data_3PJ1 # _model_server_result.job_id 0MJIPRGzQ-Bf_FWL1UFYpA _model_server_result.datetime_utc '2024-12-26 14:01:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3pj1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1}' # _entry.id 3PJ1 # _exptl.entry_id 3PJ1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 515.435 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3-(2,6-dichlorophenyl)-7-({4-[2-(diethylamino)ethoxy]phenyl}amino)-1-methyl-3,4-dihydropyrimido[4,5-d]pyrimidin-2(1H)-one _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3PJ1 _cell.length_a 71.728 _cell.length_b 104.818 _cell.length_c 38.17 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3PJ1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # _chem_comp.formula 'C25 H28 Cl2 N6 O2' _chem_comp.formula_weight 515.435 _chem_comp.id LHL _chem_comp.mon_nstd_flag . _chem_comp.name 3-(2,6-dichlorophenyl)-7-({4-[2-(diethylamino)ethoxy]phenyl}amino)-1-methyl-3,4-dihydropyrimido[4,5-d]pyrimidin-2(1H)-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 LHL doub 194 n y N1 C10 LHL sing 195 n y C2 N2 LHL sing 196 n n C2 N3 LHL sing 197 n y N2 C21 LHL sing 198 n n N3 C4 LHL doub 199 n y C4 N5 LHL sing 200 n n C4 C9 LHL sing 201 n y C5 N5 LHL sing 202 n n N5 C6 LHL sing 203 n n C6 O6 LHL doub 204 n n C6 N7 LHL sing 205 n n N7 C8 LHL sing 206 n n N7 C71 LHL sing 207 n n C8 C9 LHL sing 208 n n C9 C10 LHL doub 209 n y C21 C22 LHL doub 210 n y C21 C26 LHL sing 211 n y C22 C23 LHL sing 212 n y C23 C24 LHL doub 213 n y C24 O24 LHL sing 214 n n C24 C25 LHL sing 215 n y O24 C27 LHL sing 216 n n C25 C26 LHL doub 217 n y C27 C28 LHL sing 218 n n C28 N28 LHL sing 219 n n N28 C29 LHL sing 220 n n N28 C31 LHL sing 221 n n C29 C30 LHL sing 222 n n C31 C32 LHL sing 223 n n C71 C72 LHL doub 224 n y C71 C76 LHL sing 225 n y C72 CL72 LHL sing 226 n n C72 C73 LHL sing 227 n y C73 C74 LHL doub 228 n y C74 C75 LHL sing 229 n y C75 C76 LHL doub 230 n y C76 CL76 LHL sing 231 n n N2 HN2 LHL sing 232 n n C5 H5 LHL sing 233 n n C5 H5A LHL sing 234 n n C5 H5B LHL sing 235 n n C8 H8 LHL sing 236 n n C8 H8A LHL sing 237 n n C10 H10 LHL sing 238 n n C22 H22 LHL sing 239 n n C23 H23 LHL sing 240 n n C25 H25 LHL sing 241 n n C26 H26 LHL sing 242 n n C27 H27 LHL sing 243 n n C27 H27A LHL sing 244 n n C28 H28 LHL sing 245 n n C28 H28A LHL sing 246 n n C29 H29 LHL sing 247 n n C29 H29A LHL sing 248 n n C30 H30 LHL sing 249 n n C30 H30A LHL sing 250 n n C30 H30B LHL sing 251 n n C31 H31 LHL sing 252 n n C31 H31A LHL sing 253 n n C32 H32 LHL sing 254 n n C32 H32A LHL sing 255 n n C32 H32B LHL sing 256 n n C73 H73 LHL sing 257 n n C74 H74 LHL sing 258 n n C75 H75 LHL sing 259 n n # _atom_sites.entry_id 3PJ1 _atom_sites.fract_transf_matrix[1][1] 0.013942 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00954 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.026199 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 LHL A 1 1 1 LHL LHL . C 2 LHL A 1 2 2 LHL LHL . D 3 HOH A 1 3 3 HOH HOH . D 3 HOH A 2 5 5 HOH HOH . D 3 HOH A 3 6 6 HOH HOH . D 3 HOH A 4 7 7 HOH HOH . D 3 HOH A 5 8 8 HOH HOH . D 3 HOH A 6 10 10 HOH HOH . D 3 HOH A 7 11 11 HOH HOH . D 3 HOH A 8 12 12 HOH HOH . D 3 HOH A 9 13 13 HOH HOH . D 3 HOH A 10 15 15 HOH HOH . D 3 HOH A 11 16 16 HOH HOH . D 3 HOH A 12 17 17 HOH HOH . D 3 HOH A 13 18 18 HOH HOH . D 3 HOH A 14 19 19 HOH HOH . D 3 HOH A 15 21 21 HOH HOH . D 3 HOH A 16 22 22 HOH HOH . D 3 HOH A 17 23 23 HOH HOH . D 3 HOH A 18 24 24 HOH HOH . D 3 HOH A 19 26 26 HOH HOH . D 3 HOH A 20 27 27 HOH HOH . D 3 HOH A 21 28 28 HOH HOH . D 3 HOH A 22 29 29 HOH HOH . D 3 HOH A 23 30 30 HOH HOH . D 3 HOH A 24 31 31 HOH HOH . D 3 HOH A 25 32 32 HOH HOH . D 3 HOH A 26 33 33 HOH HOH . D 3 HOH A 27 35 35 HOH HOH . D 3 HOH A 28 36 36 HOH HOH . D 3 HOH A 29 37 37 HOH HOH . D 3 HOH A 30 38 38 HOH HOH . D 3 HOH A 31 39 39 HOH HOH . D 3 HOH A 32 40 40 HOH HOH . D 3 HOH A 33 42 42 HOH HOH . D 3 HOH A 34 43 43 HOH HOH . D 3 HOH A 35 44 44 HOH HOH . D 3 HOH A 36 45 45 HOH HOH . D 3 HOH A 37 46 46 HOH HOH . D 3 HOH A 38 47 47 HOH HOH . D 3 HOH A 39 48 48 HOH HOH . D 3 HOH A 40 49 49 HOH HOH . D 3 HOH A 41 50 50 HOH HOH . D 3 HOH A 42 51 51 HOH HOH . D 3 HOH A 43 52 52 HOH HOH . D 3 HOH A 44 53 53 HOH HOH . D 3 HOH A 45 54 54 HOH HOH . D 3 HOH A 46 55 55 HOH HOH . D 3 HOH A 47 56 56 HOH HOH . D 3 HOH A 48 58 58 HOH HOH . D 3 HOH A 49 59 59 HOH HOH . D 3 HOH A 50 60 60 HOH HOH . D 3 HOH A 51 63 63 HOH HOH . D 3 HOH A 52 64 64 HOH HOH . D 3 HOH A 53 65 65 HOH HOH . D 3 HOH A 54 66 66 HOH HOH . D 3 HOH A 55 67 67 HOH HOH . D 3 HOH A 56 68 68 HOH HOH . D 3 HOH A 57 69 69 HOH HOH . D 3 HOH A 58 70 70 HOH HOH . D 3 HOH A 59 71 71 HOH HOH . D 3 HOH A 60 73 73 HOH HOH . D 3 HOH A 61 74 74 HOH HOH . D 3 HOH A 62 76 76 HOH HOH . D 3 HOH A 63 77 77 HOH HOH . D 3 HOH A 64 78 78 HOH HOH . D 3 HOH A 65 79 79 HOH HOH . D 3 HOH A 66 80 80 HOH HOH . D 3 HOH A 67 81 81 HOH HOH . D 3 HOH A 68 82 82 HOH HOH . D 3 HOH A 69 83 83 HOH HOH . D 3 HOH A 70 84 84 HOH HOH . D 3 HOH A 71 85 85 HOH HOH . D 3 HOH A 72 86 86 HOH HOH . D 3 HOH A 73 87 87 HOH HOH . D 3 HOH A 74 88 88 HOH HOH . D 3 HOH A 75 89 89 HOH HOH . D 3 HOH A 76 91 91 HOH HOH . D 3 HOH A 77 92 92 HOH HOH . D 3 HOH A 78 94 94 HOH HOH . D 3 HOH A 79 95 95 HOH HOH . D 3 HOH A 80 96 96 HOH HOH . D 3 HOH A 81 97 97 HOH HOH . D 3 HOH A 82 98 98 HOH HOH . D 3 HOH A 83 100 100 HOH HOH . D 3 HOH A 84 102 102 HOH HOH . D 3 HOH A 85 103 103 HOH HOH . D 3 HOH A 86 105 105 HOH HOH . D 3 HOH A 87 107 107 HOH HOH . D 3 HOH A 88 109 109 HOH HOH . D 3 HOH A 89 112 112 HOH HOH . D 3 HOH A 90 116 116 HOH HOH . D 3 HOH A 91 120 120 HOH HOH . D 3 HOH A 92 122 122 HOH HOH . D 3 HOH A 93 138 138 HOH HOH . D 3 HOH A 94 146 146 HOH HOH . D 3 HOH A 95 148 148 HOH HOH . D 3 HOH A 96 150 150 HOH HOH . D 3 HOH A 97 165 165 HOH HOH . D 3 HOH A 98 175 175 HOH HOH . D 3 HOH A 99 199 199 HOH HOH . D 3 HOH A 100 202 202 HOH HOH . D 3 HOH A 101 203 203 HOH HOH . D 3 HOH A 102 204 204 HOH HOH . D 3 HOH A 103 206 206 HOH HOH . D 3 HOH A 104 207 207 HOH HOH . D 3 HOH A 105 209 209 HOH HOH . D 3 HOH A 106 210 210 HOH HOH . D 3 HOH A 107 221 221 HOH HOH . D 3 HOH A 108 660 1 HOH HOH . D 3 HOH A 109 1004 1004 HOH HOH . D 3 HOH A 110 1005 1005 HOH HOH . D 3 HOH A 111 1007 1007 HOH HOH . D 3 HOH A 112 1008 1008 HOH HOH . D 3 HOH A 113 1009 1009 HOH HOH . D 3 HOH A 114 1010 1010 HOH HOH . D 3 HOH A 115 1011 1011 HOH HOH . D 3 HOH A 116 1012 1012 HOH HOH . D 3 HOH A 117 1014 1014 HOH HOH . D 3 HOH A 118 1015 1015 HOH HOH . D 3 HOH A 119 1017 1017 HOH HOH . D 3 HOH A 120 1018 1018 HOH HOH . D 3 HOH A 121 1019 1019 HOH HOH . D 3 HOH A 122 1020 1020 HOH HOH . D 3 HOH A 123 1021 1021 HOH HOH . D 3 HOH A 124 1025 1025 HOH HOH . D 3 HOH A 125 1027 1027 HOH HOH . D 3 HOH A 126 1028 1028 HOH HOH . D 3 HOH A 127 1029 1029 HOH HOH . D 3 HOH A 128 1030 1030 HOH HOH . D 3 HOH A 129 1032 1032 HOH HOH . D 3 HOH A 130 1033 1033 HOH HOH . D 3 HOH A 131 1034 1034 HOH HOH . D 3 HOH A 132 1036 1036 HOH HOH . D 3 HOH A 133 1037 1037 HOH HOH . D 3 HOH A 134 1040 1040 HOH HOH . D 3 HOH A 135 1041 1041 HOH HOH . D 3 HOH A 136 1042 1042 HOH HOH . D 3 HOH A 137 1043 1043 HOH HOH . D 3 HOH A 138 1045 1045 HOH HOH . D 3 HOH A 139 1047 1047 HOH HOH . D 3 HOH A 140 1049 1049 HOH HOH . D 3 HOH A 141 1050 1050 HOH HOH . D 3 HOH A 142 1051 1051 HOH HOH . D 3 HOH A 143 1052 1052 HOH HOH . D 3 HOH A 144 1053 1053 HOH HOH . D 3 HOH A 145 1054 1054 HOH HOH . D 3 HOH A 146 1056 1056 HOH HOH . D 3 HOH A 147 1057 1057 HOH HOH . D 3 HOH A 148 1060 1060 HOH HOH . D 3 HOH A 149 1061 1061 HOH HOH . D 3 HOH A 150 1064 1064 HOH HOH . D 3 HOH A 151 1066 1066 HOH HOH . D 3 HOH A 152 1067 1067 HOH HOH . D 3 HOH A 153 1069 1069 HOH HOH . D 3 HOH A 154 1070 1070 HOH HOH . D 3 HOH A 155 1071 1071 HOH HOH . D 3 HOH A 156 1072 1072 HOH HOH . D 3 HOH A 157 1073 1073 HOH HOH . D 3 HOH A 158 1074 1074 HOH HOH . D 3 HOH A 159 1075 1075 HOH HOH . D 3 HOH A 160 1076 1076 HOH HOH . D 3 HOH A 161 1079 1079 HOH HOH . D 3 HOH A 162 1080 1080 HOH HOH . D 3 HOH A 163 1081 1081 HOH HOH . D 3 HOH A 164 1083 1083 HOH HOH . D 3 HOH A 165 1086 1086 HOH HOH . D 3 HOH A 166 1087 1087 HOH HOH . D 3 HOH A 167 1088 1088 HOH HOH . D 3 HOH A 168 1089 1089 HOH HOH . D 3 HOH A 169 1091 1091 HOH HOH . D 3 HOH A 170 1100 1100 HOH HOH . D 3 HOH A 171 1109 1109 HOH HOH . D 3 HOH A 172 1113 1113 HOH HOH . D 3 HOH A 173 1122 1122 HOH HOH . D 3 HOH A 174 1127 1127 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 LHL . . . B 2 -21.062 4.911 -18.926 1 25.86 ? N1 LHL 1 A 1 HETATM 2 C C2 LHL . . . B 2 -19.807 5.362 -19.174 1 26.15 ? C2 LHL 1 A 1 HETATM 3 N N2 LHL . . . B 2 -19.446 5.569 -20.463 1 26.87 ? N2 LHL 1 A 1 HETATM 4 N N3 LHL . . . B 2 -18.955 5.606 -18.153 1 25.73 ? N3 LHL 1 A 1 HETATM 5 C C4 LHL . . . B 2 -19.331 5.398 -16.873 1 25.77 ? C4 LHL 1 A 1 HETATM 6 C C5 LHL . . . B 2 -17.08 6.151 -16.098 1 26.15 ? C5 LHL 1 A 1 HETATM 7 N N5 LHL . . . B 2 -18.434 5.657 -15.814 1 25.87 ? N5 LHL 1 A 1 HETATM 8 C C6 LHL . . . B 2 -18.847 5.42 -14.481 1 26.08 ? C6 LHL 1 A 1 HETATM 9 O O6 LHL . . . B 2 -18.062 5.636 -13.528 1 25.91 ? O6 LHL 1 A 1 HETATM 10 N N7 LHL . . . B 2 -20.155 4.957 -14.229 1 25.89 ? N7 LHL 1 A 1 HETATM 11 C C8 LHL . . . B 2 -21.034 4.714 -15.301 1 26.38 ? C8 LHL 1 A 1 HETATM 12 C C9 LHL . . . B 2 -20.618 4.936 -16.611 1 25.96 ? C9 LHL 1 A 1 HETATM 13 C C10 LHL . . . B 2 -21.482 4.697 -17.672 1 25.72 ? C10 LHL 1 A 1 HETATM 14 C C21 LHL . . . B 2 -18.209 5.872 -20.936 1 28.39 ? C21 LHL 1 A 1 HETATM 15 C C22 LHL . . . B 2 -17.298 6.64 -20.208 1 28.77 ? C22 LHL 1 A 1 HETATM 16 C C23 LHL . . . B 2 -16.045 6.944 -20.743 1 29.38 ? C23 LHL 1 A 1 HETATM 17 C C24 LHL . . . B 2 -15.701 6.492 -22.014 1 29.24 ? C24 LHL 1 A 1 HETATM 18 O O24 LHL . . . B 2 -14.461 6.812 -22.517 1 30.99 ? O24 LHL 1 A 1 HETATM 19 C C25 LHL . . . B 2 -16.612 5.731 -22.751 1 29.14 ? C25 LHL 1 A 1 HETATM 20 C C26 LHL . . . B 2 -17.862 5.425 -22.213 1 28.44 ? C26 LHL 1 A 1 HETATM 21 C C27 LHL . . . B 2 -14.092 6.517 -23.866 1 34.27 ? C27 LHL 1 A 1 HETATM 22 C C28 LHL . . . B 2 -12.762 7.19 -24.217 1 36.76 ? C28 LHL 1 A 1 HETATM 23 N N28 LHL . . . B 2 -11.606 6.801 -23.373 1 38.53 ? N28 LHL 1 A 1 HETATM 24 C C29 LHL . . . B 2 -11.392 7.796 -22.303 1 39.56 ? C29 LHL 1 A 1 HETATM 25 C C30 LHL . . . B 2 -10.209 8.687 -22.628 1 40.13 ? C30 LHL 1 A 1 HETATM 26 C C31 LHL . . . B 2 -11.734 5.455 -22.783 1 39.02 ? C31 LHL 1 A 1 HETATM 27 C C32 LHL . . . B 2 -10.64 4.542 -23.292 1 39.76 ? C32 LHL 1 A 1 HETATM 28 C C71 LHL . . . B 2 -20.554 4.695 -12.908 1 26.36 ? C71 LHL 1 A 1 HETATM 29 C C72 LHL . . . B 2 -20.506 3.371 -12.495 1 26.84 ? C72 LHL 1 A 1 HETATM 30 CL CL72 LHL . . . B 2 -19.975 2.115 -13.665 1 26.51 ? CL72 LHL 1 A 1 HETATM 31 C C73 LHL . . . B 2 -20.867 3.028 -11.193 1 27.21 ? C73 LHL 1 A 1 HETATM 32 C C74 LHL . . . B 2 -21.278 4.023 -10.303 1 27.15 ? C74 LHL 1 A 1 HETATM 33 C C75 LHL . . . B 2 -21.319 5.354 -10.719 1 27.14 ? C75 LHL 1 A 1 HETATM 34 C C76 LHL . . . B 2 -20.95 5.677 -12.021 1 26.96 ? C76 LHL 1 A 1 HETATM 35 CL CL76 LHL . . . B 2 -20.994 7.361 -12.588 1 29.31 ? CL76 LHL 1 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 321 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 35 #