data_3PKA # _model_server_result.job_id Uc_KUjslAcAQYTaPoITOnQ _model_server_result.datetime_utc '2025-01-11 01:07:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3pka # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":286}' # _entry.id 3PKA # _exptl.entry_id 3PKA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 54.938 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MANGANESE (II) ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3PKA _cell.length_a 106.003 _cell.length_b 106.003 _cell.length_c 50.395 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3PKA _symmetry.cell_setting ? _symmetry.Int_Tables_number 173 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 63' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 PISA trimeric 3 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G 1 1 A,B,C,D,E,F,G 2 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_455 -y-1,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 -106.003 0 0 3 'crystal symmetry operation' 3_445 -x+y-1,-x-1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 -53.0015 -91.801291 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 131 A ASP 131 1_555 C MN MN . A MN 287 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.19 ? metalc ? metalc2 A OD2 ASP 131 A ASP 131 1_555 C MN MN . A MN 287 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.31 ? metalc ? metalc3 A OD1 ASP 142 A ASP 142 1_555 B MN MN . A MN 286 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.132 ? metalc ? metalc4 A OD2 ASP 142 A ASP 142 1_555 C MN MN . A MN 287 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.108 ? metalc ? metalc5 A NE2 HIS 205 A HIS 205 1_555 B MN MN . A MN 286 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.153 ? metalc ? metalc6 A OE2 GLU 238 A GLU 238 1_555 B MN MN . A MN 286 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.244 ? metalc ? metalc7 A OE1 GLU 269 A GLU 269 1_555 B MN MN . A MN 286 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.281 ? metalc ? metalc8 A OE2 GLU 269 A GLU 269 1_555 C MN MN . A MN 287 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.117 ? metalc ? metalc9 B MN MN . A MN 286 1_555 D O3 Y02 . A Y02 288 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.166 ? metalc ? metalc10 B MN MN . A MN 286 1_555 D O2 Y02 . A Y02 288 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.379 ? metalc ? metalc11 C MN MN . A MN 287 1_555 D O1 Y02 . A Y02 288 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.143 ? metalc ? metalc12 C MN MN . A MN 287 1_555 D O3 Y02 . A Y02 288 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.213 ? # _chem_comp.formula 'Mn 2' _chem_comp.formula_weight 54.938 _chem_comp.id MN _chem_comp.mon_nstd_flag . _chem_comp.name 'MANGANESE (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3PKA _atom_sites.fract_transf_matrix[1][1] 0.009434 _atom_sites.fract_transf_matrix[1][2] 0.005447 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010893 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019843 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MN A 1 286 1 MN MN . C 2 MN A 1 287 2 MN MN . D 3 Y02 A 1 288 1 Y02 Y02 . E 4 SO4 A 1 289 1 SO4 SO4 . F 5 CL A 1 290 1 CL CL . G 6 HOH A 1 291 1 HOH HOH . G 6 HOH A 2 292 2 HOH HOH . G 6 HOH A 3 293 3 HOH HOH . G 6 HOH A 4 294 4 HOH HOH . G 6 HOH A 5 295 5 HOH HOH . G 6 HOH A 6 296 6 HOH HOH . G 6 HOH A 7 297 7 HOH HOH . G 6 HOH A 8 298 8 HOH HOH . G 6 HOH A 9 299 9 HOH HOH . G 6 HOH A 10 300 10 HOH HOH . G 6 HOH A 11 301 11 HOH HOH . G 6 HOH A 12 302 12 HOH HOH . G 6 HOH A 13 303 13 HOH HOH . G 6 HOH A 14 304 14 HOH HOH . G 6 HOH A 15 305 15 HOH HOH . G 6 HOH A 16 306 16 HOH HOH . G 6 HOH A 17 307 17 HOH HOH . G 6 HOH A 18 308 18 HOH HOH . G 6 HOH A 19 309 19 HOH HOH . G 6 HOH A 20 310 20 HOH HOH . G 6 HOH A 21 311 21 HOH HOH . G 6 HOH A 22 312 22 HOH HOH . G 6 HOH A 23 313 23 HOH HOH . G 6 HOH A 24 314 24 HOH HOH . G 6 HOH A 25 315 25 HOH HOH . G 6 HOH A 26 316 26 HOH HOH . G 6 HOH A 27 317 27 HOH HOH . G 6 HOH A 28 318 28 HOH HOH . G 6 HOH A 29 319 29 HOH HOH . G 6 HOH A 30 320 30 HOH HOH . G 6 HOH A 31 321 31 HOH HOH . G 6 HOH A 32 322 32 HOH HOH . G 6 HOH A 33 323 33 HOH HOH . G 6 HOH A 34 324 34 HOH HOH . G 6 HOH A 35 325 35 HOH HOH . G 6 HOH A 36 326 36 HOH HOH . G 6 HOH A 37 327 37 HOH HOH . G 6 HOH A 38 328 38 HOH HOH . G 6 HOH A 39 329 39 HOH HOH . G 6 HOH A 40 330 40 HOH HOH . G 6 HOH A 41 331 41 HOH HOH . G 6 HOH A 42 332 42 HOH HOH . G 6 HOH A 43 333 43 HOH HOH . G 6 HOH A 44 334 44 HOH HOH . G 6 HOH A 45 335 45 HOH HOH . G 6 HOH A 46 336 46 HOH HOH . G 6 HOH A 47 337 47 HOH HOH . G 6 HOH A 48 338 48 HOH HOH . G 6 HOH A 49 339 49 HOH HOH . G 6 HOH A 50 340 50 HOH HOH . G 6 HOH A 51 341 51 HOH HOH . G 6 HOH A 52 342 52 HOH HOH . G 6 HOH A 53 343 53 HOH HOH . G 6 HOH A 54 344 54 HOH HOH . G 6 HOH A 55 345 55 HOH HOH . G 6 HOH A 56 346 56 HOH HOH . G 6 HOH A 57 347 57 HOH HOH . G 6 HOH A 58 348 58 HOH HOH . G 6 HOH A 59 349 59 HOH HOH . G 6 HOH A 60 350 60 HOH HOH . G 6 HOH A 61 351 61 HOH HOH . G 6 HOH A 62 352 62 HOH HOH . G 6 HOH A 63 353 63 HOH HOH . G 6 HOH A 64 354 64 HOH HOH . G 6 HOH A 65 355 65 HOH HOH . G 6 HOH A 66 356 66 HOH HOH . G 6 HOH A 67 357 67 HOH HOH . G 6 HOH A 68 358 68 HOH HOH . G 6 HOH A 69 359 69 HOH HOH . G 6 HOH A 70 360 70 HOH HOH . G 6 HOH A 71 361 71 HOH HOH . G 6 HOH A 72 362 72 HOH HOH . G 6 HOH A 73 363 73 HOH HOH . G 6 HOH A 74 364 74 HOH HOH . G 6 HOH A 75 365 75 HOH HOH . G 6 HOH A 76 366 76 HOH HOH . G 6 HOH A 77 367 77 HOH HOH . G 6 HOH A 78 368 78 HOH HOH . G 6 HOH A 79 369 79 HOH HOH . G 6 HOH A 80 370 80 HOH HOH . G 6 HOH A 81 371 81 HOH HOH . G 6 HOH A 82 372 82 HOH HOH . G 6 HOH A 83 373 83 HOH HOH . G 6 HOH A 84 374 84 HOH HOH . G 6 HOH A 85 375 85 HOH HOH . G 6 HOH A 86 376 86 HOH HOH . G 6 HOH A 87 377 87 HOH HOH . G 6 HOH A 88 378 88 HOH HOH . G 6 HOH A 89 379 89 HOH HOH . G 6 HOH A 90 380 90 HOH HOH . G 6 HOH A 91 381 91 HOH HOH . G 6 HOH A 92 382 92 HOH HOH . G 6 HOH A 93 383 93 HOH HOH . G 6 HOH A 94 384 94 HOH HOH . G 6 HOH A 95 385 95 HOH HOH . G 6 HOH A 96 386 96 HOH HOH . G 6 HOH A 97 387 97 HOH HOH . G 6 HOH A 98 388 98 HOH HOH . G 6 HOH A 99 389 99 HOH HOH . G 6 HOH A 100 390 100 HOH HOH . G 6 HOH A 101 391 101 HOH HOH . G 6 HOH A 102 392 102 HOH HOH . G 6 HOH A 103 393 103 HOH HOH . G 6 HOH A 104 394 104 HOH HOH . G 6 HOH A 105 395 105 HOH HOH . G 6 HOH A 106 396 106 HOH HOH . G 6 HOH A 107 397 107 HOH HOH . G 6 HOH A 108 398 108 HOH HOH . G 6 HOH A 109 399 109 HOH HOH . G 6 HOH A 110 400 110 HOH HOH . G 6 HOH A 111 401 111 HOH HOH . G 6 HOH A 112 402 112 HOH HOH . G 6 HOH A 113 403 113 HOH HOH . G 6 HOH A 114 404 114 HOH HOH . G 6 HOH A 115 405 115 HOH HOH . G 6 HOH A 116 406 116 HOH HOH . G 6 HOH A 117 407 117 HOH HOH . G 6 HOH A 118 408 118 HOH HOH . G 6 HOH A 119 409 119 HOH HOH . G 6 HOH A 120 410 120 HOH HOH . G 6 HOH A 121 411 121 HOH HOH . G 6 HOH A 122 412 122 HOH HOH . G 6 HOH A 123 413 123 HOH HOH . G 6 HOH A 124 414 124 HOH HOH . G 6 HOH A 125 415 125 HOH HOH . G 6 HOH A 126 416 126 HOH HOH . G 6 HOH A 127 417 127 HOH HOH . G 6 HOH A 128 418 128 HOH HOH . G 6 HOH A 129 419 129 HOH HOH . G 6 HOH A 130 420 130 HOH HOH . G 6 HOH A 131 421 131 HOH HOH . G 6 HOH A 132 422 132 HOH HOH . G 6 HOH A 133 423 133 HOH HOH . G 6 HOH A 134 424 134 HOH HOH . G 6 HOH A 135 425 135 HOH HOH . G 6 HOH A 136 426 136 HOH HOH . G 6 HOH A 137 427 137 HOH HOH . G 6 HOH A 138 428 138 HOH HOH . G 6 HOH A 139 429 139 HOH HOH . G 6 HOH A 140 430 140 HOH HOH . G 6 HOH A 141 431 141 HOH HOH . G 6 HOH A 142 432 142 HOH HOH . G 6 HOH A 143 433 143 HOH HOH . G 6 HOH A 144 434 144 HOH HOH . G 6 HOH A 145 435 145 HOH HOH . G 6 HOH A 146 436 146 HOH HOH . G 6 HOH A 147 437 147 HOH HOH . G 6 HOH A 148 438 148 HOH HOH . G 6 HOH A 149 439 149 HOH HOH . G 6 HOH A 150 440 150 HOH HOH . G 6 HOH A 151 441 151 HOH HOH . G 6 HOH A 152 442 152 HOH HOH . G 6 HOH A 153 443 153 HOH HOH . G 6 HOH A 154 444 154 HOH HOH . G 6 HOH A 155 445 155 HOH HOH . G 6 HOH A 156 446 156 HOH HOH . G 6 HOH A 157 447 157 HOH HOH . G 6 HOH A 158 448 158 HOH HOH . G 6 HOH A 159 449 159 HOH HOH . G 6 HOH A 160 450 160 HOH HOH . G 6 HOH A 161 451 161 HOH HOH . G 6 HOH A 162 452 162 HOH HOH . G 6 HOH A 163 453 163 HOH HOH . G 6 HOH A 164 454 164 HOH HOH . G 6 HOH A 165 455 165 HOH HOH . G 6 HOH A 166 456 166 HOH HOH . G 6 HOH A 167 457 167 HOH HOH . G 6 HOH A 168 458 168 HOH HOH . G 6 HOH A 169 459 169 HOH HOH . G 6 HOH A 170 460 170 HOH HOH . G 6 HOH A 171 461 171 HOH HOH . G 6 HOH A 172 462 172 HOH HOH . G 6 HOH A 173 463 173 HOH HOH . G 6 HOH A 174 464 174 HOH HOH . G 6 HOH A 175 465 175 HOH HOH . G 6 HOH A 176 466 176 HOH HOH . G 6 HOH A 177 467 177 HOH HOH . G 6 HOH A 178 468 178 HOH HOH . G 6 HOH A 179 469 179 HOH HOH . G 6 HOH A 180 470 180 HOH HOH . G 6 HOH A 181 471 181 HOH HOH . G 6 HOH A 182 472 182 HOH HOH . G 6 HOH A 183 473 183 HOH HOH . G 6 HOH A 184 474 184 HOH HOH . G 6 HOH A 185 475 185 HOH HOH . G 6 HOH A 186 476 186 HOH HOH . G 6 HOH A 187 477 187 HOH HOH . G 6 HOH A 188 478 188 HOH HOH . G 6 HOH A 189 479 189 HOH HOH . G 6 HOH A 190 480 190 HOH HOH . G 6 HOH A 191 481 191 HOH HOH . G 6 HOH A 192 482 192 HOH HOH . G 6 HOH A 193 483 193 HOH HOH . G 6 HOH A 194 484 194 HOH HOH . G 6 HOH A 195 485 195 HOH HOH . G 6 HOH A 196 486 196 HOH HOH . G 6 HOH A 197 487 197 HOH HOH . G 6 HOH A 198 488 198 HOH HOH . G 6 HOH A 199 489 199 HOH HOH . G 6 HOH A 200 490 200 HOH HOH . G 6 HOH A 201 491 201 HOH HOH . G 6 HOH A 202 492 202 HOH HOH . G 6 HOH A 203 493 203 HOH HOH . G 6 HOH A 204 494 204 HOH HOH . G 6 HOH A 205 495 205 HOH HOH . G 6 HOH A 206 496 206 HOH HOH . G 6 HOH A 207 497 207 HOH HOH . G 6 HOH A 208 498 208 HOH HOH . G 6 HOH A 209 499 209 HOH HOH . G 6 HOH A 210 500 210 HOH HOH . G 6 HOH A 211 501 211 HOH HOH . G 6 HOH A 212 502 212 HOH HOH . G 6 HOH A 213 503 213 HOH HOH . G 6 HOH A 214 504 214 HOH HOH . G 6 HOH A 215 505 215 HOH HOH . G 6 HOH A 216 506 216 HOH HOH . G 6 HOH A 217 507 217 HOH HOH . G 6 HOH A 218 508 218 HOH HOH . G 6 HOH A 219 509 219 HOH HOH . G 6 HOH A 220 510 220 HOH HOH . G 6 HOH A 221 511 221 HOH HOH . G 6 HOH A 222 512 222 HOH HOH . G 6 HOH A 223 513 223 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MN _atom_site.label_atom_id MN _atom_site.label_comp_id MN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id B _atom_site.label_entity_id 2 _atom_site.Cartn_x -41.779 _atom_site.Cartn_y -15.319 _atom_site.Cartn_z -0.198 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 7.09 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MN _atom_site.auth_comp_id MN _atom_site.auth_seq_id 286 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 240 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #