data_3PIY # _model_server_result.job_id xVWZZ0rzEpw2DWlOxYWbrA _model_server_result.datetime_utc '2024-11-15 08:50:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3piy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1}' # _entry.id 3PIY # _exptl.entry_id 3PIY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 470.454 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 6-({5-fluoro-2-[(3,4,5-trimethoxyphenyl)amino]pyrimidin-4-yl}amino)-2,2-dimethyl-2H-pyrido[3,2-b][1,4]oxazin-3(4H)-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3PIY _cell.length_a 70.905 _cell.length_b 105.013 _cell.length_c 38.052 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3PIY _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C22 H23 F N6 O5' _chem_comp.formula_weight 470.454 _chem_comp.id 585 _chem_comp.mon_nstd_flag . _chem_comp.name 6-({5-fluoro-2-[(3,4,5-trimethoxyphenyl)amino]pyrimidin-4-yl}amino)-2,2-dimethyl-2H-pyrido[3,2-b][1,4]oxazin-3(4H)-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C3 585 sing 1 n n N1 C5 585 sing 2 n n N2 C4 585 doub 3 n y N2 C7 585 sing 4 n y C3 N6 585 doub 5 n y C3 C13 585 sing 6 n y C4 N10 585 sing 7 n n C4 C11 585 sing 8 n y C5 C9 585 sing 9 n n C5 O23 585 doub 10 n n N6 C14 585 sing 11 n y C7 N17 585 doub 12 n y C7 N21 585 sing 13 n n O8 C9 585 sing 14 n n O8 C13 585 sing 15 n n C9 C30 585 sing 16 n n C9 C31 585 sing 17 n n N10 C14 585 sing 18 n n C11 C22 585 doub 19 n y C11 F25 585 sing 20 n n C12 C15 585 doub 21 n y C12 C16 585 sing 22 n y C12 O27 585 sing 23 n n C13 C24 585 doub 24 n y C14 C26 585 doub 25 n y C15 C19 585 sing 26 n y C15 O29 585 sing 27 n n C16 C20 585 doub 28 n y C16 O28 585 sing 29 n n N17 C22 585 sing 30 n y C18 C19 585 doub 31 n y C18 C20 585 sing 32 n y C18 N21 585 sing 33 n n C24 C26 585 sing 34 n y O27 C32 585 sing 35 n n O28 C33 585 sing 36 n n O29 C34 585 sing 37 n n N1 HN1 585 sing 38 n n N10 HN10 585 sing 39 n n C19 H19 585 sing 40 n n C20 H20 585 sing 41 n n N21 HN21 585 sing 42 n n C22 H22 585 sing 43 n n C24 H24 585 sing 44 n n C26 H26 585 sing 45 n n C30 H30 585 sing 46 n n C30 H30A 585 sing 47 n n C30 H30B 585 sing 48 n n C31 H31 585 sing 49 n n C31 H31A 585 sing 50 n n C31 H31B 585 sing 51 n n C32 H32 585 sing 52 n n C32 H32A 585 sing 53 n n C32 H32B 585 sing 54 n n C33 H33 585 sing 55 n n C33 H33A 585 sing 56 n n C33 H33B 585 sing 57 n n C34 H34 585 sing 58 n n C34 H34A 585 sing 59 n n C34 H34B 585 sing 60 n n # _atom_sites.entry_id 3PIY _atom_sites.fract_transf_matrix[1][1] 0.014103 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009523 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.02628 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 585 A 1 1 1 585 585 . C 3 HOH A 1 1002 1002 HOH HOH . C 3 HOH A 2 1003 1003 HOH HOH . C 3 HOH A 3 1007 1007 HOH HOH . C 3 HOH A 4 1009 1009 HOH HOH . C 3 HOH A 5 1011 1011 HOH HOH . C 3 HOH A 6 1013 1013 HOH HOH . C 3 HOH A 7 1014 1014 HOH HOH . C 3 HOH A 8 1016 1016 HOH HOH . C 3 HOH A 9 1018 1018 HOH HOH . C 3 HOH A 10 1020 1020 HOH HOH . C 3 HOH A 11 1021 1021 HOH HOH . C 3 HOH A 12 1023 1023 HOH HOH . C 3 HOH A 13 1032 1032 HOH HOH . C 3 HOH A 14 1034 1034 HOH HOH . C 3 HOH A 15 1035 1035 HOH HOH . C 3 HOH A 16 1037 1037 HOH HOH . C 3 HOH A 17 1040 1040 HOH HOH . C 3 HOH A 18 1044 1044 HOH HOH . C 3 HOH A 19 1048 1048 HOH HOH . C 3 HOH A 20 1065 1065 HOH HOH . C 3 HOH A 21 3001 3001 HOH HOH . C 3 HOH A 22 3003 3003 HOH HOH . C 3 HOH A 23 3006 3006 HOH HOH . C 3 HOH A 24 3010 3010 HOH HOH . C 3 HOH A 25 3011 3011 HOH HOH . C 3 HOH A 26 3019 3019 HOH HOH . C 3 HOH A 27 3020 3020 HOH HOH . C 3 HOH A 28 3024 3024 HOH HOH . C 3 HOH A 29 3026 3026 HOH HOH . C 3 HOH A 30 3030 3030 HOH HOH . C 3 HOH A 31 3031 3031 HOH HOH . C 3 HOH A 32 3032 3032 HOH HOH . C 3 HOH A 33 3034 3034 HOH HOH . C 3 HOH A 34 3048 3048 HOH HOH . C 3 HOH A 35 3057 3057 HOH HOH . C 3 HOH A 36 3063 3063 HOH HOH . C 3 HOH A 37 3084 3084 HOH HOH . C 3 HOH A 38 3098 3098 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 585 . . . B 2 -14.219 7.638 -13.435 1 25.96 ? N1 585 1 A 1 HETATM 2 N N2 585 . . . B 2 -18.298 5.838 -18.129 1 17.97 ? N2 585 1 A 1 HETATM 3 C C3 585 . . . B 2 -14.743 7.063 -14.61 1 25.21 ? C3 585 1 A 1 HETATM 4 C C4 585 . . . B 2 -18.707 5.688 -16.88 1 17.11 ? C4 585 1 A 1 HETATM 5 C C5 585 . . . B 2 -12.983 8.234 -13.495 1 27.44 ? C5 585 1 A 1 HETATM 6 N N6 585 . . . B 2 -16.025 6.73 -14.695 1 23.57 ? N6 585 1 A 1 HETATM 7 C C7 585 . . . B 2 -19.134 5.663 -19.148 1 17.91 ? C7 585 1 A 1 HETATM 8 O O8 585 . . . B 2 -12.57 7.158 -15.667 1 26.24 ? O8 585 1 A 1 HETATM 9 C C9 585 . . . B 2 -12.242 8.272 -14.823 1 26.87 ? C9 585 1 A 1 HETATM 10 N N10 585 . . . B 2 -17.879 5.862 -15.785 1 18.79 ? N10 585 1 A 1 HETATM 11 C C11 585 . . . B 2 -20.035 5.313 -16.64 1 16.35 ? C11 585 1 A 1 HETATM 12 C C12 585 . . . B 2 -15.039 7.407 -21.775 1 26.92 ? C12 585 1 A 1 HETATM 13 C C13 585 . . . B 2 -13.891 6.841 -15.706 1 24.71 ? C13 585 1 A 1 HETATM 14 C C14 585 . . . B 2 -16.537 6.193 -15.807 1 21.14 ? C14 585 1 A 1 HETATM 15 C C15 585 . . . B 2 -15.762 6.502 -22.581 1 26.26 ? C15 585 1 A 1 HETATM 16 C C16 585 . . . B 2 -15.54 7.794 -20.535 1 26.63 ? C16 585 1 A 1 HETATM 17 N N17 585 . . . B 2 -20.394 5.317 -18.964 1 14.69 ? N17 585 1 A 1 HETATM 18 C C18 585 . . . B 2 -17.47 6.386 -20.858 1 22.71 ? C18 585 1 A 1 HETATM 19 C C19 585 . . . B 2 -16.975 5.999 -22.097 1 24.87 ? C19 585 1 A 1 HETATM 20 C C20 585 . . . B 2 -16.757 7.291 -20.082 1 24.19 ? C20 585 1 A 1 HETATM 21 N N21 585 . . . B 2 -18.703 5.851 -20.455 1 21.28 ? N21 585 1 A 1 HETATM 22 C C22 585 . . . B 2 -20.869 5.128 -17.734 1 14.86 ? C22 585 1 A 1 HETATM 23 O O23 585 . . . B 2 -12.506 8.762 -12.499 1 29.38 ? O23 585 1 A 1 HETATM 24 C C24 585 . . . B 2 -14.407 6.261 -16.865 1 23.15 ? C24 585 1 A 1 HETATM 25 F F25 585 . . . B 2 -20.459 5.144 -15.353 1 13.97 ? F25 585 1 A 1 HETATM 26 C C26 585 . . . B 2 -15.749 5.932 -16.92 1 21.03 ? C26 585 1 A 1 HETATM 27 O O27 585 . . . B 2 -13.849 7.94 -22.179 1 27.62 ? O27 585 1 A 1 HETATM 28 O O28 585 . . . B 2 -14.793 8.667 -19.802 1 29.31 ? O28 585 1 A 1 HETATM 29 O O29 585 . . . B 2 -15.272 6.118 -23.812 1 25.13 ? O29 585 1 A 1 HETATM 30 C C30 585 . . . B 2 -12.612 9.591 -15.502 1 26.25 ? C30 585 1 A 1 HETATM 31 C C31 585 . . . B 2 -10.715 8.248 -14.675 1 26.04 ? C31 585 1 A 1 HETATM 32 C C32 585 . . . B 2 -12.768 7.193 -21.602 1 29.36 ? C32 585 1 A 1 HETATM 33 C C33 585 . . . B 2 -15.571 9.263 -18.752 1 30.34 ? C33 585 1 A 1 HETATM 34 C C34 585 . . . B 2 -16.262 5.445 -24.615 1 21.2 ? C34 585 1 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 650 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 34 #