data_3PJJ # _model_server_result.job_id oD67IMDLFLgFmxcl6fxYLA _model_server_result.datetime_utc '2024-12-21 12:58:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3pjj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":302}' # _entry.id 3PJJ # _exptl.entry_id 3PJJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 240.213 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "1,1'-(oxydimethanediyl)dipyrrolidine-2,5-dione" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 107.19 _cell.angle_gamma 90 _cell.entry_id 3PJJ _cell.length_a 66.705 _cell.length_b 51.132 _cell.length_c 80.935 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3PJJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 131 A CYS 133 1_555 C C3 MZH . A MZH 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.823 ? metalc ? metalc1 A NE2 HIS 93 A HIS 95 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.952 ? metalc ? metalc2 A NE2 HIS 95 A HIS 97 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.097 ? metalc ? metalc3 A ND1 HIS 118 A HIS 120 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? metalc ? metalc4 B ZN ZN . A ZN 301 1_555 D O HOH . A HOH 448 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? # _chem_comp.formula 'C10 H12 N2 O5' _chem_comp.formula_weight 240.213 _chem_comp.id MZH _chem_comp.mon_nstd_flag . _chem_comp.name "1,1'-(oxydimethanediyl)dipyrrolidine-2,5-dione" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C4 MZH sing 237 n n N1 C1 MZH sing 238 n n C1 O1 MZH doub 239 n n C1 C2 MZH sing 240 n n O2 C6 MZH doub 241 n n C2 H2 MZH sing 242 n n N2 C10 MZH sing 243 n n C3 C2 MZH sing 244 n n C3 H3 MZH sing 245 n n C4 C3 MZH sing 246 n n O3 C4 MZH doub 247 n n C5 N1 MZH sing 248 n n C5 H5 MZH sing 249 n n C5 H5A MZH sing 250 n n O4 C5 MZH sing 251 n n C6 N2 MZH sing 252 n n C7 C6 MZH sing 253 n n C7 C8 MZH sing 254 n n C7 H7 MZH sing 255 n n C8 C9 MZH sing 256 n n C8 H8 MZH sing 257 n n C9 N2 MZH sing 258 n n C9 O5 MZH doub 259 n n C10 O4 MZH sing 260 n n C10 H10 MZH sing 261 n n C10 H10A MZH sing 262 n n C2 H9 MZH sing 263 n n C3 H101 MZH sing 264 n n C7 H11 MZH sing 265 n n C8 H12 MZH sing 266 n n # _atom_sites.entry_id 3PJJ _atom_sites.fract_transf_matrix[1][1] 0.014991 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004638 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019557 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012933 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 301 262 ZN ZN . C 3 MZH A 1 302 400 MZH MZH . D 4 HOH A 1 401 600 HOH HOH . D 4 HOH A 2 402 601 HOH HOH . D 4 HOH A 3 403 602 HOH HOH . D 4 HOH A 4 404 603 HOH HOH . D 4 HOH A 5 405 604 HOH HOH . D 4 HOH A 6 406 605 HOH HOH . D 4 HOH A 7 407 606 HOH HOH . D 4 HOH A 8 408 607 HOH HOH . D 4 HOH A 9 409 608 HOH HOH . D 4 HOH A 10 410 609 HOH HOH . D 4 HOH A 11 411 610 HOH HOH . D 4 HOH A 12 412 611 HOH HOH . D 4 HOH A 13 413 612 HOH HOH . D 4 HOH A 14 414 613 HOH HOH . D 4 HOH A 15 415 614 HOH HOH . D 4 HOH A 16 416 615 HOH HOH . D 4 HOH A 17 417 616 HOH HOH . D 4 HOH A 18 418 617 HOH HOH . D 4 HOH A 19 419 618 HOH HOH . D 4 HOH A 20 420 619 HOH HOH . D 4 HOH A 21 421 620 HOH HOH . D 4 HOH A 22 422 621 HOH HOH . D 4 HOH A 23 423 622 HOH HOH . D 4 HOH A 24 424 623 HOH HOH . D 4 HOH A 25 425 624 HOH HOH . D 4 HOH A 26 426 625 HOH HOH . D 4 HOH A 27 427 626 HOH HOH . D 4 HOH A 28 428 627 HOH HOH . D 4 HOH A 29 429 628 HOH HOH . D 4 HOH A 30 430 629 HOH HOH . D 4 HOH A 31 431 630 HOH HOH . D 4 HOH A 32 432 631 HOH HOH . D 4 HOH A 33 433 632 HOH HOH . D 4 HOH A 34 434 633 HOH HOH . D 4 HOH A 35 435 634 HOH HOH . D 4 HOH A 36 436 635 HOH HOH . D 4 HOH A 37 437 636 HOH HOH . D 4 HOH A 38 438 637 HOH HOH . D 4 HOH A 39 439 638 HOH HOH . D 4 HOH A 40 440 639 HOH HOH . D 4 HOH A 41 441 640 HOH HOH . D 4 HOH A 42 442 641 HOH HOH . D 4 HOH A 43 443 642 HOH HOH . D 4 HOH A 44 444 643 HOH HOH . D 4 HOH A 45 445 644 HOH HOH . D 4 HOH A 46 446 645 HOH HOH . D 4 HOH A 47 447 646 HOH HOH . D 4 HOH A 48 448 647 HOH HOH . D 4 HOH A 49 449 648 HOH HOH . D 4 HOH A 50 450 649 HOH HOH . D 4 HOH A 51 451 650 HOH HOH . D 4 HOH A 52 452 651 HOH HOH . D 4 HOH A 53 453 652 HOH HOH . D 4 HOH A 54 454 653 HOH HOH . D 4 HOH A 55 455 654 HOH HOH . D 4 HOH A 56 456 655 HOH HOH . D 4 HOH A 57 457 656 HOH HOH . D 4 HOH A 58 458 657 HOH HOH . D 4 HOH A 59 459 658 HOH HOH . D 4 HOH A 60 460 659 HOH HOH . D 4 HOH A 61 461 660 HOH HOH . D 4 HOH A 62 462 661 HOH HOH . D 4 HOH A 63 463 662 HOH HOH . D 4 HOH A 64 464 663 HOH HOH . D 4 HOH A 65 465 664 HOH HOH . D 4 HOH A 66 466 665 HOH HOH . D 4 HOH A 67 467 666 HOH HOH . D 4 HOH A 68 468 667 HOH HOH . D 4 HOH A 69 469 668 HOH HOH . D 4 HOH A 70 470 669 HOH HOH . D 4 HOH A 71 471 670 HOH HOH . D 4 HOH A 72 472 671 HOH HOH . D 4 HOH A 73 473 672 HOH HOH . D 4 HOH A 74 474 673 HOH HOH . D 4 HOH A 75 475 674 HOH HOH . D 4 HOH A 76 476 675 HOH HOH . D 4 HOH A 77 477 676 HOH HOH . D 4 HOH A 78 478 677 HOH HOH . D 4 HOH A 79 479 678 HOH HOH . D 4 HOH A 80 480 679 HOH HOH . D 4 HOH A 81 481 680 HOH HOH . D 4 HOH A 82 482 681 HOH HOH . D 4 HOH A 83 483 682 HOH HOH . D 4 HOH A 84 484 683 HOH HOH . D 4 HOH A 85 485 684 HOH HOH . D 4 HOH A 86 486 685 HOH HOH . D 4 HOH A 87 487 686 HOH HOH . D 4 HOH A 88 488 687 HOH HOH . D 4 HOH A 89 489 688 HOH HOH . D 4 HOH A 90 490 689 HOH HOH . D 4 HOH A 91 491 690 HOH HOH . D 4 HOH A 92 492 691 HOH HOH . D 4 HOH A 93 493 692 HOH HOH . D 4 HOH A 94 494 693 HOH HOH . D 4 HOH A 95 495 694 HOH HOH . D 4 HOH A 96 496 695 HOH HOH . D 4 HOH A 97 497 696 HOH HOH . D 4 HOH A 98 498 697 HOH HOH . D 4 HOH A 99 499 698 HOH HOH . D 4 HOH A 100 500 699 HOH HOH . D 4 HOH A 101 501 700 HOH HOH . D 4 HOH A 102 502 701 HOH HOH . D 4 HOH A 103 503 702 HOH HOH . D 4 HOH A 104 504 703 HOH HOH . D 4 HOH A 105 505 704 HOH HOH . D 4 HOH A 106 506 705 HOH HOH . D 4 HOH A 107 507 706 HOH HOH . D 4 HOH A 108 508 707 HOH HOH . D 4 HOH A 109 509 708 HOH HOH . D 4 HOH A 110 510 709 HOH HOH . D 4 HOH A 111 511 710 HOH HOH . D 4 HOH A 112 512 711 HOH HOH . D 4 HOH A 113 513 712 HOH HOH . D 4 HOH A 114 514 713 HOH HOH . D 4 HOH A 115 515 714 HOH HOH . D 4 HOH A 116 516 715 HOH HOH . D 4 HOH A 117 517 716 HOH HOH . D 4 HOH A 118 518 717 HOH HOH . D 4 HOH A 119 519 718 HOH HOH . D 4 HOH A 120 520 719 HOH HOH . D 4 HOH A 121 521 720 HOH HOH . D 4 HOH A 122 522 721 HOH HOH . D 4 HOH A 123 523 722 HOH HOH . D 4 HOH A 124 524 723 HOH HOH . D 4 HOH A 125 525 724 HOH HOH . D 4 HOH A 126 526 725 HOH HOH . D 4 HOH A 127 527 726 HOH HOH . D 4 HOH A 128 528 727 HOH HOH . D 4 HOH A 129 529 728 HOH HOH . D 4 HOH A 130 530 729 HOH HOH . D 4 HOH A 131 531 730 HOH HOH . D 4 HOH A 132 532 731 HOH HOH . D 4 HOH A 133 533 732 HOH HOH . D 4 HOH A 134 534 733 HOH HOH . D 4 HOH A 135 535 734 HOH HOH . D 4 HOH A 136 536 735 HOH HOH . D 4 HOH A 137 537 736 HOH HOH . D 4 HOH A 138 538 737 HOH HOH . D 4 HOH A 139 539 738 HOH HOH . D 4 HOH A 140 540 739 HOH HOH . D 4 HOH A 141 541 740 HOH HOH . D 4 HOH A 142 542 741 HOH HOH . D 4 HOH A 143 543 742 HOH HOH . D 4 HOH A 144 544 743 HOH HOH . D 4 HOH A 145 545 744 HOH HOH . D 4 HOH A 146 546 745 HOH HOH . D 4 HOH A 147 547 746 HOH HOH . D 4 HOH A 148 548 747 HOH HOH . D 4 HOH A 149 549 748 HOH HOH . D 4 HOH A 150 550 749 HOH HOH . D 4 HOH A 151 551 750 HOH HOH . D 4 HOH A 152 552 751 HOH HOH . D 4 HOH A 153 553 752 HOH HOH . D 4 HOH A 154 554 753 HOH HOH . D 4 HOH A 155 555 754 HOH HOH . D 4 HOH A 156 556 755 HOH HOH . D 4 HOH A 157 557 756 HOH HOH . D 4 HOH A 158 558 757 HOH HOH . D 4 HOH A 159 559 758 HOH HOH . D 4 HOH A 160 560 759 HOH HOH . D 4 HOH A 161 561 760 HOH HOH . D 4 HOH A 162 562 761 HOH HOH . D 4 HOH A 163 563 762 HOH HOH . D 4 HOH A 164 564 763 HOH HOH . D 4 HOH A 165 565 764 HOH HOH . D 4 HOH A 166 566 765 HOH HOH . D 4 HOH A 167 567 766 HOH HOH . D 4 HOH A 168 568 767 HOH HOH . D 4 HOH A 169 569 768 HOH HOH . D 4 HOH A 170 570 769 HOH HOH . D 4 HOH A 171 571 770 HOH HOH . D 4 HOH A 172 572 771 HOH HOH . D 4 HOH A 173 573 772 HOH HOH . D 4 HOH A 174 574 773 HOH HOH . D 4 HOH A 175 575 774 HOH HOH . D 4 HOH A 176 576 775 HOH HOH . D 4 HOH A 177 577 776 HOH HOH . D 4 HOH A 178 578 777 HOH HOH . D 4 HOH A 179 579 778 HOH HOH . D 4 HOH A 180 580 779 HOH HOH . D 4 HOH A 181 581 780 HOH HOH . D 4 HOH A 182 582 781 HOH HOH . D 4 HOH A 183 583 782 HOH HOH . D 4 HOH A 184 584 783 HOH HOH . D 4 HOH A 185 585 784 HOH HOH . D 4 HOH A 186 586 785 HOH HOH . D 4 HOH A 187 587 786 HOH HOH . D 4 HOH A 188 588 787 HOH HOH . D 4 HOH A 189 589 788 HOH HOH . D 4 HOH A 190 590 789 HOH HOH . D 4 HOH A 191 591 790 HOH HOH . D 4 HOH A 192 592 792 HOH HOH . D 4 HOH A 193 593 793 HOH HOH . D 4 HOH A 194 594 794 HOH HOH . D 4 HOH A 195 595 795 HOH HOH . D 4 HOH A 196 596 796 HOH HOH . D 4 HOH A 197 597 797 HOH HOH . D 4 HOH A 198 598 798 HOH HOH . D 4 HOH A 199 599 799 HOH HOH . D 4 HOH A 200 600 800 HOH HOH . D 4 HOH A 201 601 801 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 MZH . . . C 3 19.807 -0.73 40.604 1 62.09 ? N1 MZH 302 A 1 HETATM 2 C C1 MZH . . . C 3 19.268 -1.07 41.782 1 63.72 ? C1 MZH 302 A 1 HETATM 3 O O1 MZH . . . C 3 19.795 -1.795 42.619 1 67.51 ? O1 MZH 302 A 1 HETATM 4 C C2 MZH . . . C 3 17.891 -0.453 41.984 1 59.08 ? C2 MZH 302 A 1 HETATM 5 C C3 MZH . . . C 3 17.799 0.524 40.824 1 54.65 ? C3 MZH 302 A 1 HETATM 6 C C4 MZH . . . C 3 19.111 0.302 40.087 1 59.73 ? C4 MZH 302 A 1 HETATM 7 O O3 MZH . . . C 3 19.421 1.011 39.134 1 59.57 ? O3 MZH 302 A 1 HETATM 8 C C5 MZH . . . C 3 20.94 -1.438 39.995 1 52.51 ? C5 MZH 302 A 1 HETATM 9 O O4 MZH . . . C 3 21.247 -1.884 38.63 0.5 61.32 ? O4 MZH 302 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 251 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 9 #