 HOH HOH . 
F 3 HOH B 42 192 88 HOH HOH . 
F 3 HOH B 43 193 93 HOH HOH . 
F 3 HOH B 44 194 95 HOH HOH . 
F 3 HOH B 45 195 96 HOH HOH . 
F 3 HOH B 46 196 97 HOH HOH . 
F 3 HOH B 47 197 98 HOH HOH . 
F 3 HOH B 48 198 99 HOH HOH . 
F 3 HOH B 49 199 102 HOH HOH . 
F 3 HOH B 50 200 103 HOH HOH . 
F 3 HOH B 51 201 104 HOH HOH . 
F 3 HOH B 52 202 105 HOH HOH . 
F 3 HOH B 53 203 108 HOH HOH . 
F 3 HOH B 54 204 110 HOH HOH . 
F 3 HOH B 55 205 111 HOH HOH . 
F 3 HOH B 56 206 112 HOH HOH . 
F 3 HOH B 57 207 113 HOH HOH . 
F 3 HOH B 58 208 115 HOH HOH . 
F 3 HOH B 59 209 117 HOH HOH . 
F 3 HOH B 60 210 119 HOH HOH . 
F 3 HOH B 61 211 120 HOH HOH . 
F 3 HOH B 62 212 121 HOH HOH . 
F 3 HOH B 63 213 123 HOH HOH . 
F 3 HOH B 64 214 124 HOH HOH . 
F 3 HOH B 65 215 125 HOH HOH . 
F 3 HOH B 66 216 127 HOH HOH . 
F 3 HOH B 67 217 132 HOH HOH . 
F 3 HOH B 68 218 133 HOH HOH . 
F 3 HOH B 69 219 136 HOH HOH . 
F 3 HOH B 70 220 137 HOH HOH . 
F 3 HOH B 71 221 140 HOH HOH . 
F 3 HOH B 72 222 150 HOH HOH . 
F 3 HOH B 73 223 145 HOH HOH . 
F 3 HOH B 74 224 147 HOH HOH . 
F 3 HOH B 75 225 148 HOH HOH . 
F 3 HOH B 76 226 149 HOH HOH . 
F 3 HOH B 77 227 143 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C5 RB5 . . . D 2 17.326 -46.296 -14.194 1 60.61 ? C5 RB5 150 B 1 
HETATM 2 O O5 RB5 . . . D 2 16.375 -47.335 -13.953 1 61.92 ? O5 RB5 150 B 1 
HETATM 3 C C4 RB5 . . . D 2 16.777 -44.962 -13.691 1 61.43 ? C4 RB5 150 B 1 
HETATM 4 O O4 RB5 . . . D 2 15.688 -45.251 -12.787 1 63.44 ? O4 RB5 150 B 1 
HETATM 5 C C3 RB5 . . . D 2 17.865 -44.023 -13.074 1 59.81 ? C3 RB5 150 B 1 
HETATM 6 O O3 RB5 . . . D 2 19.078 -44.252 -13.824 1 51.8 ? O3 RB5 150 B 1 
HETATM 7 C C2 RB5 . . . D 2 17.564 -42.484 -13.067 1 57.91 ? C2 RB5 150 B 1 
HETATM 8 O O2 RB5 . . . D 2 16.714 -42.274 -14.213 1 56.44 ? O2 RB5 150 B 1 
HETATM 9 C C1 RB5 . . . D 2 17.117 -41.688 -11.742 1 57.53 ? C1 RB5 150 B 1 
HETATM 10 O O1 RB5 . . . D 2 16.361 -40.387 -11.828 1 44.99 ? O1 RB5 150 B 1 
#
_model_server_stats.io_time_ms              61 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           260 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           10 
#