data_3PHN # _model_server_result.job_id jm1swkmh84gr9Aj0lQUbIQ _model_server_result.datetime_utc '2025-04-03 20:31:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3phn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":105}' # _entry.id 3PHN # _exptl.entry_id 3PHN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 96.063 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SULFATE ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3PHN _cell.length_a 32.23 _cell.length_b 38.679 _cell.length_c 69.588 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3PHN _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 19 A CYS 19 1_555 A SG CYS 68 A CYS 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? disulf ? disulf2 A SG CYS 30 A CYS 30 1_555 A SG CYS 75 A CYS 75 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? disulf ? disulf3 A SG CYS 48 A CYS 48 1_555 A SG CYS 90 A CYS 90 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.01 ? disulf ? disulf4 A SG CYS 87 A CYS 87 1_555 A SG CYS 104 A CYS 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? covale ? covale1 A C PCA 1 A PCA 1 1_555 A N ASP 2 A ASP 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? # _chem_comp.formula 'O4 S -2' _chem_comp.formula_weight 96.063 _chem_comp.id SO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'SULFATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O1 SO4 doub 312 n n S O2 SO4 doub 313 n n S O3 SO4 sing 314 n n S O4 SO4 sing 315 n n # _atom_sites.entry_id 3PHN _atom_sites.fract_transf_matrix[1][1] 0.031027 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.025854 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01437 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 105 105 SO4 SO4 . C 2 SO4 A 1 106 106 SO4 SO4 . D 2 SO4 A 1 107 107 SO4 SO4 . E 3 ACT A 1 108 108 ACT ACT . F 4 HOH A 1 110 110 HOH HOH . F 4 HOH A 2 111 111 HOH HOH . F 4 HOH A 3 112 112 HOH HOH . F 4 HOH A 4 113 113 HOH HOH . F 4 HOH A 5 114 114 HOH HOH . F 4 HOH A 6 115 115 HOH HOH . F 4 HOH A 7 116 116 HOH HOH . F 4 HOH A 8 117 117 HOH HOH . F 4 HOH A 9 118 118 HOH HOH . F 4 HOH A 10 119 119 HOH HOH . F 4 HOH A 11 120 120 HOH HOH . F 4 HOH A 12 121 121 HOH HOH . F 4 HOH A 13 122 122 HOH HOH . F 4 HOH A 14 123 123 HOH HOH . F 4 HOH A 15 124 124 HOH HOH . F 4 HOH A 16 125 125 HOH HOH . F 4 HOH A 17 126 126 HOH HOH . F 4 HOH A 18 127 127 HOH HOH . F 4 HOH A 19 128 128 HOH HOH . F 4 HOH A 20 129 129 HOH HOH . F 4 HOH A 21 130 130 HOH HOH . F 4 HOH A 22 131 131 HOH HOH . F 4 HOH A 23 132 132 HOH HOH . F 4 HOH A 24 133 133 HOH HOH . F 4 HOH A 25 134 134 HOH HOH . F 4 HOH A 26 135 135 HOH HOH . F 4 HOH A 27 136 136 HOH HOH . F 4 HOH A 28 137 137 HOH HOH . F 4 HOH A 29 138 138 HOH HOH . F 4 HOH A 30 139 139 HOH HOH . F 4 HOH A 31 140 140 HOH HOH . F 4 HOH A 32 141 141 HOH HOH . F 4 HOH A 33 142 142 HOH HOH . F 4 HOH A 34 143 143 HOH HOH . F 4 HOH A 35 144 144 HOH HOH . F 4 HOH A 36 145 145 HOH HOH . F 4 HOH A 37 146 146 HOH HOH . F 4 HOH A 38 147 147 HOH HOH . F 4 HOH A 39 148 148 HOH HOH . F 4 HOH A 40 149 149 HOH HOH . F 4 HOH A 41 150 150 HOH HOH . F 4 HOH A 42 151 151 HOH HOH . F 4 HOH A 43 152 152 HOH HOH . F 4 HOH A 44 153 153 HOH HOH . F 4 HOH A 45 154 154 HOH HOH . F 4 HOH A 46 155 155 HOH HOH . F 4 HOH A 47 156 156 HOH HOH . F 4 HOH A 48 157 157 HOH HOH . F 4 HOH A 49 158 158 HOH HOH . F 4 HOH A 50 159 159 HOH HOH . F 4 HOH A 51 160 160 HOH HOH . F 4 HOH A 52 161 161 HOH HOH . F 4 HOH A 53 162 162 HOH HOH . F 4 HOH A 54 163 163 HOH HOH . F 4 HOH A 55 164 164 HOH HOH . F 4 HOH A 56 165 165 HOH HOH . F 4 HOH A 57 166 166 HOH HOH . F 4 HOH A 58 167 167 HOH HOH . F 4 HOH A 59 168 168 HOH HOH . F 4 HOH A 60 169 169 HOH HOH . F 4 HOH A 61 170 170 HOH HOH . F 4 HOH A 62 171 171 HOH HOH . F 4 HOH A 63 172 172 HOH HOH . F 4 HOH A 64 173 173 HOH HOH . F 4 HOH A 65 174 174 HOH HOH . F 4 HOH A 66 175 175 HOH HOH . F 4 HOH A 67 176 176 HOH HOH . F 4 HOH A 68 177 177 HOH HOH . F 4 HOH A 69 178 178 HOH HOH . F 4 HOH A 70 179 179 HOH HOH . F 4 HOH A 71 180 180 HOH HOH . F 4 HOH A 72 181 181 HOH HOH . F 4 HOH A 73 182 182 HOH HOH . F 4 HOH A 74 183 183 HOH HOH . F 4 HOH A 75 184 184 HOH HOH . F 4 HOH A 76 185 185 HOH HOH . F 4 HOH A 77 186 186 HOH HOH . F 4 HOH A 78 187 187 HOH HOH . F 4 HOH A 79 188 188 HOH HOH . F 4 HOH A 80 189 189 HOH HOH . F 4 HOH A 81 190 190 HOH HOH . F 4 HOH A 82 191 191 HOH HOH . F 4 HOH A 83 192 192 HOH HOH . F 4 HOH A 84 193 193 HOH HOH . F 4 HOH A 85 194 194 HOH HOH . F 4 HOH A 86 195 195 HOH HOH . F 4 HOH A 87 196 196 HOH HOH . F 4 HOH A 88 197 197 HOH HOH . F 4 HOH A 89 198 198 HOH HOH . F 4 HOH A 90 199 199 HOH HOH . F 4 HOH A 91 200 200 HOH HOH . F 4 HOH A 92 201 201 HOH HOH . F 4 HOH A 93 202 202 HOH HOH . F 4 HOH A 94 203 203 HOH HOH . F 4 HOH A 95 204 204 HOH HOH . F 4 HOH A 96 205 205 HOH HOH . F 4 HOH A 97 206 206 HOH HOH . F 4 HOH A 98 207 207 HOH HOH . F 4 HOH A 99 208 208 HOH HOH . F 4 HOH A 100 209 209 HOH HOH . F 4 HOH A 101 210 210 HOH HOH . F 4 HOH A 102 211 211 HOH HOH . F 4 HOH A 103 212 212 HOH HOH . F 4 HOH A 104 213 213 HOH HOH . F 4 HOH A 105 214 214 HOH HOH . F 4 HOH A 106 215 215 HOH HOH . F 4 HOH A 107 216 216 HOH HOH . F 4 HOH A 108 217 217 HOH HOH . F 4 HOH A 109 218 218 HOH HOH . F 4 HOH A 110 219 219 HOH HOH . F 4 HOH A 111 220 220 HOH HOH . F 4 HOH A 112 221 221 HOH HOH . F 4 HOH A 113 222 222 HOH HOH . F 4 HOH A 114 223 223 HOH HOH . F 4 HOH A 115 224 224 HOH HOH . F 4 HOH A 116 225 225 HOH HOH . F 4 HOH A 117 226 226 HOH HOH . F 4 HOH A 118 227 227 HOH HOH . F 4 HOH A 119 228 228 HOH HOH . F 4 HOH A 120 229 229 HOH HOH . F 4 HOH A 121 230 230 HOH HOH . F 4 HOH A 122 231 231 HOH HOH . F 4 HOH A 123 232 232 HOH HOH . F 4 HOH A 124 233 233 HOH HOH . F 4 HOH A 125 234 234 HOH HOH . F 4 HOH A 126 235 235 HOH HOH . F 4 HOH A 127 236 236 HOH HOH . F 4 HOH A 128 237 237 HOH HOH . F 4 HOH A 129 238 238 HOH HOH . F 4 HOH A 130 239 239 HOH HOH . F 4 HOH A 131 240 240 HOH HOH . F 4 HOH A 132 241 241 HOH HOH . F 4 HOH A 133 242 242 HOH HOH . F 4 HOH A 134 243 243 HOH HOH . F 4 HOH A 135 244 244 HOH HOH . F 4 HOH A 136 245 245 HOH HOH . F 4 HOH A 137 246 246 HOH HOH . F 4 HOH A 138 247 247 HOH HOH . F 4 HOH A 139 248 248 HOH HOH . F 4 HOH A 140 249 249 HOH HOH . F 4 HOH A 141 250 250 HOH HOH . F 4 HOH A 142 251 251 HOH HOH . F 4 HOH A 143 252 252 HOH HOH . F 4 HOH A 144 253 253 HOH HOH . F 4 HOH A 145 254 254 HOH HOH . F 4 HOH A 146 255 255 HOH HOH . F 4 HOH A 147 256 256 HOH HOH . F 4 HOH A 148 257 257 HOH HOH . F 4 HOH A 149 258 258 HOH HOH . F 4 HOH A 150 277 277 HOH HOH . F 4 HOH A 151 278 278 HOH HOH . F 4 HOH A 152 279 279 HOH HOH . F 4 HOH A 153 281 281 HOH HOH . F 4 HOH A 154 283 283 HOH HOH . F 4 HOH A 155 284 284 HOH HOH . F 4 HOH A 156 285 285 HOH HOH . F 4 HOH A 157 286 286 HOH HOH . F 4 HOH A 158 287 287 HOH HOH . F 4 HOH A 159 288 288 HOH HOH . F 4 HOH A 160 289 289 HOH HOH . F 4 HOH A 161 291 291 HOH HOH . F 4 HOH A 162 293 293 HOH HOH . F 4 HOH A 163 299 299 HOH HOH . F 4 HOH A 164 300 300 HOH HOH . F 4 HOH A 165 301 301 HOH HOH . F 4 HOH A 166 302 302 HOH HOH . F 4 HOH A 167 303 303 HOH HOH . F 4 HOH A 168 304 304 HOH HOH . F 4 HOH A 169 305 305 HOH HOH . F 4 HOH A 170 306 306 HOH HOH . F 4 HOH A 171 308 308 HOH HOH . F 4 HOH A 172 309 309 HOH HOH . F 4 HOH A 173 314 314 HOH HOH . F 4 HOH A 174 315 315 HOH HOH . F 4 HOH A 175 316 316 HOH HOH . F 4 HOH A 176 317 317 HOH HOH . F 4 HOH A 177 318 318 HOH HOH . F 4 HOH A 178 319 319 HOH HOH . F 4 HOH A 179 321 321 HOH HOH . F 4 HOH A 180 322 322 HOH HOH . F 4 HOH A 181 323 323 HOH HOH . F 4 HOH A 182 324 324 HOH HOH . F 4 HOH A 183 326 326 HOH HOH . F 4 HOH A 184 327 327 HOH HOH . F 4 HOH A 185 328 328 HOH HOH . F 4 HOH A 186 329 329 HOH HOH . F 4 HOH A 187 330 330 HOH HOH . F 4 HOH A 188 334 334 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S SO4 . . . B 2 -14.659 -3.693 3.395 1 9.54 ? S SO4 105 A 1 HETATM 2 O O1 SO4 . . . B 2 -14.4 -4.97 2.657 1 12.68 ? O1 SO4 105 A 1 HETATM 3 O O2 SO4 . . . B 2 -15.584 -2.79 2.701 1 15.32 ? O2 SO4 105 A 1 HETATM 4 O O3 SO4 . . . B 2 -15.173 -4.022 4.716 1 12.4 ? O3 SO4 105 A 1 HETATM 5 O O4 SO4 . . . B 2 -13.373 -3.045 3.681 1 12.14 ? O4 SO4 105 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 325 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 5 #