data_3PI3
#
_model_server_result.job_id            ACWsB-cmqsyUMmKSgsxkeQ 
_model_server_result.datetime_utc      '2024-11-22 17:05:05' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3pi3 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":501}' 
#
_entry.id    3PI3 
#
_exptl.entry_id    3PI3 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              31.999 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'OXYGEN MOLECULE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3PI3 
_cell.length_a            73.973 
_cell.length_b            73.973 
_cell.length_c            153.194 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3PI3 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        94 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 42 21 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA tetrameric 4 software_defined_assembly 2 
PISA octameric 8 software_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E,F,G,H 1 1 
A,B,C,D,E,F,G,H 2 1,2 
A,B,C,D,E,F,G,H 3 1,3,4,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 8_555 -y,-x,-z 0 -1 0 -1 0 0 0 0 -1 0 0 0 
3 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 
4 'crystal symmetry operation' 7_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 F N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C ACE 1 A ACE 0 1_555 A N THR 2 A THR 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.345 ? 
covale ? covale2 B C ACE 1 B ACE 0 1_555 B N THR 2 B THR 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? 
metalc ? metalc1 A NE2 HIS 98 A HIS 97 1_555 C FE HEM . A HEM 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.181 ? 
metalc ? metalc2 C FE HEM . A HEM 500 1_555 D O2 OXY . A OXY 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? 
metalc ? metalc3 B NE2 HIS 98 B HIS 97 1_555 E FE HEM . B HEM 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.148 ? 
metalc ? metalc4 E FE HEM . B HEM 500 1_555 F O2 OXY . B OXY 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
#
_chem_comp.formula           O2 
_chem_comp.formula_weight    31.999 
_chem_comp.id                OXY 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'OXYGEN MOLECULE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_chem_comp_bond.atom_id_1             O1 
_chem_comp_bond.atom_id_2             O2 
_chem_comp_bond.comp_id               OXY 
_chem_comp_bond.value_order           doub 
_chem_comp_bond.pdbx_ordinal          325 
_chem_comp_bond.pdbx_stereo_config    n 
_chem_comp_bond.pdbx_aromatic_flag    n 
#
_atom_sites.entry_id                     3PI3 
_atom_sites.fract_transf_matrix[1][1]    0.013518 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013518 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006528 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 HEM A 1 500 500 HEM HEM . 
D 3 OXY A 1 501 501 OXY OXY . 
E 2 HEM B 1 500 500 HEM HEM . 
F 3 OXY B 1 501 501 OXY OXY . 
G 4 HOH A 1 153 153 HOH HOH . 
G 4 HOH A 2 154 154 HOH HOH . 
G 4 HOH A 3 155 155 HOH HOH . 
G 4 HOH A 4 156 156 HOH HOH . 
G 4 HOH A 5 157 157 HOH HOH . 
G 4 HOH A 6 158 1 HOH HOH . 
G 4 HOH A 7 159 159 HOH HOH . 
G 4 HOH A 8 160 2 HOH HOH . 
G 4 HOH A 9 161 161 HOH HOH . 
G 4 HOH A 10 162 162 HOH HOH . 
G 4 HOH A 11 163 5 HOH HOH . 
G 4 HOH A 12 164 164 HOH HOH . 
G 4 HOH A 13 165 6 HOH HOH . 
G 4 HOH A 14 166 166 HOH HOH . 
G 4 HOH A 15 167 7 HOH HOH . 
G 4 HOH A 16 168 9 HOH HOH . 
G 4 HOH A 17 169 10 HOH HOH . 
G 4 HOH A 18 170 170 HOH HOH . 
G 4 HOH A 19 171 11 HOH HOH . 
G 4 HOH A 20 172 172 HOH HOH . 
G 4 HOH A 21 173 173 HOH HOH . 
G 4 HOH A 22 174 174 HOH HOH . 
G 4 HOH A 23 175 14 HOH HOH . 
G 4 HOH A 24 176 18 HOH HOH . 
G 4 HOH A 25 177 177 HOH HOH . 
G 4 HOH A 26 178 178 HOH HOH . 
G 4 HOH A 27 179 19 HOH HOH . 
G 4 HOH A 28 180 180 HOH HOH . 
G 4 HOH A 29 181 181 HOH HOH . 
G 4 HOH A 30 182 21 HOH HOH . 
G 4 HOH A 31 183 22 HOH HOH . 
G 4 HOH A 32 184 184 HOH HOH . 
G 4 HOH A 33 185 23 HOH HOH . 
G 4 HOH A 34 186 186 HOH HOH . 
G 4 HOH A 35 187 25 HOH HOH . 
G 4 HOH A 36 188 27 HOH HOH . 
G 4 HOH A 37 189 28 HOH HOH . 
G 4 HOH A 38 190 29 HOH HOH . 
G 4 HOH A 39 191 191 HOH HOH . 
G 4 HOH A 40 192 30 HOH HOH . 
G 4 HOH A 41 193 193 HOH HOH . 
G 4 HOH A 42 194 194 HOH HOH . 
G 4 HOH A 43 195 195 HOH HOH . 
G 4 HOH A 44 196 32 HOH HOH . 
G 4 HOH A 45 197 197 HOH HOH . 
G 4 HOH A 46 198 198 HOH HOH . 
G 4 HOH A 47 199 33 HOH HOH . 
G 4 HOH A 48 200 34 HOH HOH . 
G 4 HOH A 49 201 201 HOH HOH . 
G 4 HOH A 50 202 202 HOH HOH . 
G 4 HOH A 51 203 203 HOH HOH . 
G 4 HOH A 52 204 36 HOH HOH . 
G 4 HOH A 53 205 205 HOH HOH . 
G 4 HOH A 54 206 37 HOH HOH . 
G 4 HOH A 55 207 40 HOH HOH . 
G 4 HOH A 56 208 42 HOH HOH . 
G 4 HOH A 57 209 43 HOH HOH . 
G 4 HOH A 58 210 44 HOH HOH . 
G 4 HOH A 59 211 45 HOH HOH . 
G 4 HOH A 60 212 212 HOH HOH . 
G 4 HOH A 61 213 213 HOH HOH . 
G 4 HOH A 62 214 214 HOH HOH . 
G 4 HOH A 63 215 215 HOH HOH . 
G 4 HOH A 64 216 46 HOH HOH . 
G 4 HOH A 65 217 217 HOH HOH . 
G 4 HOH A 66 218 50 HOH HOH . 
G 4 HOH A 67 219 51 HOH HOH . 
G 4 HOH A 68 220 220 HOH HOH . 
G 4 HOH A 69 221 52 HOH HOH . 
G 4 HOH A 70 222 222 HOH HOH . 
G 4 HOH A 71 223 223 HOH HOH . 
G 4 HOH A 72 224 224 HOH HOH . 
G 4 HOH A 73 225 225 HOH HOH . 
G 4 HOH A 74 226 53 HOH HOH . 
G 4 HOH A 75 227 227 HOH HOH . 
G 4 HOH A 76 228 228 HOH HOH . 
G 4 HOH A 77 229 229 HOH HOH . 
G 4 HOH A 78 230 230 HOH HOH . 
G 4 HOH A 79 231 231 HOH HOH . 
G 4 HOH A 80 232 57 HOH HOH . 
G 4 HOH A 81 233 233 HOH HOH . 
G 4 HOH A 82 234 63 HOH HOH . 
G 4 HOH A 83 235 235 HOH HOH . 
G 4 HOH A 84 236 236 HOH HOH . 
G 4 HOH A 85 237 65 HOH HOH . 
G 4 HOH A 86 238 238 HOH HOH . 
G 4 HOH A 87 239 69 HOH HOH . 
G 4 HOH A 88 240 70 HOH HOH . 
G 4 HOH A 89 241 71 HOH HOH . 
G 4 HOH A 90 242 74 HOH HOH . 
G 4 HOH A 91 243 75 HOH HOH . 
G 4 HOH A 92 244 76 HOH HOH . 
G 4 HOH A 93 245 82 HOH HOH . 
G 4 HOH A 94 246 84 HOH HOH . 
G 4 HOH A 95 247 86 HOH HOH . 
G 4 HOH A 96 248 88 HOH HOH . 
G 4 HOH A 97 249 90 HOH HOH . 
G 4 HOH A 98 250 91 HOH HOH . 
G 4 HOH A 99 251 94 HOH HOH . 
G 4 HOH A 100 252 96 HOH HOH . 
G 4 HOH A 101 253 97 HOH HOH . 
G 4 HOH A 102 254 99 HOH HOH . 
G 4 HOH A 103 255 100 HOH HOH . 
G 4 HOH A 104 256 110 HOH HOH . 
G 4 HOH A 105 257 114 HOH HOH . 
G 4 HOH A 106 258 116 HOH HOH . 
G 4 HOH A 107 259 117 HOH HOH . 
G 4 HOH A 108 260 118 HOH HOH . 
G 4 HOH A 109 261 121 HOH HOH . 
G 4 HOH A 110 262 124 HOH HOH . 
G 4 HOH A 111 263 125 HOH HOH . 
G 4 HOH A 112 264 126 HOH HOH . 
G 4 HOH A 113 265 127 HOH HOH . 
G 4 HOH A 114 266 128 HOH HOH . 
G 4 HOH A 115 267 129 HOH HOH . 
G 4 HOH A 116 268 130 HOH HOH . 
G 4 HOH A 117 269 133 HOH HOH . 
G 4 HOH A 118 270 134 HOH HOH . 
G 4 HOH A 119 271 142 HOH HOH . 
G 4 HOH A 120 272 143 HOH HOH . 
G 4 HOH A 121 273 145 HOH HOH . 
G 4 HOH A 122 274 148 HOH HOH . 
G 4 HOH A 123 275 149 HOH HOH . 
G 4 HOH A 124 276 150 HOH HOH . 
G 4 HOH A 125 277 151 HOH HOH . 
G 4 HOH A 126 278 98 HOH HOH . 
G 4 HOH A 127 279 115 HOH HOH . 
H 4 HOH B 1 153 3 HOH HOH . 
H 4 HOH B 2 154 4 HOH HOH . 
H 4 HOH B 3 155 8 HOH HOH . 
H 4 HOH B 4 156 12 HOH HOH . 
H 4 HOH B 5 157 13 HOH HOH . 
H 4 HOH B 6 158 158 HOH HOH . 
H 4 HOH B 7 159 15 HOH HOH . 
H 4 HOH B 8 160 160 HOH HOH . 
H 4 HOH B 9 161 16 HOH HOH . 
H 4 HOH B 10 162 17 HOH HOH . 
H 4 HOH B 11 163 163 HOH HOH . 
H 4 HOH B 12 164 20 HOH HOH . 
H 4 HOH B 13 165 165 HOH HOH . 
H 4 HOH B 14 166 24 HOH HOH . 
H 4 HOH B 15 167 167 HOH HOH . 
H 4 HOH B 16 168 168 HOH HOH . 
H 4 HOH B 17 169 169 HOH HOH . 
H 4 HOH B 18 170 26 HOH HOH . 
H 4 HOH B 19 171 171 HOH HOH . 
H 4 HOH B 20 172 31 HOH HOH . 
H 4 HOH B 21 173 35 HOH HOH . 
H 4 HOH B 22 174 38 HOH HOH . 
H 4 HOH B 23 175 175 HOH HOH . 
H 4 HOH B 24 176 176 HOH HOH . 
H 4 HOH B 25 177 39 HOH HOH . 
H 4 HOH B 26 178 41 HOH HOH . 
H 4 HOH B 27 179 179 HOH HOH . 
H 4 HOH B 28 180 47 HOH HOH . 
H 4 HOH B 29 181 48 HOH HOH . 
H 4 HOH B 30 182 182 HOH HOH . 
H 4 HOH B 31 183 183 HOH HOH . 
H 4 HOH B 32 184 49 HOH HOH . 
H 4 HOH B 33 185 185 HOH HOH . 
H 4 HOH B 34 186 54 HOH HOH . 
H 4 HOH B 35 187 187 HOH HOH . 
H 4 HOH B 36 188 188 HOH HOH . 
H 4 HOH B 37 189 189 HOH HOH . 
H 4 HOH B 38 190 190 HOH HOH . 
H 4 HOH B 39 191 55 HOH HOH . 
H 4 HOH B 40 192 192 HOH HOH . 
H 4 HOH B 41 193 56 HOH HOH . 
H 4 HOH B 42 194 58 HOH HOH . 
H 4 HOH B 43 195 59 HOH HOH . 
H 4 HOH B 44 196 196 HOH HOH . 
H 4 HOH B 45 197 60 HOH HOH . 
H 4 HOH B 46 198 61 HOH HOH . 
H 4 HOH B 47 199 199 HOH HOH . 
H 4 HOH B 48 200 200 HOH HOH . 
H 4 HOH B 49 201 62 HOH HOH . 
H 4 HOH B 50 202 64 HOH HOH . 
H 4 HOH B 51 203 66 HOH HOH . 
H 4 HOH B 52 204 204 HOH HOH . 
H 4 HOH B 53 205 67 HOH HOH . 
H 4 HOH B 54 206 206 HOH HOH . 
H 4 HOH B 55 207 207 HOH HOH . 
H 4 HOH B 56 208 208 HOH HOH . 
H 4 HOH B 57 209 209 HOH HOH . 
H 4 HOH B 58 210 210 HOH HOH . 
H 4 HOH B 59 211 211 HOH HOH . 
H 4 HOH B 60 212 68 HOH HOH . 
H 4 HOH B 61 213 72 HOH HOH . 
H 4 HOH B 62 214 73 HOH HOH . 
H 4 HOH B 63 215 77 HOH HOH . 
H 4 HOH B 64 216 216 HOH HOH . 
H 4 HOH B 65 217 78 HOH HOH . 
H 4 HOH B 66 218 218 HOH HOH . 
H 4 HOH B 67 219 219 HOH HOH . 
H 4 HOH B 68 220 79 HOH HOH . 
H 4 HOH B 69 221 80 HOH HOH . 
H 4 HOH B 70 222 81 HOH HOH . 
H 4 HOH B 71 223 83 HOH HOH . 
H 4 HOH B 72 224 85 HOH HOH . 
H 4 HOH B 73 225 87 HOH HOH . 
H 4 HOH B 74 226 226 HOH HOH . 
H 4 HOH B 75 227 89 HOH HOH . 
H 4 HOH B 76 228 92 HOH HOH . 
H 4 HOH B 77 229 93 HOH HOH . 
H 4 HOH B 78 230 95 HOH HOH . 
H 4 HOH B 79 232 232 HOH HOH . 
H 4 HOH B 80 233 101 HOH HOH . 
H 4 HOH B 81 234 234 HOH HOH . 
H 4 HOH B 82 235 102 HOH HOH . 
H 4 HOH B 83 236 103 HOH HOH . 
H 4 HOH B 84 237 237 HOH HOH . 
H 4 HOH B 85 238 104 HOH HOH . 
H 4 HOH B 86 239 239 HOH HOH . 
H 4 HOH B 87 240 105 HOH HOH . 
H 4 HOH B 88 241 106 HOH HOH . 
H 4 HOH B 89 242 107 HOH HOH . 
H 4 HOH B 90 243 108 HOH HOH . 
H 4 HOH B 91 244 109 HOH HOH . 
H 4 HOH B 92 245 111 HOH HOH . 
H 4 HOH B 93 246 112 HOH HOH . 
H 4 HOH B 94 247 113 HOH HOH . 
H 4 HOH B 95 249 119 HOH HOH . 
H 4 HOH B 96 250 120 HOH HOH . 
H 4 HOH B 97 251 122 HOH HOH . 
H 4 HOH B 98 252 123 HOH HOH . 
H 4 HOH B 99 253 131 HOH HOH . 
H 4 HOH B 100 254 135 HOH HOH . 
H 4 HOH B 101 255 136 HOH HOH . 
H 4 HOH B 102 256 137 HOH HOH . 
H 4 HOH B 103 257 138 HOH HOH . 
H 4 HOH B 104 258 139 HOH HOH . 
H 4 HOH B 105 259 140 HOH HOH . 
H 4 HOH B 106 260 141 HOH HOH . 
H 4 HOH B 107 261 144 HOH HOH . 
H 4 HOH B 108 262 146 HOH HOH . 
H 4 HOH B 109 263 147 HOH HOH . 
H 4 HOH B 110 264 152 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O1 OXY . . . D 3 -5.461 20.712 32.356 1 43.72 ? O1 OXY 501 A 1 
HETATM 2 O O2 OXY . . . D 3 -6.163 20.884 31.373 1 32.59 ? O2 OXY 501 A 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           295 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           2 
#