data_3PJC # _model_server_result.job_id NXOQeYnjQqkbvAIaFfyNBQ _model_server_result.datetime_utc '2024-12-21 16:23:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3pjc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":800}' # _entry.id 3PJC # _exptl.entry_id 3PJC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 455.389 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3-(1H-indol-3-yl)-4-[2-(4-oxopiperidin-1-yl)-5-(trifluoromethyl)pyrimidin-4-yl]-1H-pyrrole-2,5-dione _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3PJC _cell.length_a 41.722 _cell.length_b 71.991 _cell.length_c 107.8 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3PJC _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C22 H16 F3 N5 O3' _chem_comp.formula_weight 455.389 _chem_comp.id PJC _chem_comp.mon_nstd_flag . _chem_comp.name 3-(1H-indol-3-yl)-4-[2-(4-oxopiperidin-1-yl)-5-(trifluoromethyl)pyrimidin-4-yl]-1H-pyrrole-2,5-dione _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C2 C5 PJC sing 260 n n C5 C10 PJC doub 261 n y C5 C6 PJC sing 262 n y C27 C6 PJC sing 263 n n C6 N7 PJC doub 264 n y N9 C8 PJC doub 265 n y N7 C8 PJC sing 266 n y C8 N12 PJC sing 267 n n C10 N9 PJC sing 268 n y C10 H10 PJC sing 269 n n N12 C23 PJC sing 270 n n N12 C13 PJC sing 271 n n C13 C16 PJC sing 272 n n C13 H13 PJC sing 273 n n C13 H13A PJC sing 274 n n C23 C20 PJC sing 275 n n C20 C19 PJC sing 276 n n C20 H20 PJC sing 277 n n C20 H20A PJC sing 278 n n C29 C28 PJC sing 279 n n C27 C28 PJC doub 280 n n C28 C35 PJC sing 281 n n F1 C2 PJC sing 282 n n F3 C2 PJC sing 283 n n F4 C2 PJC sing 284 n n C16 C19 PJC sing 285 n n C16 H16 PJC sing 286 n n C16 H16A PJC sing 287 n n C19 O26 PJC doub 288 n n C23 H23 PJC sing 289 n n C23 H23A PJC sing 290 n n C32 C27 PJC sing 291 n n N30 C29 PJC sing 292 n n C29 O34 PJC doub 293 n n N30 C32 PJC sing 294 n n N30 HN30 PJC sing 295 n n O33 C32 PJC doub 296 n n C35 C41 PJC sing 297 n n C35 C36 PJC doub 298 n n C36 N38 PJC sing 299 n n C36 H36 PJC sing 300 n n C40 N38 PJC sing 301 n n C41 C40 PJC doub 302 n y C40 C48 PJC sing 303 n y C42 C41 PJC sing 304 n y C42 C44 PJC doub 305 n y C42 H42 PJC sing 306 n n C44 C46 PJC sing 307 n y C44 H44 PJC sing 308 n n C46 C48 PJC doub 309 n y C46 H46 PJC sing 310 n n C48 H48 PJC sing 311 n n N38 HN38 PJC sing 312 n n # _atom_sites.entry_id 3PJC _atom_sites.fract_transf_matrix[1][1] 0.023968 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013891 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009276 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PJC A 1 800 800 PJC PJC . C 3 HOH A 1 1 1 HOH HOH . C 3 HOH A 2 2 2 HOH HOH . C 3 HOH A 3 3 3 HOH HOH . C 3 HOH A 4 4 4 HOH HOH . C 3 HOH A 5 5 5 HOH HOH . C 3 HOH A 6 6 6 HOH HOH . C 3 HOH A 7 7 7 HOH HOH . C 3 HOH A 8 8 8 HOH HOH . C 3 HOH A 9 9 9 HOH HOH . C 3 HOH A 10 10 10 HOH HOH . C 3 HOH A 11 11 11 HOH HOH . C 3 HOH A 12 12 12 HOH HOH . C 3 HOH A 13 13 13 HOH HOH . C 3 HOH A 14 14 14 HOH HOH . C 3 HOH A 15 15 15 HOH HOH . C 3 HOH A 16 16 16 HOH HOH . C 3 HOH A 17 17 17 HOH HOH . C 3 HOH A 18 18 18 HOH HOH . C 3 HOH A 19 19 19 HOH HOH . C 3 HOH A 20 20 20 HOH HOH . C 3 HOH A 21 21 21 HOH HOH . C 3 HOH A 22 22 22 HOH HOH . C 3 HOH A 23 23 23 HOH HOH . C 3 HOH A 24 24 24 HOH HOH . C 3 HOH A 25 25 25 HOH HOH . C 3 HOH A 26 26 26 HOH HOH . C 3 HOH A 27 27 27 HOH HOH . C 3 HOH A 28 28 28 HOH HOH . C 3 HOH A 29 29 29 HOH HOH . C 3 HOH A 30 30 30 HOH HOH . C 3 HOH A 31 31 31 HOH HOH . C 3 HOH A 32 32 32 HOH HOH . C 3 HOH A 33 33 33 HOH HOH . C 3 HOH A 34 34 34 HOH HOH . C 3 HOH A 35 35 35 HOH HOH . C 3 HOH A 36 36 36 HOH HOH . C 3 HOH A 37 37 37 HOH HOH . C 3 HOH A 38 38 38 HOH HOH . C 3 HOH A 39 39 39 HOH HOH . C 3 HOH A 40 40 40 HOH HOH . C 3 HOH A 41 41 41 HOH HOH . C 3 HOH A 42 42 42 HOH HOH . C 3 HOH A 43 43 43 HOH HOH . C 3 HOH A 44 44 44 HOH HOH . C 3 HOH A 45 45 45 HOH HOH . C 3 HOH A 46 46 46 HOH HOH . C 3 HOH A 47 47 47 HOH HOH . C 3 HOH A 48 48 48 HOH HOH . C 3 HOH A 49 49 49 HOH HOH . C 3 HOH A 50 50 50 HOH HOH . C 3 HOH A 51 51 51 HOH HOH . C 3 HOH A 52 52 52 HOH HOH . C 3 HOH A 53 53 53 HOH HOH . C 3 HOH A 54 54 54 HOH HOH . C 3 HOH A 55 55 55 HOH HOH . C 3 HOH A 56 56 56 HOH HOH . C 3 HOH A 57 57 57 HOH HOH . C 3 HOH A 58 58 58 HOH HOH . C 3 HOH A 59 59 59 HOH HOH . C 3 HOH A 60 60 60 HOH HOH . C 3 HOH A 61 61 61 HOH HOH . C 3 HOH A 62 62 62 HOH HOH . C 3 HOH A 63 63 63 HOH HOH . C 3 HOH A 64 64 64 HOH HOH . C 3 HOH A 65 65 65 HOH HOH . C 3 HOH A 66 66 66 HOH HOH . C 3 HOH A 67 67 67 HOH HOH . C 3 HOH A 68 68 68 HOH HOH . C 3 HOH A 69 69 69 HOH HOH . C 3 HOH A 70 70 70 HOH HOH . C 3 HOH A 71 71 71 HOH HOH . C 3 HOH A 72 72 72 HOH HOH . C 3 HOH A 73 73 73 HOH HOH . C 3 HOH A 74 74 74 HOH HOH . C 3 HOH A 75 75 75 HOH HOH . C 3 HOH A 76 76 76 HOH HOH . C 3 HOH A 77 77 77 HOH HOH . C 3 HOH A 78 78 78 HOH HOH . C 3 HOH A 79 79 79 HOH HOH . C 3 HOH A 80 80 80 HOH HOH . C 3 HOH A 81 81 81 HOH HOH . C 3 HOH A 82 82 82 HOH HOH . C 3 HOH A 83 83 83 HOH HOH . C 3 HOH A 84 84 84 HOH HOH . C 3 HOH A 85 85 85 HOH HOH . C 3 HOH A 86 86 86 HOH HOH . C 3 HOH A 87 87 87 HOH HOH . C 3 HOH A 88 88 88 HOH HOH . C 3 HOH A 89 89 89 HOH HOH . C 3 HOH A 90 90 90 HOH HOH . C 3 HOH A 91 91 91 HOH HOH . C 3 HOH A 92 92 92 HOH HOH . C 3 HOH A 93 93 93 HOH HOH . C 3 HOH A 94 94 94 HOH HOH . C 3 HOH A 95 95 95 HOH HOH . C 3 HOH A 96 96 96 HOH HOH . C 3 HOH A 97 97 97 HOH HOH . C 3 HOH A 98 98 98 HOH HOH . C 3 HOH A 99 99 99 HOH HOH . C 3 HOH A 100 100 100 HOH HOH . C 3 HOH A 101 101 101 HOH HOH . C 3 HOH A 102 102 102 HOH HOH . C 3 HOH A 103 103 103 HOH HOH . C 3 HOH A 104 104 104 HOH HOH . C 3 HOH A 105 105 105 HOH HOH . C 3 HOH A 106 106 106 HOH HOH . C 3 HOH A 107 107 107 HOH HOH . C 3 HOH A 108 108 108 HOH HOH . C 3 HOH A 109 109 109 HOH HOH . C 3 HOH A 110 110 110 HOH HOH . C 3 HOH A 111 111 111 HOH HOH . C 3 HOH A 112 112 112 HOH HOH . C 3 HOH A 113 113 113 HOH HOH . C 3 HOH A 114 114 114 HOH HOH . C 3 HOH A 115 115 115 HOH HOH . C 3 HOH A 116 116 116 HOH HOH . C 3 HOH A 117 117 117 HOH HOH . C 3 HOH A 118 118 118 HOH HOH . C 3 HOH A 119 119 119 HOH HOH . C 3 HOH A 120 120 120 HOH HOH . C 3 HOH A 121 121 121 HOH HOH . C 3 HOH A 122 122 122 HOH HOH . C 3 HOH A 123 123 123 HOH HOH . C 3 HOH A 124 124 124 HOH HOH . C 3 HOH A 125 125 125 HOH HOH . C 3 HOH A 126 126 126 HOH HOH . C 3 HOH A 127 127 127 HOH HOH . C 3 HOH A 128 128 128 HOH HOH . C 3 HOH A 129 129 129 HOH HOH . C 3 HOH A 130 130 130 HOH HOH . C 3 HOH A 131 131 131 HOH HOH . C 3 HOH A 132 132 132 HOH HOH . C 3 HOH A 133 133 133 HOH HOH . C 3 HOH A 134 134 134 HOH HOH . C 3 HOH A 135 135 135 HOH HOH . C 3 HOH A 136 136 136 HOH HOH . C 3 HOH A 137 137 137 HOH HOH . C 3 HOH A 138 138 138 HOH HOH . C 3 HOH A 139 139 139 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C5 PJC . . . B 2 6.906 -4.989 8.41 1 23.76 ? C5 PJC 800 A 1 HETATM 2 C C6 PJC . . . B 2 7.839 -4.393 9.297 1 22.37 ? C6 PJC 800 A 1 HETATM 3 C C8 PJC . . . B 2 6.393 -4.925 11.129 1 22.75 ? C8 PJC 800 A 1 HETATM 4 C C10 PJC . . . B 2 5.772 -5.608 8.969 1 20.82 ? C10 PJC 800 A 1 HETATM 5 N N12 PJC . . . B 2 6.241 -4.971 12.488 1 22.24 ? N12 PJC 800 A 1 HETATM 6 C C13 PJC . . . B 2 7.187 -4.292 13.385 1 21.8 ? C13 PJC 800 A 1 HETATM 7 C C20 PJC . . . B 2 6.152 -7.123 13.576 1 22.88 ? C20 PJC 800 A 1 HETATM 8 C C28 PJC . . . B 2 10.384 -3.928 9.356 1 17.98 ? C28 PJC 800 A 1 HETATM 9 F F1 PJC . . . B 2 6.382 -4.273 6.185 1 26.83 ? F1 PJC 800 A 1 HETATM 10 C C2 PJC . . . B 2 7.097 -5.173 6.906 1 24.75 ? C2 PJC 800 A 1 HETATM 11 F F3 PJC . . . B 2 8.404 -5.11 6.559 1 20.23 ? F3 PJC 800 A 1 HETATM 12 F F4 PJC . . . B 2 6.703 -6.436 6.603 1 29 ? F4 PJC 800 A 1 HETATM 13 N N7 PJC . . . B 2 7.52 -4.375 10.604 1 23.21 ? N7 PJC 800 A 1 HETATM 14 N N9 PJC . . . B 2 5.564 -5.601 10.296 1 19.73 ? N9 PJC 800 A 1 HETATM 15 C C16 PJC . . . B 2 8.178 -5.409 13.843 1 22.93 ? C16 PJC 800 A 1 HETATM 16 C C19 PJC . . . B 2 7.419 -6.655 14.281 1 24.23 ? C19 PJC 800 A 1 HETATM 17 C C23 PJC . . . B 2 5.293 -5.896 13.133 1 21.86 ? C23 PJC 800 A 1 HETATM 18 O O26 PJC . . . B 2 7.833 -7.283 15.229 1 28.7 ? O26 PJC 800 A 1 HETATM 19 C C27 PJC . . . B 2 9.126 -3.666 8.931 1 16.19 ? C27 PJC 800 A 1 HETATM 20 C C29 PJC . . . B 2 11.224 -2.894 8.715 1 21.39 ? C29 PJC 800 A 1 HETATM 21 N N30 PJC . . . B 2 10.494 -2.154 7.862 1 20.71 ? N30 PJC 800 A 1 HETATM 22 C C32 PJC . . . B 2 9.224 -2.586 7.951 1 18.27 ? C32 PJC 800 A 1 HETATM 23 O O33 PJC . . . B 2 8.27 -2.147 7.337 1 19.76 ? O33 PJC 800 A 1 HETATM 24 O O34 PJC . . . B 2 12.42 -2.762 8.902 1 23.48 ? O34 PJC 800 A 1 HETATM 25 C C35 PJC . . . B 2 10.872 -4.837 10.428 1 16.77 ? C35 PJC 800 A 1 HETATM 26 C C36 PJC . . . B 2 11.967 -4.616 11.191 1 19.2 ? C36 PJC 800 A 1 HETATM 27 N N38 PJC . . . B 2 12.136 -5.578 12.059 1 21.24 ? N38 PJC 800 A 1 HETATM 28 C C40 PJC . . . B 2 11.2 -6.531 11.916 1 19.5 ? C40 PJC 800 A 1 HETATM 29 C C41 PJC . . . B 2 10.336 -6.18 10.869 1 16.03 ? C41 PJC 800 A 1 HETATM 30 C C42 PJC . . . B 2 9.293 -7.033 10.488 1 17.28 ? C42 PJC 800 A 1 HETATM 31 C C44 PJC . . . B 2 9.119 -8.21 11.246 1 18.55 ? C44 PJC 800 A 1 HETATM 32 C C46 PJC . . . B 2 9.978 -8.542 12.329 1 18.91 ? C46 PJC 800 A 1 HETATM 33 C C48 PJC . . . B 2 11.058 -7.708 12.672 1 18.06 ? C48 PJC 800 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 323 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 33 #