data_3PII # _model_server_result.job_id d7CiMkSL5SE-NCi2yiXE4Q _model_server_result.datetime_utc '2025-02-27 01:51:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3pii # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":600}' # _entry.id 3PII # _exptl.entry_id 3PII _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 87.12 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description BUTYRAMIDE _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3PII _cell.length_a 145.65 _cell.length_b 145.65 _cell.length_c 135.518 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3PII _symmetry.cell_setting ? _symmetry.Int_Tables_number 173 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 63' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 G N N ? 3 K N N ? 3 O N N ? 3 S N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 38 A CYS 38 1_555 E ZN ZN . A ZN 340 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.997 ? metalc ? metalc2 A NE2 HIS 61 A HIS 61 1_555 E ZN ZN . A ZN 340 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? metalc ? metalc3 A OE2 GLU 62 A GLU 62 1_555 E ZN ZN . A ZN 340 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.535 ? metalc ? metalc4 A SG CYS 92 A CYS 92 1_555 F ZN ZN . A ZN 341 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.191 ? metalc ? metalc5 A SG CYS 95 A CYS 95 1_555 F ZN ZN . A ZN 341 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.292 ? metalc ? metalc6 A SG CYS 98 A CYS 98 1_555 F ZN ZN . A ZN 341 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.224 ? metalc ? metalc7 A SG CYS 106 A CYS 106 1_555 F ZN ZN . A ZN 341 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.268 ? metalc ? metalc8 A SG CYS 148 A CYS 148 1_555 E ZN ZN . A ZN 340 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.47 ? metalc ? metalc9 B SG CYS 38 C CYS 38 1_555 I ZN ZN . C ZN 340 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? metalc ? metalc10 B NE2 HIS 61 C HIS 61 1_555 I ZN ZN . C ZN 340 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? metalc ? metalc11 B SG CYS 92 C CYS 92 1_555 J ZN ZN . C ZN 341 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.205 ? metalc ? metalc12 B SG CYS 95 C CYS 95 1_555 J ZN ZN . C ZN 341 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.243 ? metalc ? metalc13 B SG CYS 98 C CYS 98 1_555 J ZN ZN . C ZN 341 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.286 ? metalc ? metalc14 B SG CYS 106 C CYS 106 1_555 J ZN ZN . C ZN 341 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.223 ? metalc ? metalc15 B SG CYS 148 C CYS 148 1_555 I ZN ZN . C ZN 340 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.084 ? metalc ? metalc16 C SG CYS 38 B CYS 38 1_555 M ZN ZN . B ZN 340 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.379 ? metalc ? metalc17 C NE2 HIS 61 B HIS 61 1_555 M ZN ZN . B ZN 340 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.18 ? metalc ? metalc18 C SG CYS 92 B CYS 92 1_555 N ZN ZN . B ZN 341 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.209 ? metalc ? metalc19 C SG CYS 95 B CYS 95 1_555 N ZN ZN . B ZN 341 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.362 ? metalc ? metalc20 C SG CYS 98 B CYS 98 1_555 N ZN ZN . B ZN 341 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.333 ? metalc ? metalc21 C SG CYS 106 B CYS 106 1_555 N ZN ZN . B ZN 341 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.133 ? metalc ? metalc22 C SG CYS 148 B CYS 148 1_555 M ZN ZN . B ZN 340 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.377 ? metalc ? metalc23 D SG CYS 38 D CYS 38 1_555 Q ZN ZN . D ZN 340 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.187 ? metalc ? metalc24 D NE2 HIS 61 D HIS 61 1_555 Q ZN ZN . D ZN 340 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.187 ? metalc ? metalc25 D SG CYS 92 D CYS 92 1_555 R ZN ZN . D ZN 341 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.282 ? metalc ? metalc26 D SG CYS 95 D CYS 95 1_555 R ZN ZN . D ZN 341 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.351 ? metalc ? metalc27 D SG CYS 98 D CYS 98 1_555 R ZN ZN . D ZN 341 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.369 ? metalc ? metalc28 D SG CYS 106 D CYS 106 1_555 R ZN ZN . D ZN 341 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.135 ? metalc ? metalc29 D SG CYS 148 D CYS 148 1_555 Q ZN ZN . D ZN 340 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.355 ? # _chem_comp.formula 'C4 H9 N O' _chem_comp.formula_weight 87.12 _chem_comp.id BMD _chem_comp.mon_nstd_flag . _chem_comp.name BUTYRAMIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C3 C2 BMD sing 70 n n C3 H33 BMD sing 71 n n C3 H32 BMD sing 72 n n C3 H31 BMD sing 73 n n C2 C1 BMD sing 74 n n C2 H22 BMD sing 75 n n C2 H21 BMD sing 76 n n C1 CA BMD sing 77 n n C1 H12 BMD sing 78 n n C1 H11 BMD sing 79 n n CA OA BMD doub 80 n n CA NA BMD sing 81 n n NA HN1 BMD sing 82 n n NA HN2 BMD sing 83 n n # _atom_sites.entry_id 3PII _atom_sites.fract_transf_matrix[1][1] 0.006866 _atom_sites.fract_transf_matrix[1][2] 0.003964 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007928 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007379 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 ZN A 1 340 3 ZN ZN . F 2 ZN A 1 341 5 ZN ZN . G 3 BMD A 1 600 600 BMD BMD . H 4 SO4 A 1 342 100 SO4 SO4 . I 2 ZN C 1 340 4 ZN ZN . J 2 ZN C 1 341 6 ZN ZN . K 3 BMD C 1 700 700 BMD BMD . L 4 SO4 C 1 342 300 SO4 SO4 . M 2 ZN B 1 340 2 ZN ZN . N 2 ZN B 1 341 7 ZN ZN . O 3 BMD B 1 500 500 BMD BMD . P 4 SO4 B 1 342 200 SO4 SO4 . Q 2 ZN D 1 340 1 ZN ZN . R 2 ZN D 1 341 8 ZN ZN . S 3 BMD D 1 400 400 BMD BMD . T 4 SO4 D 1 342 400 SO4 SO4 . U 5 HOH A 1 343 1 HOH HOH . V 5 HOH C 1 343 2 HOH HOH . W 5 HOH B 1 343 3 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C3 BMD . . . G 3 -21.861 -50.124 -19.702 1 25.23 ? C3 BMD 600 A 1 HETATM 2 C C2 BMD . . . G 3 -20.886 -51.274 -19.545 1 27.57 ? C2 BMD 600 A 1 HETATM 3 C C1 BMD . . . G 3 -19.893 -50.976 -18.414 1 28.82 ? C1 BMD 600 A 1 HETATM 4 C CA BMD . . . G 3 -18.612 -51.809 -18.46 1 28.87 ? CA BMD 600 A 1 HETATM 5 O OA BMD . . . G 3 -18.263 -52.416 -19.463 1 28.52 ? OA BMD 600 A 1 HETATM 6 N NA BMD . . . G 3 -17.878 -51.842 -17.342 1 29.09 ? NA BMD 600 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 254 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 6 #