data_3PJX # _model_server_result.job_id qVXEB3hS-xXbBMRbpPX1Zw _model_server_result.datetime_utc '2025-01-22 01:49:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3pjx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1}' # _entry.id 3PJX # _exptl.entry_id 3PJX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 9 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3PJX _cell.length_a 52.147 _cell.length_b 52.147 _cell.length_c 146.33 _cell.Z_PDB 3 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3PJX _symmetry.cell_setting ? _symmetry.Int_Tables_number 145 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N ? 2 I N N ? 2 J N N # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 3PJX _atom_sites.fract_transf_matrix[1][1] 0.019177 _atom_sites.fract_transf_matrix[1][2] 0.011072 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.022143 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006834 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EDO A 1 1 1 EDO EDO . C 2 EDO A 1 649 1 EDO EDO . D 2 EDO A 1 650 1 EDO EDO . E 2 EDO A 1 2 2 EDO EDO . F 2 EDO A 1 3 3 EDO EDO . G 2 EDO A 1 4 4 EDO EDO . H 2 EDO A 1 5 5 EDO EDO . I 2 EDO A 1 6 6 EDO EDO . J 2 EDO A 1 651 1 EDO EDO . K 3 HOH A 1 7 7 HOH HOH . K 3 HOH A 2 8 8 HOH HOH . K 3 HOH A 3 9 9 HOH HOH . K 3 HOH A 4 10 10 HOH HOH . K 3 HOH A 5 11 11 HOH HOH . K 3 HOH A 6 12 12 HOH HOH . K 3 HOH A 7 13 13 HOH HOH . K 3 HOH A 8 14 14 HOH HOH . K 3 HOH A 9 15 15 HOH HOH . K 3 HOH A 10 16 16 HOH HOH . K 3 HOH A 11 17 17 HOH HOH . K 3 HOH A 12 18 18 HOH HOH . K 3 HOH A 13 19 19 HOH HOH . K 3 HOH A 14 20 20 HOH HOH . K 3 HOH A 15 21 21 HOH HOH . K 3 HOH A 16 22 22 HOH HOH . K 3 HOH A 17 23 23 HOH HOH . K 3 HOH A 18 24 24 HOH HOH . K 3 HOH A 19 25 25 HOH HOH . K 3 HOH A 20 26 26 HOH HOH . K 3 HOH A 21 27 27 HOH HOH . K 3 HOH A 22 28 28 HOH HOH . K 3 HOH A 23 29 29 HOH HOH . K 3 HOH A 24 30 30 HOH HOH . K 3 HOH A 25 31 31 HOH HOH . K 3 HOH A 26 32 32 HOH HOH . K 3 HOH A 27 33 33 HOH HOH . K 3 HOH A 28 34 34 HOH HOH . K 3 HOH A 29 35 35 HOH HOH . K 3 HOH A 30 36 36 HOH HOH . K 3 HOH A 31 37 37 HOH HOH . K 3 HOH A 32 38 38 HOH HOH . K 3 HOH A 33 39 39 HOH HOH . K 3 HOH A 34 40 40 HOH HOH . K 3 HOH A 35 41 41 HOH HOH . K 3 HOH A 36 42 42 HOH HOH . K 3 HOH A 37 43 43 HOH HOH . K 3 HOH A 38 44 44 HOH HOH . K 3 HOH A 39 45 45 HOH HOH . K 3 HOH A 40 46 46 HOH HOH . K 3 HOH A 41 47 47 HOH HOH . K 3 HOH A 42 48 48 HOH HOH . K 3 HOH A 43 49 49 HOH HOH . K 3 HOH A 44 50 50 HOH HOH . K 3 HOH A 45 51 51 HOH HOH . K 3 HOH A 46 52 52 HOH HOH . K 3 HOH A 47 53 53 HOH HOH . K 3 HOH A 48 54 54 HOH HOH . K 3 HOH A 49 55 55 HOH HOH . K 3 HOH A 50 56 56 HOH HOH . K 3 HOH A 51 57 57 HOH HOH . K 3 HOH A 52 58 58 HOH HOH . K 3 HOH A 53 59 59 HOH HOH . K 3 HOH A 54 60 60 HOH HOH . K 3 HOH A 55 61 61 HOH HOH . K 3 HOH A 56 62 62 HOH HOH . K 3 HOH A 57 63 63 HOH HOH . K 3 HOH A 58 64 64 HOH HOH . K 3 HOH A 59 65 65 HOH HOH . K 3 HOH A 60 66 66 HOH HOH . K 3 HOH A 61 67 67 HOH HOH . K 3 HOH A 62 68 68 HOH HOH . K 3 HOH A 63 69 69 HOH HOH . K 3 HOH A 64 70 70 HOH HOH . K 3 HOH A 65 71 71 HOH HOH . K 3 HOH A 66 72 72 HOH HOH . K 3 HOH A 67 73 73 HOH HOH . K 3 HOH A 68 74 74 HOH HOH . K 3 HOH A 69 75 75 HOH HOH . K 3 HOH A 70 76 76 HOH HOH . K 3 HOH A 71 77 77 HOH HOH . K 3 HOH A 72 78 78 HOH HOH . K 3 HOH A 73 79 79 HOH HOH . K 3 HOH A 74 80 80 HOH HOH . K 3 HOH A 75 81 81 HOH HOH . K 3 HOH A 76 82 82 HOH HOH . K 3 HOH A 77 83 83 HOH HOH . K 3 HOH A 78 84 84 HOH HOH . K 3 HOH A 79 85 85 HOH HOH . K 3 HOH A 80 86 86 HOH HOH . K 3 HOH A 81 87 87 HOH HOH . K 3 HOH A 82 88 88 HOH HOH . K 3 HOH A 83 89 89 HOH HOH . K 3 HOH A 84 90 90 HOH HOH . K 3 HOH A 85 91 91 HOH HOH . K 3 HOH A 86 92 92 HOH HOH . K 3 HOH A 87 93 93 HOH HOH . K 3 HOH A 88 94 94 HOH HOH . K 3 HOH A 89 95 95 HOH HOH . K 3 HOH A 90 96 96 HOH HOH . K 3 HOH A 91 97 97 HOH HOH . K 3 HOH A 92 98 98 HOH HOH . K 3 HOH A 93 99 99 HOH HOH . K 3 HOH A 94 100 100 HOH HOH . K 3 HOH A 95 101 101 HOH HOH . K 3 HOH A 96 102 102 HOH HOH . K 3 HOH A 97 103 103 HOH HOH . K 3 HOH A 98 104 104 HOH HOH . K 3 HOH A 99 105 105 HOH HOH . K 3 HOH A 100 106 106 HOH HOH . K 3 HOH A 101 107 107 HOH HOH . K 3 HOH A 102 108 108 HOH HOH . K 3 HOH A 103 109 109 HOH HOH . K 3 HOH A 104 110 110 HOH HOH . K 3 HOH A 105 111 111 HOH HOH . K 3 HOH A 106 112 112 HOH HOH . K 3 HOH A 107 113 113 HOH HOH . K 3 HOH A 108 114 114 HOH HOH . K 3 HOH A 109 115 115 HOH HOH . K 3 HOH A 110 116 116 HOH HOH . K 3 HOH A 111 117 117 HOH HOH . K 3 HOH A 112 118 118 HOH HOH . K 3 HOH A 113 119 119 HOH HOH . K 3 HOH A 114 120 120 HOH HOH . K 3 HOH A 115 122 122 HOH HOH . K 3 HOH A 116 123 123 HOH HOH . K 3 HOH A 117 124 124 HOH HOH . K 3 HOH A 118 125 125 HOH HOH . K 3 HOH A 119 126 126 HOH HOH . K 3 HOH A 120 127 127 HOH HOH . K 3 HOH A 121 128 128 HOH HOH . K 3 HOH A 122 129 129 HOH HOH . K 3 HOH A 123 130 130 HOH HOH . K 3 HOH A 124 131 131 HOH HOH . K 3 HOH A 125 132 132 HOH HOH . K 3 HOH A 126 133 133 HOH HOH . K 3 HOH A 127 134 134 HOH HOH . K 3 HOH A 128 135 135 HOH HOH . K 3 HOH A 129 136 136 HOH HOH . K 3 HOH A 130 137 137 HOH HOH . K 3 HOH A 131 138 138 HOH HOH . K 3 HOH A 132 139 139 HOH HOH . K 3 HOH A 133 140 140 HOH HOH . K 3 HOH A 134 141 141 HOH HOH . K 3 HOH A 135 142 142 HOH HOH . K 3 HOH A 136 143 143 HOH HOH . K 3 HOH A 137 144 144 HOH HOH . K 3 HOH A 138 145 145 HOH HOH . K 3 HOH A 139 146 146 HOH HOH . K 3 HOH A 140 147 147 HOH HOH . K 3 HOH A 141 148 148 HOH HOH . K 3 HOH A 142 149 149 HOH HOH . K 3 HOH A 143 150 150 HOH HOH . K 3 HOH A 144 151 151 HOH HOH . K 3 HOH A 145 152 152 HOH HOH . K 3 HOH A 146 153 153 HOH HOH . K 3 HOH A 147 154 154 HOH HOH . K 3 HOH A 148 652 1 HOH HOH . K 3 HOH A 149 653 2 HOH HOH . K 3 HOH A 150 654 3 HOH HOH . K 3 HOH A 151 655 4 HOH HOH . K 3 HOH A 152 656 5 HOH HOH . K 3 HOH A 153 657 6 HOH HOH . K 3 HOH A 154 658 2 HOH HOH . K 3 HOH A 155 659 3 HOH HOH . K 3 HOH A 156 660 4 HOH HOH . K 3 HOH A 157 661 5 HOH HOH . K 3 HOH A 158 662 7 HOH HOH . K 3 HOH A 159 663 9 HOH HOH . K 3 HOH A 160 664 10 HOH HOH . K 3 HOH A 161 665 11 HOH HOH . K 3 HOH A 162 666 12 HOH HOH . K 3 HOH A 163 667 15 HOH HOH . K 3 HOH A 164 668 19 HOH HOH . K 3 HOH A 165 669 20 HOH HOH . K 3 HOH A 166 670 22 HOH HOH . K 3 HOH A 167 671 23 HOH HOH . K 3 HOH A 168 672 27 HOH HOH . K 3 HOH A 169 673 28 HOH HOH . K 3 HOH A 170 674 29 HOH HOH . K 3 HOH A 171 675 30 HOH HOH . K 3 HOH A 172 676 32 HOH HOH . K 3 HOH A 173 677 33 HOH HOH . K 3 HOH A 174 678 35 HOH HOH . K 3 HOH A 175 679 36 HOH HOH . K 3 HOH A 176 680 42 HOH HOH . K 3 HOH A 177 681 50 HOH HOH . K 3 HOH A 178 682 51 HOH HOH . K 3 HOH A 179 683 54 HOH HOH . K 3 HOH A 180 684 68 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . B 2 -12.239 15.708 7.782 1 69.63 ? C1 EDO 1 A 1 HETATM 2 O O1 EDO . . . B 2 -11.934 16.117 9.13 1 74.12 ? O1 EDO 1 A 1 HETATM 3 C C2 EDO . . . B 2 -10.947 15.256 7.148 1 66.27 ? C2 EDO 1 A 1 HETATM 4 O O2 EDO . . . B 2 -11.288 14.747 5.857 1 63.94 ? O2 EDO 1 A 1 # _model_server_stats.io_time_ms 29 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 293 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 4 #