data_3PK2 # _model_server_result.job_id dW9Nj6VekzvjKfmaJHrfYA _model_server_result.datetime_utc '2024-11-23 18:12:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3pk2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":400}' # _entry.id 3PK2 # _exptl.entry_id 3PK2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 807.488 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description {N-(4-{[2-(amino-kappaN)ethyl]sulfamoyl-kappaN}phenyl)-5-[(3aS,4S,6aR)-2-oxohexahydro-1H-thieno[3,4-d]imidazol-4-yl]pentanamide}(chloro)[(1,2,3,4,5-eta)-1,2,3,4,5-pentamethylcyclopentadienyl]iridium(III) _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3PK2 _cell.length_a 57.616 _cell.length_b 57.616 _cell.length_c 184.031 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3PK2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 98 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 41 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_665 -y+1,-x+1,-z 0 -1 0 -1 0 0 0 0 -1 57.616 57.616 0 3 'crystal symmetry operation' 10_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 57.616 57.616 0 4 'crystal symmetry operation' 15_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 87 A HIS 87 1_555 C IR IR3 . A IR3 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.221 ? metalc ? metalc2 C IR IR3 . A IR3 500 1_555 E O HOH . A HOH 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? metalc ? metalc3 C IR IR3 . A IR3 500 1_555 E O HOH . A HOH 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? metalc ? metalc4 C IR IR3 . A IR3 500 1_555 E O HOH . A HOH 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? metalc ? metalc5 C IR IR3 . A IR3 500 1_555 E O HOH . A HOH 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? metalc ? metalc6 C IR IR3 . A IR3 500 1_555 E O HOH . A HOH 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.079 ? # _chem_comp.formula 'C28 H45 Cl Ir N5 O4 S2 2' _chem_comp.formula_weight 807.488 _chem_comp.id 4IR _chem_comp.mon_nstd_flag . _chem_comp.name {N-(4-{[2-(amino-kappaN)ethyl]sulfamoyl-kappaN}phenyl)-5-[(3aS,4S,6aR)-2-oxohexahydro-1H-thieno[3,4-d]imidazol-4-yl]pentanamide}(chloro)[(1,2,3,4,5-eta)-1,2,3,4,5-pentamethylcyclopentadienyl]iridium(III) _chem_comp.type non-polymer _chem_comp.pdbx_synonyms N-(4-{[(2-AMINOETHYL)AMINO]SULFONYL}PHENYL)-5-[(3AS,4S,6AR)-2-OXOHEXAHYDRO-1H-THIENO[3,4-D]IMIDAZOL-4-YL]PENTANAMIDE-(1,2,3,4,5,6-ETA)-PENTAMETHYLCYCLOHEXYL-CHLORO-IRIDIUM(III) # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 N1 4IR sing 1 n n C1 O1 4IR doub 2 n n C1 N2 4IR sing 3 n n N1 C2 4IR sing 4 n n N1 HN1 4IR sing 5 n n S1 C3 4IR sing 6 n n S1 C5 4IR sing 7 n n C2 C3 4IR sing 8 n n C2 C4 4IR sing 9 n n C2 H2 4IR sing 10 n n N2 C4 4IR sing 11 n n N2 HN2 4IR sing 12 n n O2 C10 4IR doub 13 n n S2 O3 4IR doub 14 n n S2 N4 4IR sing 15 n n S2 O4 4IR doub 16 n n S2 C16 4IR sing 17 n n C3 H3 4IR sing 18 n n C3 H3A 4IR sing 19 n n N3 C10 4IR sing 20 n n N3 C11 4IR sing 21 n n N3 HN3 4IR sing 22 n n C4 C5 4IR sing 23 n n C4 H4 4IR sing 24 n n N4 C27 4IR sing 25 n n N4 HN4 4IR sing 26 n n C5 C6 4IR sing 27 n n C5 H5 4IR sing 28 n n N5 C28 4IR sing 29 n n N5 HN5 4IR sing 30 n n N5 HN5A 4IR sing 31 n n C6 C7 4IR sing 32 n n C6 H6 4IR sing 33 n n C6 H6A 4IR sing 34 n n C7 C8 4IR sing 35 n n C7 H7 4IR sing 36 n n C7 H7A 4IR sing 37 n n C8 C9 4IR sing 38 n n C8 H8 4IR sing 39 n n C8 H8A 4IR sing 40 n n C9 C10 4IR sing 41 n n C9 H9 4IR sing 42 n n C9 H9A 4IR sing 43 n n C11 C12 4IR doub 44 n y C11 C14 4IR sing 45 n y C12 C13 4IR sing 46 n y C12 H12 4IR sing 47 n n C13 C16 4IR doub 48 n y C13 H13 4IR sing 49 n n C14 C15 4IR doub 50 n y C14 H14 4IR sing 51 n n C15 C16 4IR sing 52 n y C15 H15 4IR sing 53 n n C17 C18 4IR sing 54 n n C17 C21 4IR doub 55 n n C17 C22 4IR sing 56 n n C18 C19 4IR sing 57 n n C18 C23 4IR sing 58 n n C18 H18 4IR sing 59 n n C19 C20 4IR sing 60 n n C19 C24 4IR sing 61 n n C19 H19 4IR sing 62 n n C20 C21 4IR sing 63 n n C20 C25 4IR sing 64 n n C20 H20 4IR sing 65 n n C21 C26 4IR sing 66 n n C22 H22 4IR sing 67 n n C22 H22A 4IR sing 68 n n C22 H22B 4IR sing 69 n n C23 H23 4IR sing 70 n n C23 H23A 4IR sing 71 n n C23 H23B 4IR sing 72 n n C24 H24 4IR sing 73 n n C24 H24A 4IR sing 74 n n C24 H24B 4IR sing 75 n n C25 H25 4IR sing 76 n n C25 H25A 4IR sing 77 n n C25 H25B 4IR sing 78 n n C26 H26 4IR sing 79 n n C26 H26A 4IR sing 80 n n C26 H26B 4IR sing 81 n n C27 C28 4IR sing 82 n n C27 H27 4IR sing 83 n n C27 H27A 4IR sing 84 n n C28 H28 4IR sing 85 n n C28 H28A 4IR sing 86 n n IR1 CL1 4IR sing 87 n n IR1 N4 4IR sing 88 n n IR1 N5 4IR sing 89 n n IR1 C21 4IR sing 90 n n IR1 C17 4IR sing 91 n n IR1 C18 4IR sing 92 n n IR1 C19 4IR sing 93 n n IR1 C20 4IR sing 94 n n # _atom_sites.entry_id 3PK2 _atom_sites.fract_transf_matrix[1][1] 0.017356 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017356 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005434 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 4IR A 1 400 400 4IR BIR . C 3 IR3 A 1 500 500 IR3 BI1 . D 3 IR3 A 1 601 501 IR3 BI2 . E 4 HOH A 1 501 500 HOH BI1 . E 4 HOH A 2 502 500 HOH BI1 . E 4 HOH A 3 503 500 HOH BI1 . E 4 HOH A 4 504 500 HOH BI1 . E 4 HOH A 5 505 500 HOH BI1 . E 4 HOH A 6 506 1 HOH HOH . E 4 HOH A 7 507 2 HOH HOH . E 4 HOH A 8 508 3 HOH HOH . E 4 HOH A 9 509 4 HOH HOH . E 4 HOH A 10 510 5 HOH HOH . E 4 HOH A 11 511 6 HOH HOH . E 4 HOH A 12 512 7 HOH HOH . E 4 HOH A 13 513 8 HOH HOH . E 4 HOH A 14 514 9 HOH HOH . E 4 HOH A 15 515 10 HOH HOH . E 4 HOH A 16 516 11 HOH HOH . E 4 HOH A 17 517 12 HOH HOH . E 4 HOH A 18 518 13 HOH HOH . E 4 HOH A 19 519 14 HOH HOH . E 4 HOH A 20 520 15 HOH HOH . E 4 HOH A 21 521 16 HOH HOH . E 4 HOH A 22 522 17 HOH HOH . E 4 HOH A 23 523 18 HOH HOH . E 4 HOH A 24 524 19 HOH HOH . E 4 HOH A 25 525 20 HOH HOH . E 4 HOH A 26 526 21 HOH HOH . E 4 HOH A 27 527 22 HOH HOH . E 4 HOH A 28 528 23 HOH HOH . E 4 HOH A 29 529 24 HOH HOH . E 4 HOH A 30 530 25 HOH HOH . E 4 HOH A 31 531 26 HOH HOH . E 4 HOH A 32 532 27 HOH HOH . E 4 HOH A 33 533 28 HOH HOH . E 4 HOH A 34 534 29 HOH HOH . E 4 HOH A 35 535 30 HOH HOH . E 4 HOH A 36 536 31 HOH HOH . E 4 HOH A 37 537 32 HOH HOH . E 4 HOH A 38 538 33 HOH HOH . E 4 HOH A 39 539 34 HOH HOH . E 4 HOH A 40 540 35 HOH HOH . E 4 HOH A 41 541 36 HOH HOH . E 4 HOH A 42 542 37 HOH HOH . E 4 HOH A 43 543 38 HOH HOH . E 4 HOH A 44 544 39 HOH HOH . E 4 HOH A 45 545 40 HOH HOH . E 4 HOH A 46 546 41 HOH HOH . E 4 HOH A 47 547 42 HOH HOH . E 4 HOH A 48 548 43 HOH HOH . E 4 HOH A 49 549 44 HOH HOH . E 4 HOH A 50 550 47 HOH HOH . E 4 HOH A 51 551 48 HOH HOH . E 4 HOH A 52 552 50 HOH HOH . E 4 HOH A 53 553 52 HOH HOH . E 4 HOH A 54 554 53 HOH HOH . E 4 HOH A 55 555 54 HOH HOH . E 4 HOH A 56 556 56 HOH HOH . E 4 HOH A 57 557 57 HOH HOH . E 4 HOH A 58 558 60 HOH HOH . E 4 HOH A 59 559 61 HOH HOH . E 4 HOH A 60 560 62 HOH HOH . E 4 HOH A 61 561 63 HOH HOH . E 4 HOH A 62 562 64 HOH HOH . E 4 HOH A 63 563 65 HOH HOH . E 4 HOH A 64 564 67 HOH HOH . E 4 HOH A 65 565 68 HOH HOH . E 4 HOH A 66 566 69 HOH HOH . E 4 HOH A 67 567 70 HOH HOH . E 4 HOH A 68 568 71 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 CL CL1 4IR . . . B 2 28.212 28.364 -16.481 0.5 32.83 ? CL1 4IR 400 A 1 HETATM 2 IR IR1 4IR . . . B 2 28.79 26.237 -16.141 0.5 32.11 ? IR1 4IR 400 A 1 HETATM 3 C C1 4IR . . . B 2 15.414 29.475 -8.493 1 10.43 ? C1 4IR 400 A 1 HETATM 4 N N1 4IR . . . B 2 16.445 29.465 -7.502 1 10.72 ? N1 4IR 400 A 1 HETATM 5 O O1 4IR . . . B 2 14.036 29.399 -8.185 1 13.95 ? O1 4IR 400 A 1 HETATM 6 S S1 4IR . . . B 2 17.814 26.752 -8.597 1 10.99 ? S1 4IR 400 A 1 HETATM 7 C C2 4IR . . . B 2 17.711 29.327 -8.186 1 10.3 ? C2 4IR 400 A 1 HETATM 8 N N2 4IR . . . B 2 15.972 29.17 -9.778 1 10.3 ? N2 4IR 400 A 1 HETATM 9 O O2 4IR . . . B 2 19.682 26.065 -15.036 1 13.03 ? O2 4IR 400 A 1 HETATM 10 S S2 4IR . . . B 2 25.959 26.686 -15.459 1 33.78 ? S2 4IR 400 A 1 HETATM 11 C C3 4IR . . . B 2 18.417 28.103 -7.641 1 9.87 ? C3 4IR 400 A 1 HETATM 12 N N3 4IR . . . B 2 20.948 24.146 -14.127 1 16.38 ? N3 4IR 400 A 1 HETATM 13 O O3 4IR . . . B 2 26.136 26.566 -16.931 1 33.15 ? O3 4IR 400 A 1 HETATM 14 C C4 4IR . . . B 2 17.417 29.102 -9.675 1 9.4 ? C4 4IR 400 A 1 HETATM 15 N N4 4IR . . . B 2 27.181 25.993 -14.704 1 31.69 ? N4 4IR 400 A 1 HETATM 16 O O4 4IR . . . B 2 25.871 28.122 -15.075 1 31.73 ? O4 4IR 400 A 1 HETATM 17 C C5 4IR . . . B 2 17.988 27.74 -10.068 1 10.45 ? C5 4IR 400 A 1 HETATM 18 N N5 4IR . . . B 2 29.786 26.616 -14.227 0.5 31.55 ? N5 4IR 400 A 1 HETATM 19 C C6 4IR . . . B 2 17.32 27.081 -11.283 1 11.54 ? C6 4IR 400 A 1 HETATM 20 C C7 4IR . . . B 2 18.183 25.992 -11.925 1 11.46 ? C7 4IR 400 A 1 HETATM 21 C C8 4IR . . . B 2 17.514 25.357 -13.147 1 12.33 ? C8 4IR 400 A 1 HETATM 22 C C9 4IR . . . B 2 18.378 24.282 -13.81 1 12.72 ? C9 4IR 400 A 1 HETATM 23 C C10 4IR . . . B 2 19.713 24.89 -14.223 1 13.43 ? C10 4IR 400 A 1 HETATM 24 C C11 4IR . . . B 2 22.141 24.703 -14.461 1 20.71 ? C11 4IR 400 A 1 HETATM 25 C C12 4IR . . . B 2 22.349 26.05 -14.187 1 22.91 ? C12 4IR 400 A 1 HETATM 26 C C13 4IR . . . B 2 23.558 26.657 -14.506 1 25.72 ? C13 4IR 400 A 1 HETATM 27 C C14 4IR . . . B 2 23.162 23.951 -15.055 1 23.42 ? C14 4IR 400 A 1 HETATM 28 C C15 4IR . . . B 2 24.388 24.563 -15.374 1 26.35 ? C15 4IR 400 A 1 HETATM 29 C C16 4IR . . . B 2 24.588 25.926 -15.09 1 28.01 ? C16 4IR 400 A 1 HETATM 30 C C17 4IR . . . B 2 30.484 26.229 -17.399 0.5 32.28 ? C17 4IR 400 A 1 HETATM 31 C C18 4IR . . . B 2 30.327 24.913 -16.707 0.5 32.08 ? C18 4IR 400 A 1 HETATM 32 C C19 4IR . . . B 2 28.986 24.355 -17.062 0.5 32.1 ? C19 4IR 400 A 1 HETATM 33 C C20 4IR . . . B 2 28.32 25.323 -17.98 0.5 32.06 ? C20 4IR 400 A 1 HETATM 34 C C21 4IR . . . B 2 29.247 26.479 -18.186 0.5 32.32 ? C21 4IR 400 A 1 HETATM 35 C C22 4IR . . . B 2 31.674 27.172 -17.284 0.5 32.52 ? C22 4IR 400 A 1 HETATM 36 C C23 4IR . . . B 2 31.325 24.273 -15.752 0.5 32.02 ? C23 4IR 400 A 1 HETATM 37 C C24 4IR . . . B 2 28.387 23.058 -16.535 0.5 32.11 ? C24 4IR 400 A 1 HETATM 38 C C25 4IR . . . B 2 26.913 25.191 -18.547 0.5 32.76 ? C25 4IR 400 A 1 HETATM 39 C C26 4IR . . . B 2 28.951 27.729 -19.004 0.5 32.79 ? C26 4IR 400 A 1 HETATM 40 C C27 4IR . . . B 2 27.452 26.622 -13.388 0.5 32.08 ? C27 4IR 400 A 1 HETATM 41 C C28 4IR . . . B 2 28.936 26.839 -13.08 0.5 31.63 ? C28 4IR 400 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 25 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 287 _model_server_stats.encode_time_ms 12 _model_server_stats.element_count 41 #