data_3PHJ
#
_model_server_result.job_id            MAKLmNQIoFG0cppWm-a1EQ 
_model_server_result.datetime_utc      '2024-11-25 09:28:42' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3phj 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":500}' 
#
_entry.id    3PHJ 
#
_exptl.entry_id    3PHJ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              174.151 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            3-DEHYDROSHIKIMATE 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          97.63 
_cell.angle_gamma         90 
_cell.entry_id            3PHJ 
_cell.length_a            44.593 
_cell.length_b            47.156 
_cell.length_c            124.124 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3PHJ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,E 1 1 
B,D,F 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
_chem_comp.formula           'C7 H10 O5' 
_chem_comp.formula_weight    174.151 
_chem_comp.id                DHK 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              3-DEHYDROSHIKIMATE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C2 C3 DHK doub 83 n n 
C2 C1 DHK sing 84 n n 
C2 H2 DHK sing 85 n n 
C3 O3 DHK sing 86 n n 
C3 C4 DHK sing 87 n n 
O3 H3 DHK sing 88 n n 
C4 O4 DHK sing 89 n n 
C4 C5 DHK sing 90 n n 
C4 H4 DHK sing 91 n n 
O4 HA DHK sing 92 n n 
C5 C6 DHK sing 93 n n 
C5 O5 DHK sing 94 n n 
C5 H5 DHK sing 95 n n 
C1 C6 DHK sing 96 n n 
C1 C DHK sing 97 n n 
C1 H1 DHK sing 98 n n 
C6 H6C1 DHK sing 99 n n 
C6 H6C2 DHK sing 100 n n 
C O1 DHK doub 101 n n 
C O2 DHK sing 102 n n 
O2 HC DHK sing 103 n n 
O5 HB DHK sing 104 n n 
#
_atom_sites.entry_id                     3PHJ 
_atom_sites.fract_transf_matrix[1][1]    0.022425 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.003004 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.021206 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008128 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 DHK A 1 500 500 DHK DHK . 
D 2 DHK B 1 500 500 DHK DHK . 
E 3 HOH A 1 270 1 HOH HOH . 
E 3 HOH A 2 271 2 HOH HOH . 
E 3 HOH A 3 272 5 HOH HOH . 
E 3 HOH A 4 273 6 HOH HOH . 
E 3 HOH A 5 274 7 HOH HOH . 
E 3 HOH A 6 275 9 HOH HOH . 
E 3 HOH A 7 276 10 HOH HOH . 
E 3 HOH A 8 277 11 HOH HOH . 
E 3 HOH A 9 278 12 HOH HOH . 
E 3 HOH A 10 279 13 HOH HOH . 
E 3 HOH A 11 280 14 HOH HOH . 
E 3 HOH A 12 281 17 HOH HOH . 
E 3 HOH A 13 282 18 HOH HOH . 
E 3 HOH A 14 283 20 HOH HOH . 
E 3 HOH A 15 284 23 HOH HOH . 
E 3 HOH A 16 285 27 HOH HOH . 
E 3 HOH A 17 286 29 HOH HOH . 
E 3 HOH A 18 287 30 HOH HOH . 
E 3 HOH A 19 288 32 HOH HOH . 
E 3 HOH A 20 289 34 HOH HOH . 
E 3 HOH A 21 290 35 HOH HOH . 
E 3 HOH A 22 291 38 HOH HOH . 
E 3 HOH A 23 292 39 HOH HOH . 
E 3 HOH A 24 293 40 HOH HOH . 
E 3 HOH A 25 294 41 HOH HOH . 
E 3 HOH A 26 295 42 HOH HOH . 
E 3 HOH A 27 296 43 HOH HOH . 
E 3 HOH A 28 297 46 HOH HOH . 
E 3 HOH A 29 298 50 HOH HOH . 
E 3 HOH A 30 299 55 HOH HOH . 
E 3 HOH A 31 300 57 HOH HOH . 
E 3 HOH A 32 301 61 HOH HOH . 
E 3 HOH A 33 302 63 HOH HOH . 
E 3 HOH A 34 303 64 HOH HOH . 
E 3 HOH A 35 304 69 HOH HOH . 
E 3 HOH A 36 305 71 HOH HOH . 
E 3 HOH A 37 306 76 HOH HOH . 
E 3 HOH A 38 307 77 HOH HOH . 
E 3 HOH A 39 308 78 HOH HOH . 
E 3 HOH A 40 309 83 HOH HOH . 
E 3 HOH A 41 310 84 HOH HOH . 
E 3 HOH A 42 311 85 HOH HOH . 
E 3 HOH A 43 312 92 HOH HOH . 
E 3 HOH A 44 313 97 HOH HOH . 
E 3 HOH A 45 314 101 HOH HOH . 
E 3 HOH A 46 315 102 HOH HOH . 
E 3 HOH A 47 316 106 HOH HOH . 
E 3 HOH A 48 317 108 HOH HOH . 
E 3 HOH A 49 318 112 HOH HOH . 
E 3 HOH A 50 319 113 HOH HOH . 
E 3 HOH A 51 320 114 HOH HOH . 
E 3 HOH A 52 321 116 HOH HOH . 
E 3 HOH A 53 322 117 HOH HOH . 
E 3 HOH A 54 323 118 HOH HOH . 
E 3 HOH A 55 324 119 HOH HOH . 
E 3 HOH A 56 325 120 HOH HOH . 
E 3 HOH A 57 326 121 HOH HOH . 
E 3 HOH A 58 327 122 HOH HOH . 
E 3 HOH A 59 328 125 HOH HOH . 
E 3 HOH A 60 329 126 HOH HOH . 
E 3 HOH A 61 330 127 HOH HOH . 
E 3 HOH A 62 331 129 HOH HOH . 
E 3 HOH A 63 332 135 HOH HOH . 
E 3 HOH A 64 333 138 HOH HOH . 
E 3 HOH A 65 334 139 HOH HOH . 
E 3 HOH A 66 335 141 HOH HOH . 
E 3 HOH A 67 336 142 HOH HOH . 
E 3 HOH A 68 337 143 HOH HOH . 
E 3 HOH A 69 338 147 HOH HOH . 
E 3 HOH A 70 339 149 HOH HOH . 
E 3 HOH A 71 340 150 HOH HOH . 
E 3 HOH A 72 341 151 HOH HOH . 
E 3 HOH A 73 342 152 HOH HOH . 
E 3 HOH A 74 343 153 HOH HOH . 
E 3 HOH A 75 344 154 HOH HOH . 
E 3 HOH A 76 345 156 HOH HOH . 
F 3 HOH B 1 270 3 HOH HOH . 
F 3 HOH B 2 271 4 HOH HOH . 
F 3 HOH B 3 272 8 HOH HOH . 
F 3 HOH B 4 273 15 HOH HOH . 
F 3 HOH B 5 274 19 HOH HOH . 
F 3 HOH B 6 275 21 HOH HOH . 
F 3 HOH B 7 276 22 HOH HOH . 
F 3 HOH B 8 277 24 HOH HOH . 
F 3 HOH B 9 278 26 HOH HOH . 
F 3 HOH B 10 279 28 HOH HOH . 
F 3 HOH B 11 280 31 HOH HOH . 
F 3 HOH B 12 281 33 HOH HOH . 
F 3 HOH B 13 282 36 HOH HOH . 
F 3 HOH B 14 283 37 HOH HOH . 
F 3 HOH B 15 284 44 HOH HOH . 
F 3 HOH B 16 285 48 HOH HOH . 
F 3 HOH B 17 286 49 HOH HOH . 
F 3 HOH B 18 287 51 HOH HOH . 
F 3 HOH B 19 288 53 HOH HOH . 
F 3 HOH B 20 289 54 HOH HOH . 
F 3 HOH B 21 290 56 HOH HOH . 
F 3 HOH B 22 291 59 HOH HOH . 
F 3 HOH B 23 292 60 HOH HOH . 
F 3 HOH B 24 293 65 HOH HOH . 
F 3 HOH B 25 294 73 HOH HOH . 
F 3 HOH B 26 295 74 HOH HOH . 
F 3 HOH B 27 296 80 HOH HOH . 
F 3 HOH B 28 297 82 HOH HOH . 
F 3 HOH B 29 298 86 HOH HOH . 
F 3 HOH B 30 299 87 HOH HOH . 
F 3 HOH B 31 300 88 HOH HOH . 
F 3 HOH B 32 301 90 HOH HOH . 
F 3 HOH B 33 302 93 HOH HOH . 
F 3 HOH B 34 303 94 HOH HOH . 
F 3 HOH B 35 304 95 HOH HOH . 
F 3 HOH B 36 305 96 HOH HOH . 
F 3 HOH B 37 306 98 HOH HOH . 
F 3 HOH B 38 307 99 HOH HOH . 
F 3 HOH B 39 308 100 HOH HOH . 
F 3 HOH B 40 309 103 HOH HOH . 
F 3 HOH B 41 310 107 HOH HOH . 
F 3 HOH B 42 311 110 HOH HOH . 
F 3 HOH B 43 312 111 HOH HOH . 
F 3 HOH B 44 313 123 HOH HOH . 
F 3 HOH B 45 314 128 HOH HOH . 
F 3 HOH B 46 315 130 HOH HOH . 
F 3 HOH B 47 316 131 HOH HOH . 
F 3 HOH B 48 317 136 HOH HOH . 
F 3 HOH B 49 318 137 HOH HOH . 
F 3 HOH B 50 319 144 HOH HOH . 
F 3 HOH B 51 320 145 HOH HOH . 
F 3 HOH B 52 321 148 HOH HOH . 
F 3 HOH B 53 322 155 HOH HOH . 
F 3 HOH B 54 323 157 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C2 DHK . . . C 2 13.718 -1.426 42.661 1 21.85 ? C2 DHK 500 A 1 
HETATM 2 C C3 DHK . . . C 2 14.202 -1.658 43.906 1 23.24 ? C3 DHK 500 A 1 
HETATM 3 O O3 DHK . . . C 2 14.001 -2.843 44.48 1 20.68 ? O3 DHK 500 A 1 
HETATM 4 C C4 DHK . . . C 2 14.96 -0.562 44.621 1 21.11 ? C4 DHK 500 A 1 
HETATM 5 O O4 DHK . . . C 2 15.669 -1.091 45.727 1 21.02 ? O4 DHK 500 A 1 
HETATM 6 C C5 DHK . . . C 2 16.017 0.061 43.71 1 22.35 ? C5 DHK 500 A 1 
HETATM 7 C C1 DHK . . . C 2 14.601 -0.637 41.746 1 22.25 ? C1 DHK 500 A 1 
HETATM 8 C C6 DHK . . . C 2 15.288 0.543 42.469 1 21.72 ? C6 DHK 500 A 1 
HETATM 9 C C DHK . . . C 2 13.988 -0.309 40.408 1 22.59 ? C DHK 500 A 1 
HETATM 10 O O1 DHK . . . C 2 14.394 0.751 39.762 1 22.93 ? O1 DHK 500 A 1 
HETATM 11 O O2 DHK . . . C 2 13.12 -1.114 39.802 1 24 ? O2 DHK 500 A 1 
HETATM 12 O O5 DHK . . . C 2 16.728 1.149 44.381 1 24.89 ? O5 DHK 500 A 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           260 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           12 
#