data_3PJE # _model_server_result.job_id Sg81QbkdQgbOL2w1nG24MQ _model_server_result.datetime_utc '2024-12-04 07:13:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3pje # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":701}' # _entry.id 3PJE # _exptl.entry_id 3PJE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 663.425 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description NICOTINAMIDE-ADENINE-DINUCLEOTIDE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3PJE _cell.length_a 80.854 _cell.length_b 80.854 _cell.length_c 328.404 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3PJE _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # _chem_comp.formula 'C21 H27 N7 O14 P2' _chem_comp.formula_weight 663.425 _chem_comp.id NAD _chem_comp.mon_nstd_flag . _chem_comp.name NICOTINAMIDE-ADENINE-DINUCLEOTIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAD doub 237 n n PA O2A NAD sing 238 n n PA O5B NAD sing 239 n n PA O3 NAD sing 240 n n O2A HOA2 NAD sing 241 n n O5B C5B NAD sing 242 n n C5B C4B NAD sing 243 n n C5B H51A NAD sing 244 n n C5B H52A NAD sing 245 n n C4B O4B NAD sing 246 n n C4B C3B NAD sing 247 n n C4B H4B NAD sing 248 n n O4B C1B NAD sing 249 n n C3B O3B NAD sing 250 n n C3B C2B NAD sing 251 n n C3B H3B NAD sing 252 n n O3B HO3A NAD sing 253 n n C2B O2B NAD sing 254 n n C2B C1B NAD sing 255 n n C2B H2B NAD sing 256 n n O2B HO2A NAD sing 257 n n C1B N9A NAD sing 258 n n C1B H1B NAD sing 259 n n N9A C8A NAD sing 260 n y N9A C4A NAD sing 261 n y C8A N7A NAD doub 262 n y C8A H8A NAD sing 263 n n N7A C5A NAD sing 264 n y C5A C6A NAD sing 265 n y C5A C4A NAD doub 266 n y C6A N6A NAD sing 267 n n C6A N1A NAD doub 268 n y N6A H61A NAD sing 269 n n N6A H62A NAD sing 270 n n N1A C2A NAD sing 271 n y C2A N3A NAD doub 272 n y C2A H2A NAD sing 273 n n N3A C4A NAD sing 274 n y O3 PN NAD sing 275 n n PN O1N NAD doub 276 n n PN O2N NAD sing 277 n n PN O5D NAD sing 278 n n O5D C5D NAD sing 279 n n C5D C4D NAD sing 280 n n C5D H51N NAD sing 281 n n C5D H52N NAD sing 282 n n C4D O4D NAD sing 283 n n C4D C3D NAD sing 284 n n C4D H4D NAD sing 285 n n O4D C1D NAD sing 286 n n C3D O3D NAD sing 287 n n C3D C2D NAD sing 288 n n C3D H3D NAD sing 289 n n O3D HO3N NAD sing 290 n n C2D O2D NAD sing 291 n n C2D C1D NAD sing 292 n n C2D H2D NAD sing 293 n n O2D HO2N NAD sing 294 n n C1D N1N NAD sing 295 n n C1D H1D NAD sing 296 n n N1N C2N NAD sing 297 n y N1N C6N NAD doub 298 n y C2N C3N NAD doub 299 n y C2N H2N NAD sing 300 n n C3N C7N NAD sing 301 n n C3N C4N NAD sing 302 n y C7N O7N NAD doub 303 n n C7N N7N NAD sing 304 n n N7N H71N NAD sing 305 n n N7N H72N NAD sing 306 n n C4N C5N NAD doub 307 n y C4N H4N NAD sing 308 n n C5N C6N NAD sing 309 n y C5N H5N NAD sing 310 n n C6N H6N NAD sing 311 n n # _atom_sites.entry_id 3PJE _atom_sites.fract_transf_matrix[1][1] 0.012368 _atom_sites.fract_transf_matrix[1][2] 0.007141 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014281 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003045 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NAD A 1 701 701 NAD NAD . D 3 TCL A 1 801 801 TCL TCL . E 2 NAD B 1 702 702 NAD NAD . F 3 TCL B 1 802 802 TCL TCL . G 4 HOH A 1 802 802 HOH HOH . G 4 HOH A 2 803 803 HOH HOH . G 4 HOH A 3 804 804 HOH HOH . G 4 HOH A 4 805 805 HOH HOH . G 4 HOH A 5 806 806 HOH HOH . G 4 HOH A 6 807 807 HOH HOH . G 4 HOH A 7 808 808 HOH HOH . G 4 HOH A 8 809 809 HOH HOH . G 4 HOH A 9 810 810 HOH HOH . G 4 HOH A 10 811 811 HOH HOH . G 4 HOH A 11 812 812 HOH HOH . G 4 HOH A 12 813 813 HOH HOH . G 4 HOH A 13 814 814 HOH HOH . G 4 HOH A 14 815 815 HOH HOH . G 4 HOH A 15 816 816 HOH HOH . G 4 HOH A 16 817 817 HOH HOH . G 4 HOH A 17 818 818 HOH HOH . G 4 HOH A 18 819 819 HOH HOH . G 4 HOH A 19 820 820 HOH HOH . G 4 HOH A 20 821 821 HOH HOH . G 4 HOH A 21 822 822 HOH HOH . G 4 HOH A 22 823 823 HOH HOH . G 4 HOH A 23 824 824 HOH HOH . G 4 HOH A 24 825 825 HOH HOH . G 4 HOH A 25 826 826 HOH HOH . G 4 HOH A 26 827 827 HOH HOH . G 4 HOH A 27 828 828 HOH HOH . G 4 HOH A 28 829 829 HOH HOH . G 4 HOH A 29 830 830 HOH HOH . G 4 HOH A 30 831 831 HOH HOH . G 4 HOH A 31 832 832 HOH HOH . G 4 HOH A 32 833 833 HOH HOH . G 4 HOH A 33 834 834 HOH HOH . G 4 HOH A 34 835 835 HOH HOH . G 4 HOH A 35 836 836 HOH HOH . G 4 HOH A 36 837 837 HOH HOH . G 4 HOH A 37 838 838 HOH HOH . H 4 HOH B 1 803 803 HOH HOH . H 4 HOH B 2 804 804 HOH HOH . H 4 HOH B 3 805 805 HOH HOH . H 4 HOH B 4 806 806 HOH HOH . H 4 HOH B 5 807 807 HOH HOH . H 4 HOH B 6 808 808 HOH HOH . H 4 HOH B 7 809 809 HOH HOH . H 4 HOH B 8 810 810 HOH HOH . H 4 HOH B 9 811 811 HOH HOH . H 4 HOH B 10 812 812 HOH HOH . H 4 HOH B 11 813 813 HOH HOH . H 4 HOH B 12 814 814 HOH HOH . H 4 HOH B 13 815 815 HOH HOH . H 4 HOH B 14 816 816 HOH HOH . H 4 HOH B 15 817 817 HOH HOH . H 4 HOH B 16 818 818 HOH HOH . H 4 HOH B 17 819 819 HOH HOH . H 4 HOH B 18 820 820 HOH HOH . H 4 HOH B 19 821 821 HOH HOH . H 4 HOH B 20 822 822 HOH HOH . H 4 HOH B 21 823 823 HOH HOH . H 4 HOH B 22 824 824 HOH HOH . H 4 HOH B 23 825 825 HOH HOH . H 4 HOH B 24 826 826 HOH HOH . H 4 HOH B 25 827 827 HOH HOH . H 4 HOH B 26 828 828 HOH HOH . H 4 HOH B 27 829 829 HOH HOH . H 4 HOH B 28 830 830 HOH HOH . H 4 HOH B 29 831 831 HOH HOH . H 4 HOH B 30 832 832 HOH HOH . H 4 HOH B 31 833 833 HOH HOH . H 4 HOH B 32 834 834 HOH HOH . H 4 HOH B 33 835 835 HOH HOH . H 4 HOH B 34 836 836 HOH HOH . H 4 HOH B 35 837 837 HOH HOH . H 4 HOH B 36 838 838 HOH HOH . H 4 HOH B 37 839 839 HOH HOH . H 4 HOH B 38 840 840 HOH HOH . H 4 HOH B 39 841 841 HOH HOH . H 4 HOH B 40 842 842 HOH HOH . H 4 HOH B 41 843 843 HOH HOH . H 4 HOH B 42 844 844 HOH HOH . H 4 HOH B 43 845 845 HOH HOH . H 4 HOH B 44 846 846 HOH HOH . H 4 HOH B 45 847 847 HOH HOH . H 4 HOH B 46 848 848 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAD . . . C 2 6.889 16.514 301.333 1 35.33 ? PA NAD 701 A 1 HETATM 2 O O1A NAD . . . C 2 5.75 15.411 301.103 1 38.07 ? O1A NAD 701 A 1 HETATM 3 O O2A NAD . . . C 2 8.203 16.02 300.579 1 37.79 ? O2A NAD 701 A 1 HETATM 4 O O5B NAD . . . C 2 7.202 16.61 302.907 1 36.25 ? O5B NAD 701 A 1 HETATM 5 C C5B NAD . . . C 2 6.174 16.991 303.644 1 36.5 ? C5B NAD 701 A 1 HETATM 6 C C4B NAD . . . C 2 6.389 16.563 305 1 38.67 ? C4B NAD 701 A 1 HETATM 7 O O4B NAD . . . C 2 5.434 16.88 305.898 1 37.29 ? O4B NAD 701 A 1 HETATM 8 C C3B NAD . . . C 2 6.549 15.134 305.122 1 39.57 ? C3B NAD 701 A 1 HETATM 9 O O3B NAD . . . C 2 7.798 14.835 305.371 1 39.54 ? O3B NAD 701 A 1 HETATM 10 C C2B NAD . . . C 2 5.642 14.825 306.131 1 39.53 ? C2B NAD 701 A 1 HETATM 11 O O2B NAD . . . C 2 5.846 13.713 306.782 1 43.42 ? O2B NAD 701 A 1 HETATM 12 C C1B NAD . . . C 2 5.639 16.005 306.889 1 37.09 ? C1B NAD 701 A 1 HETATM 13 N N9A NAD . . . C 2 4.614 15.991 307.825 1 34.51 ? N9A NAD 701 A 1 HETATM 14 C C8A NAD . . . C 2 3.262 16.106 307.574 1 32.93 ? C8A NAD 701 A 1 HETATM 15 N N7A NAD . . . C 2 2.55 16.043 308.75 1 31.47 ? N7A NAD 701 A 1 HETATM 16 C C5A NAD . . . C 2 3.482 15.89 309.725 1 28.49 ? C5A NAD 701 A 1 HETATM 17 C C6A NAD . . . C 2 3.318 15.763 311.11 1 25 ? C6A NAD 701 A 1 HETATM 18 N N6A NAD . . . C 2 2.096 15.798 311.68 1 19.81 ? N6A NAD 701 A 1 HETATM 19 N N1A NAD . . . C 2 4.454 15.612 311.876 1 23.73 ? N1A NAD 701 A 1 HETATM 20 C C2A NAD . . . C 2 5.721 15.575 311.305 1 25.77 ? C2A NAD 701 A 1 HETATM 21 N N3A NAD . . . C 2 5.873 15.699 309.938 1 27.83 ? N3A NAD 701 A 1 HETATM 22 C C4A NAD . . . C 2 4.748 15.844 309.171 1 31.04 ? C4A NAD 701 A 1 HETATM 23 O O3 NAD . . . C 2 6.343 17.86 300.581 1 36.98 ? O3 NAD 701 A 1 HETATM 24 P PN NAD . . . C 2 7.206 19.24 300.571 1 31.85 ? PN NAD 701 A 1 HETATM 25 O O1N NAD . . . C 2 6.927 19.958 299.179 1 33.47 ? O1N NAD 701 A 1 HETATM 26 O O2N NAD . . . C 2 8.782 18.959 300.694 1 32.33 ? O2N NAD 701 A 1 HETATM 27 O O5D NAD . . . C 2 6.591 20.249 301.672 1 33.34 ? O5D NAD 701 A 1 HETATM 28 C C5D NAD . . . C 2 7.444 20.69 302.554 1 35.92 ? C5D NAD 701 A 1 HETATM 29 C C4D NAD . . . C 2 7.259 22.093 302.875 1 36.5 ? C4D NAD 701 A 1 HETATM 30 O O4D NAD . . . C 2 7.52 22.863 301.783 1 35.89 ? O4D NAD 701 A 1 HETATM 31 C C3D NAD . . . C 2 5.92 22.499 303.315 1 36.15 ? C3D NAD 701 A 1 HETATM 32 O O3D NAD . . . C 2 5.942 23.413 304.26 1 34.97 ? O3D NAD 701 A 1 HETATM 33 C C2D NAD . . . C 2 5.387 22.955 302.104 1 36.62 ? C2D NAD 701 A 1 HETATM 34 O O2D NAD . . . C 2 4.239 23.589 302.121 1 35.48 ? O2D NAD 701 A 1 HETATM 35 C C1D NAD . . . C 2 6.503 23.681 301.642 1 35.2 ? C1D NAD 701 A 1 HETATM 36 N N1N NAD . . . C 2 6.392 24.201 300.362 1 33.76 ? N1N NAD 701 A 1 HETATM 37 C C2N NAD . . . C 2 6.306 23.341 299.263 1 32.42 ? C2N NAD 701 A 1 HETATM 38 C C3N NAD . . . C 2 6.199 23.852 297.938 1 30.12 ? C3N NAD 701 A 1 HETATM 39 C C7N NAD . . . C 2 6.108 22.964 296.824 1 29.99 ? C7N NAD 701 A 1 HETATM 40 O O7N NAD . . . C 2 6.004 23.438 295.614 1 28.8 ? O7N NAD 701 A 1 HETATM 41 N N7N NAD . . . C 2 6.112 21.62 296.997 1 26.98 ? N7N NAD 701 A 1 HETATM 42 C C4N NAD . . . C 2 6.191 25.268 297.716 1 31.2 ? C4N NAD 701 A 1 HETATM 43 C C5N NAD . . . C 2 6.284 26.116 298.865 1 32.58 ? C5N NAD 701 A 1 HETATM 44 C C6N NAD . . . C 2 6.387 25.566 300.177 1 33.05 ? C6N NAD 701 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 277 _model_server_stats.encode_time_ms 17 _model_server_stats.element_count 44 #