data_3PK2
#
_model_server_result.job_id            EBVq8MPRmv3Ib7Ip3Mcq4w 
_model_server_result.datetime_utc      '2025-02-17 11:16:17' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3pk2 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":601}' 
#
_entry.id    3PK2 
#
_exptl.entry_id    3PK2 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              192.217 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'IRIDIUM (III) ION' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3PK2 
_cell.length_a            57.616 
_cell.length_b            57.616 
_cell.length_c            184.031 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3PK2 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        98 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 41 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2,3,4 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 8_665 -y+1,-x+1,-z 0 -1 0 -1 0 0 0 0 -1 57.616 57.616 0 
3 'crystal symmetry operation' 10_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 57.616 57.616 0 
4 'crystal symmetry operation' 15_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 D N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 87 A HIS 87 1_555 C IR IR3 . A IR3 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.221 ? 
metalc ? metalc2 C IR IR3 . A IR3 500 1_555 E O HOH . A HOH 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? 
metalc ? metalc3 C IR IR3 . A IR3 500 1_555 E O HOH . A HOH 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? 
metalc ? metalc4 C IR IR3 . A IR3 500 1_555 E O HOH . A HOH 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? 
metalc ? metalc5 C IR IR3 . A IR3 500 1_555 E O HOH . A HOH 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? 
metalc ? metalc6 C IR IR3 . A IR3 500 1_555 E O HOH . A HOH 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.079 ? 
#
_chem_comp.formula           'Ir 3' 
_chem_comp.formula_weight    192.217 
_chem_comp.id                IR3 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'IRIDIUM (III) ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     3PK2 
_atom_sites.fract_transf_matrix[1][1]    0.017356 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.017356 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005434 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 4IR A 1 400 400 4IR BIR . 
C 3 IR3 A 1 500 500 IR3 BI1 . 
D 3 IR3 A 1 601 501 IR3 BI2 . 
E 4 HOH A 1 501 500 HOH BI1 . 
E 4 HOH A 2 502 500 HOH BI1 . 
E 4 HOH A 3 503 500 HOH BI1 . 
E 4 HOH A 4 504 500 HOH BI1 . 
E 4 HOH A 5 505 500 HOH BI1 . 
E 4 HOH A 6 506 1 HOH HOH . 
E 4 HOH A 7 507 2 HOH HOH . 
E 4 HOH A 8 508 3 HOH HOH . 
E 4 HOH A 9 509 4 HOH HOH . 
E 4 HOH A 10 510 5 HOH HOH . 
E 4 HOH A 11 511 6 HOH HOH . 
E 4 HOH A 12 512 7 HOH HOH . 
E 4 HOH A 13 513 8 HOH HOH . 
E 4 HOH A 14 514 9 HOH HOH . 
E 4 HOH A 15 515 10 HOH HOH . 
E 4 HOH A 16 516 11 HOH HOH . 
E 4 HOH A 17 517 12 HOH HOH . 
E 4 HOH A 18 518 13 HOH HOH . 
E 4 HOH A 19 519 14 HOH HOH . 
E 4 HOH A 20 520 15 HOH HOH . 
E 4 HOH A 21 521 16 HOH HOH . 
E 4 HOH A 22 522 17 HOH HOH . 
E 4 HOH A 23 523 18 HOH HOH . 
E 4 HOH A 24 524 19 HOH HOH . 
E 4 HOH A 25 525 20 HOH HOH . 
E 4 HOH A 26 526 21 HOH HOH . 
E 4 HOH A 27 527 22 HOH HOH . 
E 4 HOH A 28 528 23 HOH HOH . 
E 4 HOH A 29 529 24 HOH HOH . 
E 4 HOH A 30 530 25 HOH HOH . 
E 4 HOH A 31 531 26 HOH HOH . 
E 4 HOH A 32 532 27 HOH HOH . 
E 4 HOH A 33 533 28 HOH HOH . 
E 4 HOH A 34 534 29 HOH HOH . 
E 4 HOH A 35 535 30 HOH HOH . 
E 4 HOH A 36 536 31 HOH HOH . 
E 4 HOH A 37 537 32 HOH HOH . 
E 4 HOH A 38 538 33 HOH HOH . 
E 4 HOH A 39 539 34 HOH HOH . 
E 4 HOH A 40 540 35 HOH HOH . 
E 4 HOH A 41 541 36 HOH HOH . 
E 4 HOH A 42 542 37 HOH HOH . 
E 4 HOH A 43 543 38 HOH HOH . 
E 4 HOH A 44 544 39 HOH HOH . 
E 4 HOH A 45 545 40 HOH HOH . 
E 4 HOH A 46 546 41 HOH HOH . 
E 4 HOH A 47 547 42 HOH HOH . 
E 4 HOH A 48 548 43 HOH HOH . 
E 4 HOH A 49 549 44 HOH HOH . 
E 4 HOH A 50 550 47 HOH HOH . 
E 4 HOH A 51 551 48 HOH HOH . 
E 4 HOH A 52 552 50 HOH HOH . 
E 4 HOH A 53 553 52 HOH HOH . 
E 4 HOH A 54 554 53 HOH HOH . 
E 4 HOH A 55 555 54 HOH HOH . 
E 4 HOH A 56 556 56 HOH HOH . 
E 4 HOH A 57 557 57 HOH HOH . 
E 4 HOH A 58 558 60 HOH HOH . 
E 4 HOH A 59 559 61 HOH HOH . 
E 4 HOH A 60 560 62 HOH HOH . 
E 4 HOH A 61 561 63 HOH HOH . 
E 4 HOH A 62 562 64 HOH HOH . 
E 4 HOH A 63 563 65 HOH HOH . 
E 4 HOH A 64 564 67 HOH HOH . 
E 4 HOH A 65 565 68 HOH HOH . 
E 4 HOH A 66 566 69 HOH HOH . 
E 4 HOH A 67 567 70 HOH HOH . 
E 4 HOH A 68 568 71 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 IR IR IR3 . A . D 3 20.394 38.371 -4.249 0.5 51.4 ? IR IR3 601 A 1 
HETATM 2 IR IR IR3 . B . D 3 19.29 39.201 -1.564 0.3 36.84 ? IR IR3 601 A 1 
HETATM 3 IR IR IR3 . C . D 3 22.283 37.451 -4.976 0.2 41.66 ? IR IR3 601 A 1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           308 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           3 
#