data_3PHI
#
_model_server_result.job_id            SwTws9srutOwSZ75O-5mAg 
_model_server_result.datetime_utc      '2025-02-27 22:55:03' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3phi 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":500}' 
#
_entry.id    3PHI 
#
_exptl.entry_id    3PHI 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              174.151 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(3R,4S,5R)-3,4,5-TRIHYDROXYCYCLOHEX-1-ENE-1-CARBOXYLIC ACID' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          97.61 
_cell.angle_gamma         90 
_cell.entry_id            3PHI 
_cell.length_a            44.99 
_cell.length_b            48.391 
_cell.length_c            123.002 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3PHI 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,G 1 1 
B,E,F,H 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 E N N 
#
_chem_comp.formula           'C7 H10 O5' 
_chem_comp.formula_weight    174.151 
_chem_comp.id                SKM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(3R,4S,5R)-3,4,5-TRIHYDROXYCYCLOHEX-1-ENE-1-CARBOXYLIC ACID' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     SHIKIMATE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O12 C8 SKM sing 372 n n 
O12 H12 SKM sing 373 n n 
C8 C6 SKM sing 374 n n 
C8 C9 SKM sing 375 n n 
C8 H8 SKM sing 376 n n 
C6 O7 SKM sing 377 n n 
C6 C5 SKM sing 378 n n 
C6 H6 SKM sing 379 n n 
O7 HO7 SKM sing 380 n n 
C5 C4 SKM sing 381 n n 
C5 H51 SKM sing 382 n n 
C5 H52 SKM sing 383 n n 
C4 C1 SKM sing 384 n n 
C4 C10 SKM doub 385 n n 
C1 O2 SKM sing 386 n n 
C1 O3 SKM doub 387 n n 
O2 HO2 SKM sing 388 n n 
C10 C9 SKM sing 389 n n 
C10 H10 SKM sing 390 n n 
C9 O11 SKM sing 391 n n 
C9 H9 SKM sing 392 n n 
O11 H11 SKM sing 393 n n 
#
_atom_sites.entry_id                     3PHI 
_atom_sites.fract_transf_matrix[1][1]    0.022227 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.00297 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.020665 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008202 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 SKM A 1 500 500 SKM SKM . 
D 3 NDP A 1 1411 1411 NDP NDP . 
E 2 SKM B 1 500 500 SKM SKM . 
F 3 NDP B 1 1411 1411 NDP NDP . 
G 4 HOH A 1 270 1 HOH HOH . 
G 4 HOH A 2 271 2 HOH HOH . 
G 4 HOH A 3 272 3 HOH HOH . 
G 4 HOH A 4 273 5 HOH HOH . 
G 4 HOH A 5 274 6 HOH HOH . 
G 4 HOH A 6 275 7 HOH HOH . 
G 4 HOH A 7 276 10 HOH HOH . 
G 4 HOH A 8 277 12 HOH HOH . 
G 4 HOH A 9 278 13 HOH HOH . 
G 4 HOH A 10 279 16 HOH HOH . 
G 4 HOH A 11 280 22 HOH HOH . 
G 4 HOH A 12 281 23 HOH HOH . 
G 4 HOH A 13 282 25 HOH HOH . 
G 4 HOH A 14 283 26 HOH HOH . 
G 4 HOH A 15 284 27 HOH HOH . 
G 4 HOH A 16 285 29 HOH HOH . 
G 4 HOH A 17 286 30 HOH HOH . 
G 4 HOH A 18 287 32 HOH HOH . 
G 4 HOH A 19 288 34 HOH HOH . 
G 4 HOH A 20 289 35 HOH HOH . 
G 4 HOH A 21 290 39 HOH HOH . 
G 4 HOH A 22 291 41 HOH HOH . 
G 4 HOH A 23 292 42 HOH HOH . 
G 4 HOH A 24 293 46 HOH HOH . 
G 4 HOH A 25 294 47 HOH HOH . 
G 4 HOH A 26 295 51 HOH HOH . 
G 4 HOH A 27 296 59 HOH HOH . 
G 4 HOH A 28 297 61 HOH HOH . 
G 4 HOH A 29 298 62 HOH HOH . 
G 4 HOH A 30 299 63 HOH HOH . 
G 4 HOH A 31 300 64 HOH HOH . 
G 4 HOH A 32 301 65 HOH HOH . 
G 4 HOH A 33 302 66 HOH HOH . 
G 4 HOH A 34 303 67 HOH HOH . 
G 4 HOH A 35 304 69 HOH HOH . 
G 4 HOH A 36 305 71 HOH HOH . 
G 4 HOH A 37 306 72 HOH HOH . 
G 4 HOH A 38 307 73 HOH HOH . 
G 4 HOH A 39 308 74 HOH HOH . 
G 4 HOH A 40 309 75 HOH HOH . 
G 4 HOH A 41 310 78 HOH HOH . 
G 4 HOH A 42 311 79 HOH HOH . 
G 4 HOH A 43 312 83 HOH HOH . 
G 4 HOH A 44 313 84 HOH HOH . 
G 4 HOH A 45 314 85 HOH HOH . 
G 4 HOH A 46 315 86 HOH HOH . 
G 4 HOH A 47 316 87 HOH HOH . 
G 4 HOH A 48 317 88 HOH HOH . 
G 4 HOH A 49 318 89 HOH HOH . 
G 4 HOH A 50 319 91 HOH HOH . 
G 4 HOH A 51 320 92 HOH HOH . 
G 4 HOH A 52 321 96 HOH HOH . 
G 4 HOH A 53 322 97 HOH HOH . 
G 4 HOH A 54 323 98 HOH HOH . 
G 4 HOH A 55 324 100 HOH HOH . 
G 4 HOH A 56 325 101 HOH HOH . 
G 4 HOH A 57 326 103 HOH HOH . 
G 4 HOH A 58 327 105 HOH HOH . 
G 4 HOH A 59 328 106 HOH HOH . 
G 4 HOH A 60 329 107 HOH HOH . 
G 4 HOH A 61 330 110 HOH HOH . 
G 4 HOH A 62 331 111 HOH HOH . 
G 4 HOH A 63 332 112 HOH HOH . 
G 4 HOH A 64 333 113 HOH HOH . 
G 4 HOH A 65 334 114 HOH HOH . 
G 4 HOH A 66 335 118 HOH HOH . 
G 4 HOH A 67 336 119 HOH HOH . 
G 4 HOH A 68 337 121 HOH HOH . 
G 4 HOH A 69 338 123 HOH HOH . 
G 4 HOH A 70 339 125 HOH HOH . 
G 4 HOH A 71 340 129 HOH HOH . 
G 4 HOH A 72 341 130 HOH HOH . 
G 4 HOH A 73 342 132 HOH HOH . 
G 4 HOH A 74 343 136 HOH HOH . 
G 4 HOH A 75 344 137 HOH HOH . 
G 4 HOH A 76 345 140 HOH HOH . 
G 4 HOH A 77 346 141 HOH HOH . 
G 4 HOH A 78 347 143 HOH HOH . 
G 4 HOH A 79 348 144 HOH HOH . 
G 4 HOH A 80 349 145 HOH HOH . 
G 4 HOH A 81 350 146 HOH HOH . 
G 4 HOH A 82 351 147 HOH HOH . 
G 4 HOH A 83 352 148 HOH HOH . 
G 4 HOH A 84 353 149 HOH HOH . 
G 4 HOH A 85 354 152 HOH HOH . 
G 4 HOH A 86 355 153 HOH HOH . 
G 4 HOH A 87 356 155 HOH HOH . 
G 4 HOH A 88 357 157 HOH HOH . 
G 4 HOH A 89 358 158 HOH HOH . 
G 4 HOH A 90 359 159 HOH HOH . 
G 4 HOH A 91 360 160 HOH HOH . 
G 4 HOH A 92 361 164 HOH HOH . 
H 4 HOH B 1 270 4 HOH HOH . 
H 4 HOH B 2 271 8 HOH HOH . 
H 4 HOH B 3 272 9 HOH HOH . 
H 4 HOH B 4 273 11 HOH HOH . 
H 4 HOH B 5 274 14 HOH HOH . 
H 4 HOH B 6 275 15 HOH HOH . 
H 4 HOH B 7 276 17 HOH HOH . 
H 4 HOH B 8 277 18 HOH HOH . 
H 4 HOH B 9 278 19 HOH HOH . 
H 4 HOH B 10 279 20 HOH HOH . 
H 4 HOH B 11 280 21 HOH HOH . 
H 4 HOH B 12 281 24 HOH HOH . 
H 4 HOH B 13 282 28 HOH HOH . 
H 4 HOH B 14 283 31 HOH HOH . 
H 4 HOH B 15 284 33 HOH HOH . 
H 4 HOH B 16 285 36 HOH HOH . 
H 4 HOH B 17 286 37 HOH HOH . 
H 4 HOH B 18 287 38 HOH HOH . 
H 4 HOH B 19 288 40 HOH HOH . 
H 4 HOH B 20 289 43 HOH HOH . 
H 4 HOH B 21 290 44 HOH HOH . 
H 4 HOH B 22 291 45 HOH HOH . 
H 4 HOH B 23 292 48 HOH HOH . 
H 4 HOH B 24 293 49 HOH HOH . 
H 4 HOH B 25 294 50 HOH HOH . 
H 4 HOH B 26 295 52 HOH HOH . 
H 4 HOH B 27 296 53 HOH HOH . 
H 4 HOH B 28 297 54 HOH HOH . 
H 4 HOH B 29 298 55 HOH HOH . 
H 4 HOH B 30 299 56 HOH HOH . 
H 4 HOH B 31 300 57 HOH HOH . 
H 4 HOH B 32 301 58 HOH HOH . 
H 4 HOH B 33 302 60 HOH HOH . 
H 4 HOH B 34 303 68 HOH HOH . 
H 4 HOH B 35 304 70 HOH HOH . 
H 4 HOH B 36 305 76 HOH HOH . 
H 4 HOH B 37 306 77 HOH HOH . 
H 4 HOH B 38 307 80 HOH HOH . 
H 4 HOH B 39 308 81 HOH HOH . 
H 4 HOH B 40 309 82 HOH HOH . 
H 4 HOH B 41 310 90 HOH HOH . 
H 4 HOH B 42 311 93 HOH HOH . 
H 4 HOH B 43 312 94 HOH HOH . 
H 4 HOH B 44 313 95 HOH HOH . 
H 4 HOH B 45 314 99 HOH HOH . 
H 4 HOH B 46 315 102 HOH HOH . 
H 4 HOH B 47 316 104 HOH HOH . 
H 4 HOH B 48 317 108 HOH HOH . 
H 4 HOH B 49 318 109 HOH HOH . 
H 4 HOH B 50 319 115 HOH HOH . 
H 4 HOH B 51 320 116 HOH HOH . 
H 4 HOH B 52 321 117 HOH HOH . 
H 4 HOH B 53 322 120 HOH HOH . 
H 4 HOH B 54 323 122 HOH HOH . 
H 4 HOH B 55 324 124 HOH HOH . 
H 4 HOH B 56 325 126 HOH HOH . 
H 4 HOH B 57 326 127 HOH HOH . 
H 4 HOH B 58 327 128 HOH HOH . 
H 4 HOH B 59 328 131 HOH HOH . 
H 4 HOH B 60 329 133 HOH HOH . 
H 4 HOH B 61 330 134 HOH HOH . 
H 4 HOH B 62 331 135 HOH HOH . 
H 4 HOH B 63 332 138 HOH HOH . 
H 4 HOH B 64 333 139 HOH HOH . 
H 4 HOH B 65 334 142 HOH HOH . 
H 4 HOH B 66 335 150 HOH HOH . 
H 4 HOH B 67 336 151 HOH HOH . 
H 4 HOH B 68 337 154 HOH HOH . 
H 4 HOH B 69 338 156 HOH HOH . 
H 4 HOH B 70 339 161 HOH HOH . 
H 4 HOH B 71 340 162 HOH HOH . 
H 4 HOH B 72 341 163 HOH HOH . 
H 4 HOH B 73 342 165 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O12 SKM . . . E 2 19.933 -21.922 15.192 1 29.8 ? O12 SKM 500 B 1 
HETATM 2 C C8 SKM . . . E 2 19.175 -22.422 16.306 1 27.01 ? C8 SKM 500 B 1 
HETATM 3 C C6 SKM . . . E 2 20.05 -22.813 17.501 1 27.37 ? C6 SKM 500 B 1 
HETATM 4 O O7 SKM . . . E 2 20.976 -23.816 17.145 1 26.98 ? O7 SKM 500 B 1 
HETATM 5 C C5 SKM . . . E 2 19.224 -23.431 18.621 1 26.53 ? C5 SKM 500 B 1 
HETATM 6 C C4 SKM . . . E 2 17.958 -22.641 18.889 1 31.81 ? C4 SKM 500 B 1 
HETATM 7 C C1 SKM . . . E 2 17.224 -22.834 20.146 1 32.52 ? C1 SKM 500 B 1 
HETATM 8 O O2 SKM . . . E 2 17.677 -23.637 21.001 1 27.46 ? O2 SKM 500 B 1 
HETATM 9 O O3 SKM . . . E 2 16.169 -22.179 20.326 1 32.24 ? O3 SKM 500 B 1 
HETATM 10 C C10 SKM . . . E 2 17.525 -21.692 18.057 1 28.01 ? C10 SKM 500 B 1 
HETATM 11 C C9 SKM . . . E 2 18.195 -21.352 16.74 1 31.23 ? C9 SKM 500 B 1 
HETATM 12 O O11 SKM . . . E 2 18.851 -20.087 16.889 1 36.28 ? O11 SKM 500 B 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           330 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           12 
#