data_3PHD # _model_server_result.job_id sZPOBFlizd4NsM1d0MK1Jw _model_server_result.datetime_utc '2024-11-08 12:42:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3phd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"S","auth_seq_id":2001}' # _entry.id 3PHD # _exptl.entry_id 3PHD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 12 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3PHD _cell.length_a 133.748 _cell.length_b 133.748 _cell.length_c 118.768 _cell.Z_PDB 32 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3PHD _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details octameric _pdbx_struct_assembly.oligomeric_count 8 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 I N N ? 3 J N N ? 3 K N N ? 3 L N N ? 3 M N N ? 3 N N N ? 3 O N N ? 3 P N N ? 3 Q N N ? 3 R N N ? 3 S N N ? 3 T N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 5 A CYS 5 1_555 K ZN ZN . A ZN 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.305 ? metalc ? metalc2 A ND1 HIS 7 A HIS 7 1_555 K ZN ZN . A ZN 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? metalc ? metalc3 A SG CYS 25 A CYS 25 1_555 J ZN ZN . A ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.358 ? metalc ? metalc4 A SG CYS 28 A CYS 28 1_555 J ZN ZN . A ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.334 ? metalc ? metalc5 A SG CYS 37 A CYS 37 1_555 I ZN ZN . A ZN 1000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.207 ? metalc ? metalc6 A SG CYS 40 A CYS 40 1_555 I ZN ZN . A ZN 1000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.305 ? metalc ? metalc7 A SG CYS 45 A CYS 45 1_555 J ZN ZN . A ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.317 ? metalc ? metalc8 A ND1 HIS 52 A HIS 52 1_555 J ZN ZN . A ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.104 ? metalc ? metalc9 A NE2 HIS 56 A HIS 56 1_555 I ZN ZN . A ZN 1000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.992 ? metalc ? metalc10 A ND1 HIS 62 A HIS 62 1_555 I ZN ZN . A ZN 1000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.906 ? metalc ? metalc11 A SG CYS 75 A CYS 75 1_555 K ZN ZN . A ZN 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.269 ? metalc ? metalc12 A SG CYS 78 A CYS 78 1_555 K ZN ZN . A ZN 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.238 ? metalc ? metalc13 B SG CYS 5 B CYS 5 1_555 N ZN ZN . B ZN 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.394 ? metalc ? metalc14 B ND1 HIS 7 B HIS 7 1_555 N ZN ZN . B ZN 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.989 ? metalc ? metalc15 B SG CYS 25 B CYS 25 1_555 M ZN ZN . B ZN 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.219 ? metalc ? metalc16 B SG CYS 28 B CYS 28 1_555 M ZN ZN . B ZN 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.416 ? metalc ? metalc17 B SG CYS 37 B CYS 37 1_555 L ZN ZN . B ZN 2000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.202 ? metalc ? metalc18 B SG CYS 40 B CYS 40 1_555 L ZN ZN . B ZN 2000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.214 ? metalc ? metalc19 B SG CYS 45 B CYS 45 1_555 M ZN ZN . B ZN 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.173 ? metalc ? metalc20 B ND1 HIS 52 B HIS 52 1_555 M ZN ZN . B ZN 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? metalc ? metalc21 B NE2 HIS 56 B HIS 56 1_555 L ZN ZN . B ZN 2000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? metalc ? metalc22 B ND1 HIS 62 B HIS 62 1_555 L ZN ZN . B ZN 2000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.953 ? metalc ? metalc23 B SG CYS 75 B CYS 75 1_555 N ZN ZN . B ZN 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.223 ? metalc ? metalc24 B SG CYS 78 B CYS 78 1_555 N ZN ZN . B ZN 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.182 ? metalc ? metalc25 C SG CYS 5 C CYS 5 1_555 Q ZN ZN . C ZN 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.249 ? metalc ? metalc26 C ND1 HIS 7 C HIS 7 1_555 Q ZN ZN . C ZN 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.09 ? metalc ? metalc27 C SG CYS 25 C CYS 25 1_555 P ZN ZN . C ZN 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.313 ? metalc ? metalc28 C SG CYS 28 C CYS 28 1_555 P ZN ZN . C ZN 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.391 ? metalc ? metalc29 C SG CYS 37 C CYS 37 1_555 O ZN ZN . C ZN 2000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.144 ? metalc ? metalc30 C SG CYS 40 C CYS 40 1_555 O ZN ZN . C ZN 2000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.257 ? metalc ? metalc31 C SG CYS 45 C CYS 45 1_555 P ZN ZN . C ZN 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.291 ? metalc ? metalc32 C ND1 HIS 52 C HIS 52 1_555 P ZN ZN . C ZN 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.926 ? metalc ? metalc33 C NE2 HIS 56 C HIS 56 1_555 O ZN ZN . C ZN 2000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? metalc ? metalc34 C ND1 HIS 62 C HIS 62 1_555 O ZN ZN . C ZN 2000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.006 ? metalc ? metalc35 C SG CYS 75 C CYS 75 1_555 Q ZN ZN . C ZN 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.279 ? metalc ? metalc36 C SG CYS 78 C CYS 78 1_555 Q ZN ZN . C ZN 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.249 ? metalc ? metalc37 D SG CYS 5 D CYS 5 1_555 T ZN ZN . D ZN 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.413 ? metalc ? metalc38 D ND1 HIS 7 D HIS 7 1_555 T ZN ZN . D ZN 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.966 ? metalc ? metalc39 D SG CYS 25 D CYS 25 1_555 S ZN ZN . D ZN 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.342 ? metalc ? metalc40 D SG CYS 28 D CYS 28 1_555 S ZN ZN . D ZN 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.347 ? metalc ? metalc41 D SG CYS 37 D CYS 37 1_555 R ZN ZN . D ZN 2000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.136 ? metalc ? metalc42 D SG CYS 40 D CYS 40 1_555 R ZN ZN . D ZN 2000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.252 ? metalc ? metalc43 D SG CYS 45 D CYS 45 1_555 S ZN ZN . D ZN 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.227 ? metalc ? metalc44 D ND1 HIS 52 D HIS 52 1_555 S ZN ZN . D ZN 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.014 ? metalc ? metalc45 D NE2 HIS 56 D HIS 56 1_555 R ZN ZN . D ZN 2000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? metalc ? metalc46 D ND1 HIS 62 D HIS 62 1_555 R ZN ZN . D ZN 2000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.978 ? metalc ? metalc47 D SG CYS 75 D CYS 75 1_555 T ZN ZN . D ZN 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.292 ? metalc ? metalc48 D SG CYS 78 D CYS 78 1_555 T ZN ZN . D ZN 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.162 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3PHD _atom_sites.fract_transf_matrix[1][1] 0.007477 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007477 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00842 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 3 ZN A 1 1000 1000 ZN ZN . J 3 ZN A 1 1001 1001 ZN ZN . K 3 ZN A 1 1002 1002 ZN ZN . L 3 ZN B 1 2000 2000 ZN ZN . M 3 ZN B 1 2001 2001 ZN ZN . N 3 ZN B 1 2002 2002 ZN ZN . O 3 ZN C 1 2000 2000 ZN ZN . P 3 ZN C 1 2001 2001 ZN ZN . Q 3 ZN C 1 2002 2002 ZN ZN . R 3 ZN D 1 2000 2000 ZN ZN . S 3 ZN D 1 2001 2001 ZN ZN . T 3 ZN D 1 2002 2002 ZN ZN . U 4 HOH B 1 108 3 HOH HOH . V 4 HOH G 1 77 2 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id S _atom_site.label_entity_id 3 _atom_site.Cartn_x -24.299 _atom_site.Cartn_y 31.292 _atom_site.Cartn_z 37.324 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 71.18 _atom_site.pdbx_formal_charge 2 _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 2001 _atom_site.auth_asym_id D _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 322 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #