data_3PHB # _model_server_result.job_id i347Z6-8e8yZN-SF91KpHQ _model_server_result.datetime_utc '2024-11-07 16:38:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3phb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":292}' # _entry.id 3PHB # _exptl.entry_id 3PHB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 94.971 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHATE ION' _entity.pdbx_number_of_molecules 12 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90.33 _cell.angle_gamma 90 _cell.entry_id 3PHB _cell.length_a 269.27 _cell.length_b 52.632 _cell.length_c 128.119 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3PHB _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA trimeric 3 author_and_software_defined_assembly 1 PISA trimeric 3 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,F,G,H,I,J,K,L,U,V,W,X,Y,Z,DA 1 1 C,D,E,M,N,O,P,Q,R,S,T,AA,BA,CA 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 H N N ? 3 I N N ? 3 K N N ? 3 L N N ? 3 M N N ? 3 O N N ? 3 P N N ? 3 R N N ? 3 T N N ? 3 U N N ? 3 V N N ? 3 X N N # _chem_comp.formula 'O4 P -3' _chem_comp.formula_weight 94.971 _chem_comp.id PO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1 PO4 doub 299 n n P O2 PO4 sing 300 n n P O3 PO4 sing 301 n n P O4 PO4 sing 302 n n # _atom_sites.entry_id 3PHB _atom_sites.fract_transf_matrix[1][1] 0.003714 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000021 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007805 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 2 IM5 E 1 290 1 IM5 IM5 . H 3 PO4 E 1 291 2 PO4 PO4 . I 3 PO4 E 1 292 8 PO4 PO4 . J 2 IM5 Q 1 290 1 IM5 IM5 . K 3 PO4 Q 1 291 2 PO4 PO4 . L 3 PO4 Q 1 292 11 PO4 PO4 . M 3 PO4 S 1 290 9 PO4 PO4 . N 2 IM5 S 1 291 1 IM5 IM5 . O 3 PO4 S 1 292 2 PO4 PO4 . P 3 PO4 T 1 290 10 PO4 PO4 . Q 2 IM5 T 1 291 1 IM5 IM5 . R 3 PO4 T 1 292 2 PO4 PO4 . S 2 IM5 U 1 290 1 IM5 IM5 . T 3 PO4 U 1 291 2 PO4 PO4 . U 3 PO4 Y 1 290 7 PO4 PO4 . V 3 PO4 Y 1 291 12 PO4 PO4 . W 2 IM5 Y 1 292 1 IM5 IM5 . X 3 PO4 Y 1 293 2 PO4 PO4 . Y 4 HOH E 1 293 6 HOH HOH . Y 4 HOH E 2 294 8 HOH HOH . Y 4 HOH E 3 295 15 HOH HOH . Y 4 HOH E 4 296 16 HOH HOH . Y 4 HOH E 5 297 38 HOH HOH . Y 4 HOH E 6 298 50 HOH HOH . Y 4 HOH E 7 299 58 HOH HOH . Y 4 HOH E 8 300 63 HOH HOH . Y 4 HOH E 9 301 64 HOH HOH . Y 4 HOH E 10 302 65 HOH HOH . Y 4 HOH E 11 303 66 HOH HOH . Y 4 HOH E 12 304 67 HOH HOH . Y 4 HOH E 13 305 69 HOH HOH . Y 4 HOH E 14 306 70 HOH HOH . Y 4 HOH E 15 307 71 HOH HOH . Y 4 HOH E 16 308 79 HOH HOH . Z 4 HOH Q 1 293 7 HOH HOH . Z 4 HOH Q 2 294 12 HOH HOH . Z 4 HOH Q 3 295 18 HOH HOH . Z 4 HOH Q 4 296 20 HOH HOH . Z 4 HOH Q 5 297 22 HOH HOH . Z 4 HOH Q 6 298 26 HOH HOH . Z 4 HOH Q 7 299 28 HOH HOH . Z 4 HOH Q 8 300 32 HOH HOH . Z 4 HOH Q 9 301 44 HOH HOH . Z 4 HOH Q 10 302 48 HOH HOH . Z 4 HOH Q 11 303 52 HOH HOH . Z 4 HOH Q 12 304 53 HOH HOH . Z 4 HOH Q 13 305 72 HOH HOH . Z 4 HOH Q 14 306 73 HOH HOH . Z 4 HOH Q 15 307 75 HOH HOH . Z 4 HOH Q 16 308 76 HOH HOH . Z 4 HOH Q 17 309 77 HOH HOH . Z 4 HOH Q 18 310 78 HOH HOH . AA 4 HOH S 1 293 1 HOH HOH . AA 4 HOH S 2 294 23 HOH HOH . AA 4 HOH S 3 295 27 HOH HOH . AA 4 HOH S 4 296 30 HOH HOH . AA 4 HOH S 5 297 34 HOH HOH . AA 4 HOH S 6 298 35 HOH HOH . AA 4 HOH S 7 299 43 HOH HOH . AA 4 HOH S 8 300 45 HOH HOH . AA 4 HOH S 9 301 54 HOH HOH . AA 4 HOH S 10 302 60 HOH HOH . AA 4 HOH S 11 303 61 HOH HOH . AA 4 HOH S 12 304 80 HOH HOH . AA 4 HOH S 13 305 81 HOH HOH . AA 4 HOH S 14 306 82 HOH HOH . AA 4 HOH S 15 307 92 HOH HOH . BA 4 HOH T 1 293 5 HOH HOH . BA 4 HOH T 2 294 17 HOH HOH . BA 4 HOH T 3 295 21 HOH HOH . BA 4 HOH T 4 296 24 HOH HOH . BA 4 HOH T 5 297 33 HOH HOH . BA 4 HOH T 6 298 36 HOH HOH . BA 4 HOH T 7 299 51 HOH HOH . BA 4 HOH T 8 300 55 HOH HOH . BA 4 HOH T 9 301 83 HOH HOH . BA 4 HOH T 10 302 93 HOH HOH . CA 4 HOH U 1 292 3 HOH HOH . CA 4 HOH U 2 293 9 HOH HOH . CA 4 HOH U 3 294 10 HOH HOH . CA 4 HOH U 4 295 11 HOH HOH . CA 4 HOH U 5 296 31 HOH HOH . CA 4 HOH U 6 297 37 HOH HOH . CA 4 HOH U 7 298 40 HOH HOH . CA 4 HOH U 8 299 41 HOH HOH . CA 4 HOH U 9 300 42 HOH HOH . CA 4 HOH U 10 301 47 HOH HOH . CA 4 HOH U 11 302 56 HOH HOH . CA 4 HOH U 12 303 84 HOH HOH . CA 4 HOH U 13 304 85 HOH HOH . DA 4 HOH Y 1 294 2 HOH HOH . DA 4 HOH Y 2 295 4 HOH HOH . DA 4 HOH Y 3 296 13 HOH HOH . DA 4 HOH Y 4 297 19 HOH HOH . DA 4 HOH Y 5 298 25 HOH HOH . DA 4 HOH Y 6 299 29 HOH HOH . DA 4 HOH Y 7 300 49 HOH HOH . DA 4 HOH Y 8 301 57 HOH HOH . DA 4 HOH Y 9 302 59 HOH HOH . DA 4 HOH Y 10 303 68 HOH HOH . DA 4 HOH Y 11 304 74 HOH HOH . DA 4 HOH Y 12 305 87 HOH HOH . DA 4 HOH Y 13 306 88 HOH HOH . DA 4 HOH Y 14 307 89 HOH HOH . DA 4 HOH Y 15 308 90 HOH HOH . DA 4 HOH Y 16 309 91 HOH HOH . DA 4 HOH Y 17 310 94 HOH HOH . DA 4 HOH Y 18 311 95 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P PO4 . . . I 3 -23.191 -9.651 -16.103 1 64.58 ? P PO4 292 E 1 HETATM 2 O O1 PO4 . . . I 3 -21.69 -9.502 -15.942 1 64.58 ? O1 PO4 292 E 1 HETATM 3 O O2 PO4 . . . I 3 -23.577 -10.024 -17.512 1 65.82 ? O2 PO4 292 E 1 HETATM 4 O O3 PO4 . . . I 3 -23.671 -10.759 -15.203 1 67.56 ? O3 PO4 292 E 1 HETATM 5 O O4 PO4 . . . I 3 -23.898 -8.359 -15.725 1 66.37 ? O4 PO4 292 E 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 32 _model_server_stats.query_time_ms 326 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 5 #